EWM24040.1, cds6633 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24040.1 vs. NCBI_GenBank
Match: gi|585105330|gb|EWM24040.1| (Poly A polymerase, head domain protein [Nannochloropsis gaditana]) HSP 1 Score: 842.032 bits (2174), Expect = 0.000e+0 Identity = 416/416 (100.00%), Postives = 416/416 (100.00%), Query Frame = 0
Query: 1 MLTKHPSTLRAPVPTHSCRTGGTHDMRAMFVPFTRLSPFPFIYLLVMMLASSTVVSSLRRSYSLAMTSTAAATGTLLLPQKSHMRFMPAFVALPPLSLAPLPLHACGSKMGSGVPDFWLTGGSPKASSSCQSRPQAPSSRLAAVVSRSTSRSKATSSIDKRTAGVGGGDGMDTAGGRESPSIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSEKRFFPSL 416
MLTKHPSTLRAPVPTHSCRTGGTHDMRAMFVPFTRLSPFPFIYLLVMMLASSTVVSSLRRSYSLAMTSTAAATGTLLLPQKSHMRFMPAFVALPPLSLAPLPLHACGSKMGSGVPDFWLTGGSPKASSSCQSRPQAPSSRLAAVVSRSTSRSKATSSIDKRTAGVGGGDGMDTAGGRESPSIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSEKRFFPSL
Sbjct: 1 MLTKHPSTLRAPVPTHSCRTGGTHDMRAMFVPFTRLSPFPFIYLLVMMLASSTVVSSLRRSYSLAMTSTAAATGTLLLPQKSHMRFMPAFVALPPLSLAPLPLHACGSKMGSGVPDFWLTGGSPKASSSCQSRPQAPSSRLAAVVSRSTSRSKATSSIDKRTAGVGGGDGMDTAGGRESPSIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSEKRFFPSL 416
BLAST of EWM24040.1 vs. NCBI_GenBank
Match: gi|298712997|emb|CBJ26899.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 286.96 bits (733), Expect = 1.830e-86 Identity = 141/247 (57.09%), Postives = 182/247 (73.68%), Query Frame = 0
Query: 177 RESPSIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLG--------HWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRG------RQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSE 409
R I L+ E +LFKT+L +V+ E +GTTLRVAGGWVRDK++G H S ++DIDIALDN MG DFAA LN +L++R +++ V +I++NP KSKHLETAT+R+ +F +DFVNLRTE+Y +SRIPS+ IG+P ED+ RRDLTIN+LFYN++TG +ED+ G+G D+R G++RTPLP TLLDDPLR LRAVRFASRL F + EL+ A DP+VH AL KVSRER+G E
Sbjct: 120 RNDIKIILTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRRKSDPGARKRMSKVALIASNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPKVHEALCMKVSRERVGCE 366
BLAST of EWM24040.1 vs. NCBI_GenBank
Match: gi|831786104|ref|XP_012758000.1| (hypothetical protein SAMD00019534_019550 [Acytostelium subglobosum LB1] >gi|735858632|dbj|GAM18780.1| hypothetical protein SAMD00019534_019550 [Acytostelium subglobosum LB1]) HSP 1 Score: 284.263 bits (726), Expect = 2.419e-86 Identity = 136/243 (55.97%), Postives = 179/243 (73.66%), Query Frame = 0
Query: 169 DGMDTAGGRESPSIPL--SPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSE 409
D +D A G ++PL S E RLF+ +L VV+ GTTLRVAGGWVRDK+ G D DIDIALDNLMG FA+++N +L ++ + +G+I +NP++SKHLETAT+R+ IDFVNLR+E YT+ESRIP++ IG+P+EDA RRDLTIN+LFYN++ +IEDF G G+ D+ G++RTPLP TT LDDPLRVLR++RFA+RL ++I +LV AAS P+V AL KVS ER+G E
Sbjct: 89 DYVDAAVGNTGETVPLYISETERRLFEVLLQVVEKSKCGTTLRVAGGWVRDKLRG----DDSSDIDIALDNLMGEAFASLVNQYLQDHNQETHRIGVIQSNPSQSKHLETATVRIFDMWIDFVNLRSETYTEESRIPTIQIGTPQEDAFRRDLTINSLFYNINENKIEDFTGNGINDLMCGIVRTPLPPQTTFLDDPLRVLRSIRFATRLYYAIDHKLVEAASSPKVKEALKSKVSHERVGIE 327
BLAST of EWM24040.1 vs. NCBI_GenBank
Match: gi|66800349|ref|XP_629100.1| (hypothetical protein DDB_G0293504 [Dictyostelium discoideum AX4] >gi|60462467|gb|EAL60687.1| hypothetical protein DDB_G0293504 [Dictyostelium discoideum AX4]) HSP 1 Score: 279.256 bits (713), Expect = 3.735e-85 Identity = 131/232 (56.47%), Postives = 172/232 (74.14%), Query Frame = 0
Query: 178 ESPSIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSE 409
ES I L+ E +LFK ++ V++D GTTLRVAGGWVRDK+ G D DIDI LDN+MG FA ++N L+ + Q + +G+I +NP +SKHLETAT++V IDFVNLR+E+YTD SRIP + IG+P +DA+RRDLTIN+LF+N++ +IEDF G+G+ D+R+G+IRTPLP+LTT LDDPLRV R++RFASRL F I +EL A SDP V A+ K+S ERI E
Sbjct: 65 ESVDIRLTECEIQLFKELMHVIRDSGCGTTLRVAGGWVRDKLRG----DDSNDIDITLDNMMGEAFAELVNKHLSSKHHQTHRIGVIQSNPEQSKHLETATVKVFDMWIDFVNLRSESYTDTSRIPVISIGTPLQDALRRDLTINSLFFNINENRIEDFTGQGINDLRDGIIRTPLPSLTTFLDDPLRVFRSIRFASRLNFKIDEELFKAGSDPVVKDAIKSKISHERIAKE 292
BLAST of EWM24040.1 vs. NCBI_GenBank
Match: gi|330812875|ref|XP_003291342.1| (hypothetical protein DICPUDRAFT_38806 [Dictyostelium purpureum] >gi|325078484|gb|EGC32133.1| hypothetical protein DICPUDRAFT_38806 [Dictyostelium purpureum]) HSP 1 Score: 274.248 bits (700), Expect = 3.906e-83 Identity = 131/241 (54.36%), Postives = 173/241 (71.78%), Query Frame = 0
Query: 170 GMDTAGGR-ESPSIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSE 409
G+D+ G +S I L+ +E LF+ ++ VV++ N GTTLRVAGGWVRDK+ G D DIDI LDN+MG FA ++N L+ + Q + +G+I +NP +SKHLETAT+++ IDFVNLR+E YTD SRIP + IG+P ED++RRDLTIN+LFYN++ +IEDF G+ + D+ G+IRTPLP LTT LDDPLRV R++RFASRL F I ELV AAS+ V A+ K+S ERI E
Sbjct: 55 GIDSNNGEIKSTEIHLTKSEVLLFQELMHVVRNSNCGTTLRVAGGWVRDKLRG----DDSNDIDITLDNMMGESFAELVNKHLSGKQHQTHRIGVIQSNPEQSKHLETATVKIFDLWIDFVNLRSETYTDNSRIPEIKIGTPLEDSLRRDLTINSLFYNINENKIEDFTGKAITDLNLGIIRTPLPPLTTFLDDPLRVFRSIRFASRLYFKIDQELVEAASNAVVKEAIKSKISHERIAKE 291
BLAST of EWM24040.1 vs. NCBI_GenBank
Match: gi|470265732|ref|XP_004361592.1| (tRNA nucleotidyltransferase [Dictyostelium fasciculatum] >gi|328875376|gb|EGG23741.1| tRNA nucleotidyltransferase [Dictyostelium fasciculatum]) HSP 1 Score: 275.404 bits (703), Expect = 4.813e-83 Identity = 133/258 (51.55%), Postives = 177/258 (68.60%), Query Frame = 0
Query: 152 SKATSSIDKRTAGVGGGDGMDTAGGRESPSIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSE 409
K T +G D DTA +I ++ E +LF+ +L V K N TTLRVAGGWVRDK+ G D DIDIALDN+MG FAA++N +L ++ + +G+I +NP +SKHLETAT+++ +D VNLR+E Y+ SRIP + IG+PE+DA RRDLTIN+LFYN++ +IEDF G G+ D++ G++RTPLP LTT LDDPLRVLR++RFA+RL ++I +LV AAS+P V AL KVS ERIG E
Sbjct: 73 DKDTKEFYNVVVAIGDKDSTDTA------TIEITKVEQKLFQILLDVAKVNNCNTTLRVAGGWVRDKLRG----DNSHDIDIALDNMMGEAFAALVNKYLEDHHQETHRIGVIQSNPDQSKHLETATVKIFDSWVDLVNLRSETYSSNSRIPEIKIGTPEQDAFRRDLTINSLFYNVNENRIEDFTGNGIVDLKCGIVRTPLPPLTTFLDDPLRVLRSIRFATRLYYAIDHKLVEAASNPTVKEALKSKVSHERIGIE 320
BLAST of EWM24040.1 vs. NCBI_GenBank
Match: gi|1160564697|ref|XP_020429327.1| (tRNA nucleotidyltransferase [Polysphondylium pallidum PN500] >gi|281202997|gb|EFA77198.1| tRNA nucleotidyltransferase [Polysphondylium pallidum PN500]) HSP 1 Score: 273.478 bits (698), Expect = 1.689e-82 Identity = 131/239 (54.81%), Postives = 174/239 (72.80%), Query Frame = 0
Query: 173 TAGGRESPSIPLS--PAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSE 409
TA G ++PL+ E +LF+T+L VV+ GT LRVAGGWVRDK+ G D DIDIALDN+MG FA+++N +L ++ + +G+I +NP +SKHLETAT+R+ IDFVNLR+E Y+D SRIP + IG+PE+DA RRDLTIN+LFYN++ +IEDF G G+ D++ G++RTPLP TT LDDPLRVLR++RFA+RL ++I +LV AAS V ALA KVS ER+G E
Sbjct: 72 TAIGESGETVPLNITKVEQQLFQTLLQVVEQTKCGTVLRVAGGWVRDKLRG----DHSSDIDIALDNMMGEAFASLVNQYLKDHKQETHRIGVIQSNPAQSKHLETATVRIYDMWIDFVNLRSETYSDHSRIPEITIGTPEQDAYRRDLTINSLFYNINENKIEDFTGNGVDDLKCGIVRTPLPPQTTFLDDPLRVLRSIRFATRLYYAIDHKLVEAASSSTVKDALASKVSHERVGIE 306
BLAST of EWM24040.1 vs. NCBI_GenBank
Match: gi|303286187|ref|XP_003062383.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226455900|gb|EEH53202.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 273.863 bits (699), Expect = 2.294e-81 Identity = 132/229 (57.64%), Postives = 169/229 (73.80%), Query Frame = 0
Query: 181 SIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSE 409
++ + E R+F T+L VV+ +L TLRVAGGWVRDK+LG S DIDIA+D+L+G +FA ++N L ++G V+ VG+I +NP +SKHLETATMRV +D VNLR+E Y++ESRIP M GS +DA RRDLTINALFYN++ Q+EDF G GL+D+++GV+RTPLP TT LDDPLR+LRAVRFASR F + DE+V AA D V AL KVSRER+G E
Sbjct: 142 TVTCTAEEERIFATLLEVVEKNDLPVTLRVAGGWVRDKLLGKNS----TDIDIAIDSLLGREFAELVNAHLREKGETVHGVGVIQSNPDQSKHLETATMRVHDVWLDLVNLRSENYSEESRIPEMTFGSATDDAFRRDLTINALFYNINLKQVEDFTGMGLKDLQDGVVRTPLPPKTTFLDDPLRILRAVRFASRFGFVLDDEIVSAAGDADVQCALRTKVSRERVGKE 366
BLAST of EWM24040.1 vs. NCBI_GenBank
Match: gi|308801765|ref|XP_003078196.1| (tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putati (ISS) [Ostreococcus tauri]) HSP 1 Score: 266.929 bits (681), Expect = 1.347e-80 Identity = 127/243 (52.26%), Postives = 172/243 (70.78%), Query Frame = 0
Query: 167 GGDGMDTAGGRESPSIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSE 409
GGD + G + + E+ +F+T+LAVV+ L TLRVAGGWVRDK++G S D ID+ALD ++G +FA +N +L G + +G+I +NP +SKHLETATMRV +D VNLR+E Y+++SRIP M G+ ++DA RRDLTIN+LFYNL+ ++EDF RG++D+R+G++RTPLP TT LDDPLR+LRAVRFA+R F + +E+ +ASDP V AL HKVSRER G E
Sbjct: 30 GGDDVGYEG-----EVRCTAKETEVFETLLAVVEHFKLDVTLRVAGGWVRDKLVGRESDD----IDVALDTMLGKEFAEKVNEYLEANGMETKGIGVIQSNPEQSKHLETATMRVRDVWLDLVNLRSENYSEDSRIPDMEFGTAKDDAFRRDLTINSLFYNLNEKKVEDFTERGIQDLRDGIVRTPLPPRTTFLDDPLRILRAVRFAARFGFDVDEEIGASASDPDVQNALKHKVSRERFGKE 263
BLAST of EWM24040.1 vs. NCBI_GenBank
Match: gi|1199288746|gb|OUS43882.1| (putative tRNA-nucleotidyltransferase [Ostreococcus tauri]) HSP 1 Score: 267.314 bits (682), Expect = 2.505e-80 Identity = 127/243 (52.26%), Postives = 172/243 (70.78%), Query Frame = 0
Query: 167 GGDGMDTAGGRESPSIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLGHWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQVYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSE 409
GGD + G + + E+ +F+T+LAVV+ L TLRVAGGWVRDK++G S D ID+ALD ++G +FA +N +L G + +G+I +NP +SKHLETATMRV +D VNLR+E Y+++SRIP M G+ ++DA RRDLTIN+LFYNL+ ++EDF RG++D+R+G++RTPLP TT LDDPLR+LRAVRFA+R F + +E+ +ASDP V AL HKVSRER G E
Sbjct: 67 GGDDVGYEG-----EVRCTAKETEVFETLLAVVEHFKLDVTLRVAGGWVRDKLVGRESDD----IDVALDTMLGKEFAEKVNEYLEANGMETKGIGVIQSNPEQSKHLETATMRVRDVWLDLVNLRSENYSEDSRIPDMEFGTAKDDAFRRDLTINSLFYNLNEKKVEDFTERGIQDLRDGIVRTPLPPRTTFLDDPLRILRAVRFAARFGFDVDEEIGASASDPDVQNALKHKVSRERFGKE 300 The following BLAST results are available for this feature:
BLAST of EWM24040.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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