EWM24015.1, cds6651 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24015.1 vs. NCBI_GenBank
Match: gi|585105302|gb|EWM24015.1| (uroporphyrinogen-iii synthase [Nannochloropsis gaditana]) HSP 1 Score: 809.29 bits (2089), Expect = 0.000e+0 Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query: 1 MPQSLVSSPSRLCSPLFSFVGLILSAAVSFLTVNVLASHAYLLPAPPQHEQQPSFHQQVHPNYLNKHGQTQSFGYSSVEVNRARMPSNMVGISQRIKSSLFAGRSSAPPSTSTSSRNVVVLTREAGKNDKLRRILESQKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVSIGEATGELLKKAGASIVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEEMSLAQSCAVVTFASPSALKVWAARLGMDFNMACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALEAKDEEVAG 392
MPQSLVSSPSRLCSPLFSFVGLILSAAVSFLTVNVLASHAYLLPAPPQHEQQPSFHQQVHPNYLNKHGQTQSFGYSSVEVNRARMPSNMVGISQRIKSSLFAGRSSAPPSTSTSSRNVVVLTREAGKNDKLRRILESQKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVSIGEATGELLKKAGASIVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEEMSLAQSCAVVTFASPSALKVWAARLGMDFNMACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALEAKDEEVAG
Sbjct: 1 MPQSLVSSPSRLCSPLFSFVGLILSAAVSFLTVNVLASHAYLLPAPPQHEQQPSFHQQVHPNYLNKHGQTQSFGYSSVEVNRARMPSNMVGISQRIKSSLFAGRSSAPPSTSTSSRNVVVLTREAGKNDKLRRILESQKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVSIGEATGELLKKAGASIVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEEMSLAQSCAVVTFASPSALKVWAARLGMDFNMACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALEAKDEEVAG 392
BLAST of EWM24015.1 vs. NCBI_GenBank
Match: gi|223995753|ref|XP_002287550.1| (uroporphyrinogen III synthase [Thalassiosira pseudonana CCMP1335] >gi|220976666|gb|EED94993.1| uroporphyrinogen III synthase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 201.445 bits (511), Expect = 4.741e-58 Identity = 123/284 (43.31%), Postives = 157/284 (55.28%), Query Frame = 0
Query: 118 VVVLTREAGKNDKLRR-ILESQKITAL-----------EIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVSIGEATGELLKKAGASIVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEEMSLAQSCAVVTFASPSALKVWAARL-GMD----FNMACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALE 384
VV LTRE GKNDKLR+ +L ++ I L EIPCI H +L TL FDY+ ITSPEAA+V + A + + ++G+AT E LK+ G + F PSKA A LV ELP + +++ + YPAS +AA TL+ GL++RG FDV+RLNTYDTVPA W +E+ LAQS V FASPSA+K W GM+ ACIGET+A A WDES IFYP + PG+DGWA +V DAL+
Sbjct: 66 VVALTREEGKNDKLRKALLSNEHIQQLSQSSGVAVDIHEIPCIEHADGPDTDKLVPTLASTQFDYVAITSPEAAKVLVNAWIEAGRPQLGKVAAVGKATQESLKEFGIEVAFVPSKATAATLVKELPL---SDAATKEGRSSTLFYPASNKAADTLQNGLEERG----------------------FDVMRLNTYDTVPASWDEEQTLLAQSANVACFASPSAVKAWLKNTDGMNKPARAKAACIGETSAEACRKNQWDESDIFYP-EKPGVDGWAVSVADALD 323
BLAST of EWM24015.1 vs. NCBI_GenBank
Match: gi|1210525897|dbj|GAX15503.1| (uroporphyrinogen-III synthase [Fistulifera solaris]) HSP 1 Score: 193.741 bits (491), Expect = 1.523e-55 Identity = 107/262 (40.84%), Postives = 151/262 (57.63%), Query Frame = 0
Query: 118 VVVLTREAGKNDKLRRILESQKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYK--PTNLVSIGEATGELLKKAGASIVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEEMSLAQSCAVVTFASPSALKVWAARLGMDFNM--ACIGETTATAAIALGWDESRIFYPKDAPGIDGW 375
VV TRE GKN++L + + + + +E+PCIAH ++ L+ETL+ +DY+ ITSPEAA+V A + CT P +V++G+AT + L+ +G ++ F PSKA A+VLV ELP + + +VLYPAS RA TL++GL +RG F V+RLNTYDTV A W + E ++A + FASPSA+K W + + ACIGET+A A GW+E IFYP D PG++GW
Sbjct: 48 VVAATREQGKNEQLMKGIRAIHLNPVELPCIAHADGPDFSSLQETLETNPWDYVTITSPEAARVLSSAWQHCTWQTTPPPAVVAVGKATEDALQASGITVTFCPSKATAEVLVQELP--------LPSSQQPRVLYPASVRAQTTLQDGLTQRG----------------------FTVVRLNTYDTVTAQWNEHETNMAAQVQIACFASPSAVKGWLLNTENNHQVLAACIGETSAKACRERGWNEEHIFYP-DKPGMEGW 278
BLAST of EWM24015.1 vs. NCBI_GenBank
Match: gi|1210522214|dbj|GAX18976.1| (uroporphyrinogen-III synthase [Fistulifera solaris]) HSP 1 Score: 191.43 bits (485), Expect = 1.634e-54 Identity = 111/264 (42.05%), Postives = 151/264 (57.20%), Query Frame = 0
Query: 118 VVVLTREAGKNDKLRRILESQKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVSIGEATGELLKKAGASIVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEEMSLAQSCAVVTFASPSALKVWAARLGMDFN----MACIGETTATAAIALGWDESRIFYPKDAPGIDGWAS 377
VV TRE GKN++L + + + +E+PCIAH ++ L+ETL +DY+ ITSPEAA+V A + CT P +V++G+AT + L+ AG ++ F PSKA A+VLV ELP ++++ KVLYPAS RA TL++GL +RG F V+RLNTYDTV A W + E A + FASPSA+K W L + N ACIGET+A A GWDE IFYP + PG++GW +
Sbjct: 48 VVAATREQGKNEQLMKGIRGIHLHPVELPCIAHADGPDFSSLQETLQNNHWDYVTITSPEAARVLSSAWQHCTWPTPPAVVAVGKATEDALQAAGIAVAFCPSKATAEVLVQELPL------PSQQQQQPKVLYPASVRAQTTLQDGLTQRG----------------------FTVVRLNTYDTVTAHWNEHETVQAAQVQIACFASPSAVKGW--LLNTENNNAVLAACIGETSAKACRERGWDEEHIFYP-EKPGMEGWVN 280
BLAST of EWM24015.1 vs. NCBI_GenBank
Match: gi|219115113|ref|XP_002178352.1| (uroporphyrinogen-iii synthase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410087|gb|EEC50017.1| uroporphyrinogen-iii synthase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 184.496 bits (467), Expect = 6.237e-52 Identity = 113/283 (39.93%), Postives = 157/283 (55.48%), Query Frame = 0
Query: 111 TSTSSRN---VVVLTREAGKNDKLRRILESQ---KITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVSIGEATGELLKKAGASIVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEEMSLAQSCAVVTFASPSALKVWAARLGMDFNM--ACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALEA 385
TSTSS V +TRE G N KL + LES+ +I+ LE+PCIAH E YA L E L E +DY+ +TSP+AA + L +A P + ++G+AT E L++ G ++ F PSKA+A L++ELP R +VLYPAS +A TLE GL++RG F+V+RLN YDTV A WT + + A+ C V F SPSA+ W + + ACIG+T+A GW + IF+P D PGI+GW + V +A++A
Sbjct: 39 TSTSSAEDSIAVAVTREDGNNKKLLKALESRLAGRISVLEVPCIAHADGEDYALLAEKLRSERWDYVAVTSPQAA-IILNSAWDSVRDDPIPVTAVGKATSEALEEYGIAVSFCPSKAIATTLMLELP-------ATRVTDATRVLYPASAKARTTLENGLRERG----------------------FEVVRLNAYDTVSAHWTHIQRTNAEKCQVACFGSPSAVDGWLRNSNNNTTVLAACIGKTSADVCRDRGWPKECIFFP-DKPGIEGWINVVEEAVDA 290
BLAST of EWM24015.1 vs. NCBI_GenBank
Match: gi|1072227697|gb|OEU12436.1| (uroporphyrinogen III synthase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 183.726 bits (465), Expect = 2.555e-51 Identity = 112/279 (40.14%), Postives = 152/279 (54.48%), Query Frame = 0
Query: 118 VVVLTREAGKNDKLRRILES-----QKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVSIGEATGELLKKAGASIVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEEMSLAQSCAVVTFASPSALKVWAARLGMDFNM--ACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALEAKDEE 389
VV LTRE GKN+KLR +E ++ LE+PCI H Y L TL + +DYI ITSPEAA+V L +A P +V++G+AT L+ + + F PSKA AK L EL V + + VLYPAS +A TL++GL +RG F V RLNTYDT+ A W D+E + V FASPS++K W + + ACIGET+ATA LGW+E++IF+P++ PG+DGW A+ A+E +E
Sbjct: 66 VVTLTREDGKNEKLREKIEEDSELMNQVDLLEMPCIEHADGCDYESLAPTLLSQRWDYIAITSPEAAKV-LASAWDGVRNDPLPVVAVGKATEARLRDSDIPVTFVPSKATAKTLAAELELVS-------GKSSTNVLYPASAKAKTTLQDGLTERG----------------------FTVTRLNTYDTITATWGDDEKKSSDKVQVACFASPSSVKGWLKNTENNTRVLAACIGETSATACKELGWEENQIFFPEN-PGLDGWVEAIHKAIEVSKKE 313
BLAST of EWM24015.1 vs. NCBI_GenBank
Match: gi|1191664159|gb|OTG16128.1| (putative tetrapyrrole biosynthesis, uroporphyrinogen III synthase [Helianthus annuus]) HSP 1 Score: 174.096 bits (440), Expect = 2.188e-47 Identity = 118/315 (37.46%), Postives = 167/315 (53.02%), Query Frame = 0
Query: 86 PSNMVGISQRIKSSLFAGRSSAPPSTSTSSRNVVVLTREAGKNDKLRRILESQKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVS-IGEATGELLKKAGAS------IVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEE-MSLAQSCAVVTFASPSALKVWAARL----GMDFNMACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALEAKDE 388
PS ++ +R S F R+S+P ++++ S + VV+TRE GKNDKL L I +LE+P I H +L L +FD+I+ITSPEAA VFL+A + P+ V+ +G T + +A S + FTPSKA KVL +ELP ++ + VLYPAS +A+ +EEGL KRG F V RLNTY T P D+ + AQS +VV ASPSA++ W L + ++ACIGETTA+AA LG I+YP +P GW +++DAL+ ++
Sbjct: 56 PSQLLHHHRR--SCSFKLRASSPLNSNSFSDHRVVVTRERGKNDKLITALAKHGINSLELPLIQHTQLPDLDKLVSLLSAASFDWIIITSPEAALVFLQAWKAAG--TPSVKVAVVGSGTASVFHEAMPSSKQLIDVAFTPSKATGKVLALELPHYQNDK--------STVLYPASAKASHDIEEGLSKRG----------------------FYVTRLNTYTTEPVQHVDQMLLKQAQSASVVAVASPSAIRAWFDLLPEPDNWNGSIACIGETTASAARKLGLRN--IYYP-SSPSFQGWVDSILDALQVHNQ 333
BLAST of EWM24015.1 vs. NCBI_GenBank
Match: gi|729464306|ref|XP_010525999.1| (PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Tarenaya hassleriana]) HSP 1 Score: 172.17 bits (435), Expect = 7.482e-47 Identity = 112/281 (39.86%), Postives = 149/281 (53.02%), Query Frame = 0
Query: 119 VVLTREAGKNDKLRRILESQKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVSIGEATGELLKKAGAS------IVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEE-MSLAQSCAVVTFASPSALKVWAARL----GMDFNMACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALEAKDE 388
VV+TRE GKN KL R LE I+ LE+P I H + QL L FD+I+ITSPEA VFL+A + + + +G T + K+A S + FTPSKA KVL ELP M K + VLYPAS +A+ +EEGL RG F+V+RLNTY TVP DE + A S VV+ ASPSA++VW + ++ACIGETTA+AA LG +I+YP PG++GW +++AL A ++
Sbjct: 80 VVVTRERGKNGKLVRALEKHGISCLELPLIQHAQGPDFQQLASVLRDNTFDWIIITSPEAGSVFLDAWKAAGTPR-VKIAVVGSGTASIFKEAMQSSEGLLGVAFTPSKATGKVLASELP--------MDVGKRSSVLYPASLKASNDIEEGLAARG----------------------FEVLRLNTYTTVPVHTVDEALLQQALSVPVVSAASPSAIRVWIDLIPDLEQWSNSIACIGETTASAARRLGLQ--KIYYPTQ-PGLEGWVDCILEALNAHNQ 326
BLAST of EWM24015.1 vs. NCBI_GenBank
Match: gi|922554625|ref|XP_013605362.1| (PREDICTED: uroporphyrinogen-III synthase, chloroplastic [Brassica oleracea var. oleracea] >gi|923876688|ref|XP_013711328.1| PREDICTED: uroporphyrinogen-III synthase, chloroplastic [Brassica napus] >gi|674956634|emb|CDX76702.1| BnaC08g32880D [Brassica napus]) HSP 1 Score: 170.244 bits (430), Expect = 1.533e-46 Identity = 110/288 (38.19%), Postives = 163/288 (56.60%), Query Frame = 0
Query: 111 TSTSSRNVVVLTREAGKNDKLRRILESQKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAAR-TCTLYKPTNLVSIGEAT--GELLK--KAGASIVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEE-MSLAQSCAVVTFASPSALKVWAARLGMD----FNMACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALEAKDE 388
+S++S VV+TRE+GKN ++ + LE + I++LE+P I H + +L L ++FD+I+ITSP+AA VFLEA + C+ +V G A E L+ + + FTPSKA KVL ELP+ KT+ VLYPAS +A+ +EEGL +RG FDV+RLNTY TVP D + A S V++ SPSA++ W + + N+ACIGETTA+AA LG+ ++++P + PG++GW ++M+AL A +E
Sbjct: 33 SSSNSIPQVVVTRESGKNKQIIKALEKRGISSLELPLIQHARGPDFDRLPSLLTDKSFDWIIITSPQAASVFLEAWKAACSPKVKVGVVGAGTARIFDEPLQASQGALHLAFTPSKATGKVLASELPD--------NVGKTSSVLYPASLKASNEIEEGLSRRG----------------------FDVLRLNTYTTVPVQSVDATLLQQALSAPVLSVGSPSAIRAWMNLIQNEKQWSNNVACIGETTASAARRLGFK--KVYHP-EQPGLEGWVDSIMEALTAHEE 287
BLAST of EWM24015.1 vs. NCBI_GenBank
Match: gi|727483148|ref|XP_010417448.1| (PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Camelina sativa]) HSP 1 Score: 170.244 bits (430), Expect = 2.442e-46 Identity = 108/278 (38.85%), Postives = 151/278 (54.32%), Query Frame = 0
Query: 119 VVLTREAGKNDKLRRILESQKITALEIPCIAHCHAEGYAQLKETLDGEAFDYIVITSPEAAQVFLEAARTCTLYKPTNLVSIGEATGELLKKAGAS------IVFTPSKALAKVLVVELPEVHEERGGMRRRKTAKVLYPASKRAAGTLEEGLQKRGLWEEVVEEEGEGMGGEKQSGRLFDVIRLNTYDTVPADWTDEE-MSLAQSCAVVTFASPSALKVWAARLGMD----FNMACIGETTATAAIALGWDESRIFYPKDAPGIDGWASAVMDALEA 385
VV+TRE GKN ++ + LE I++LE+P I H + +L L E+FD+I+ITSPEA VFLEA + + Y + +G T + ++A S + FTPSKA KVL ELP+ + K + VLYPAS +A +EEGL RG F+V RLNTY TVP D + A S V++ ASPSA++ W + D ++ACIGETTA+AA LG ++YP +APG++GW ++M+AL A
Sbjct: 58 VVVTRERGKNKQIIKALEKHGISSLELPLIQHAQGPDFHRLASVLSDESFDWIIITSPEAGSVFLEAWKAAS-YPKVQIGVVGAGTARVFEEARQSTEGLLHVAFTPSKATGKVLASELPD--------KVGKRSSVLYPASLKAGNDIEEGLSNRG----------------------FEVTRLNTYTTVPVHNVDTVLLKEALSAPVLSVASPSAIRAWLNLIQNDEQWSNHVACIGETTASAARRLGLK--NVYYP-EAPGLEGWVESIMEALVA 301 The following BLAST results are available for this feature:
BLAST of EWM24015.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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