EWM24045.1, cds6631 (CDS) Nannochloropsis gaditana

Overview
NameEWM24045.1
Unique Namecds6631
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:168278..168513 +
Alignment locationCM002469.1:168723..169419 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24045.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100280g9.2294.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:168278..168513 +
CM002469.1supercontigCM002469.1:168723..169419 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24045.1 vs. NCBI_GenBank
Match: gi|585105336|gb|EWM24045.1| (hypothetical protein Naga_100280g9 [Nannochloropsis gaditana])

HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MMVSSRVDEEERLLPSVVAVGLMSTPHTVEDKEEDDVPVEVREHVGELGRHYRALSKRHVSCLSLLAAALIFLENDDVSLLLKKACLALFISSYADYFIKPSPLLDDVTVRLHVDDLIRPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPIAVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWPGLQCGGSNFGVLPHLPVVPTACVAFALSLNIVGNWAGVMPVC 310
            MMVSSRVDEEERLLPSVVAVGLMSTPHTVEDKEEDDVPVEVREHVGELGRHYRALSKRHVSCLSLLAAALIFLENDDVSLLLKKACLALFISSYADYFIKPSPLLDDVTVRLHVDDLIRPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPIAVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWPGLQCGGSNFGVLPHLPVVPTACVAFALSLNIVGNWAGVMPVC
Sbjct:    1 MMVSSRVDEEERLLPSVVAVGLMSTPHTVEDKEEDDVPVEVREHVGELGRHYRALSKRHVSCLSLLAAALIFLENDDVSLLLKKACLALFISSYADYFIKPSPLLDDVTVRLHVDDLIRPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPIAVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWPGLQCGGSNFGVLPHLPVVPTACVAFALSLNIVGNWAGVMPVC 310          
BLAST of EWM24045.1 vs. NCBI_GenBank
Match: gi|553185615|ref|XP_005854277.1| (hypothetical protein NGA_0208300 [Nannochloropsis gaditana CCMP526] >gi|422294782|gb|EKU22082.1| hypothetical protein NGA_0208300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 309/310 (99.68%), Postives = 309/310 (99.68%), Query Frame = 0
Query:    1 MMVSSRVDEEERLLPSVVAVGLMSTPHTVEDKEEDDVPVEVREHVGELGRHYRALSKRHVSCLSLLAAALIFLENDDVSLLLKKACLALFISSYADYFIKPSPLLDDVTVRLHVDDLIRPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPIAVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWPGLQCGGSNFGVLPHLPVVPTACVAFALSLNIVGNWAGVMPVC 310
            MMVSSRVDEEERLLPSVVAVGLMSTPHTVEDKEEDDVPVEVREHVGELGRHYRALSKRHVSCLSLLAAALIFLENDDVSLLLKKACLALFISSYADYFIKPSPLLDDVTVRLHVDDLIRPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPIAVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWPGLQCGGSNFGVLPHLPVVPTACVA ALSLNIVGNWAGVMPVC
Sbjct:    1 MMVSSRVDEEERLLPSVVAVGLMSTPHTVEDKEEDDVPVEVREHVGELGRHYRALSKRHVSCLSLLAAALIFLENDDVSLLLKKACLALFISSYADYFIKPSPLLDDVTVRLHVDDLIRPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPIAVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWPGLQCGGSNFGVLPHLPVVPTACVALALSLNIVGNWAGVMPVC 310          
BLAST of EWM24045.1 vs. NCBI_GenBank
Match: gi|298712987|emb|CBJ26889.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 160.614 bits (405), Expect = 8.670e-43
Identity = 82/198 (41.41%), Postives = 117/198 (59.09%), Query Frame = 0
Query:  112 LHVDDLIRPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPIAVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWPGLQCGGSNFGVLPHLPVVPTACVAFALSLNIVGNWAGVMPV 309
            L   D  RP++D LVW+S VY +  VY LY  QY    LQ++T  GS+L+H+ +E  FFN DN FA+SLL  T ++  + +    W +     +G P A+F IV CGMP  + R H  G G  + +  +YD +H  WH  SG GT++T HFF+ ++P  + GG  F   P +PVVPT  +A +  +N+ GN  GVMP+
Sbjct:  180 LETGDKRRPLTDMLVWTSFVYCLPSVYGLYAHQYGIAGLQLMTTIGSTLFHLTRETKFFNLDNVFATSLLSTTAWSLYLGVTHGVWWYVVVIGLGGPFAIFCIVRCGMPGLVCR-HPAGSGLCRRSNPEYDFFHMLWHLSSGLGTLITIHFFEVYFPAEEAGGGWFYFFPDVPVVPTVALALSALINLYGNRVGVMPL 376          
BLAST of EWM24045.1 vs. NCBI_GenBank
Match: gi|698823189|ref|XP_009844623.1| (hypothetical protein H257_17508 [Aphanomyces astaci] >gi|574100287|gb|ETV65870.1| hypothetical protein H257_17508 [Aphanomyces astaci])

HSP 1 Score: 73.1738 bits (178), Expect = 4.740e-12
Identity = 48/158 (30.38%), Postives = 70/158 (44.30%), Query Frame = 0
Query:  112 LHVDDLIRPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPIA-VFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWP 268
            L +  + R   D L+ ++ VY  A V S  LGQY    LQ+     SS++H  +E  +   D   + +L  + LY    A H+ D  H      GL +A  F  ++CGMP                   QY+ WH  WHF SG+ T+VT+     + P
Sbjct:   14 LRLSHIKREWHDPLILTNLVYVAASVISFALGQYTCAVLQLGASVASSMFHRHRETKYLPLDACISGNLGLIALYLSYHA-HLNDLHHVLGIKFGLGLACAFTFIYCGMPGD----------------AQYELWHRHWHFASGSTTLVTSVLLSLYIP 154          
BLAST of EWM24045.1 vs. NCBI_GenBank
Match: gi|301096587|ref|XP_002897390.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107081|gb|EEY65133.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 73.1738 bits (178), Expect = 8.619e-12
Identity = 44/151 (29.14%), Postives = 70/151 (46.36%), Query Frame = 0
Query:  119 RPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPI-AVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWP 268
            R   D+L++S+ VY +A + S    Q   G LQ+     S+++H  KE  +   D   + +L  + ++AG    +  +W    A  + L +  VF  ++CGMP                 G +YD WH  WH+VSGA T+ T  F   + P
Sbjct:   46 RAWCDRLIYSNLVYALAALISFSCDQNICGVLQMGAAIASTMFHRSKETKYLLLDALISGTLGIIFIFAGQHTFN-NEWYGILAIKLVLAVLCVFTWLYCGMPG----------------GERYDKWHNRWHYVSGATTISTTLFLTMYLP 179          
BLAST of EWM24045.1 vs. NCBI_GenBank
Match: gi|675202677|ref|XP_008910223.1| (hypothetical protein PPTG_14991 [Phytophthora parasitica INRA-310] >gi|566017022|gb|ETI39933.1| hypothetical protein F443_14545 [Phytophthora parasitica P1569] >gi|567954375|gb|ETK80012.1| hypothetical protein L915_14187 [Phytophthora parasitica] >gi|567983031|gb|ETL33433.1| hypothetical protein L916_14086 [Phytophthora parasitica] >gi|568012542|gb|ETL86720.1| hypothetical protein L917_13873 [Phytophthora parasitica] >gi|568042579|gb|ETM39904.1| hypothetical protein L914_13992 [Phytophthora parasitica] >gi|568089454|gb|ETN04296.1| hypothetical protein PPTG_14991 [Phytophthora parasitica INRA-310] >gi|570320677|gb|ETO68625.1| hypothetical protein F444_14555 [Phytophthora parasitica P1976] >gi|570944506|gb|ETP09763.1| hypothetical protein F441_14417 [Phytophthora parasitica CJ01A1] >gi|570975868|gb|ETP37785.1| hypothetical protein F442_14381 [Phytophthora parasitica P10297] >gi|970662874|gb|KUG00192.1| hypothetical protein AM587_10016680 [Phytophthora nicotianae])

HSP 1 Score: 73.1738 bits (178), Expect = 8.706e-12
Identity = 44/151 (29.14%), Postives = 71/151 (47.02%), Query Frame = 0
Query:  119 RPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPI-AVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWP 268
            R   D L++S+ VY +A + S    Q   G LQ+     S+++H  KE  +   D   + +L  + ++AG   ++ ++W    A  + L +  VF  ++CGMP                 G +YD WH  WH+VSGA T+ T  F   + P
Sbjct:   46 RAWCDSLIYSNLVYALAALISFSCDQNFCGVLQMGAAIASTMFHRSKETKYLLLDALISGTLGIIFIFAGQHTLN-KEWYGILAIKLVLAVLCVFTWLYCGMPG----------------GERYDKWHNRWHYVSGATTISTTLFLTMYMP 179          
BLAST of EWM24045.1 vs. NCBI_GenBank
Match: gi|695389596|ref|XP_009519480.1| (hypothetical protein PHYSODRAFT_482862 [Phytophthora sojae] >gi|348684377|gb|EGZ24192.1| hypothetical protein PHYSODRAFT_482862 [Phytophthora sojae])

HSP 1 Score: 72.4034 bits (176), Expect = 1.906e-11
Identity = 45/152 (29.61%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  119 RPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFA--TVVGLPIAVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWP 268
            R   D L++S+ VY +A + S    Q   G LQ+     S+++H  KE  +   D   + +L  + ++AG   +   +W    A  T++GL + +F  ++CGMP                 G +YD WH  WH+VSGA T+ T  F   + P
Sbjct:   47 RAWCDSLIYSNLVYALAALISFSCDQNFCGVLQMGAAVASTMFHRSKETKYLLLDALISGTLGVIFIFAGQHTL-TNEWYGILAIKTLLGL-LCIFTWLYCGMPG----------------GERYDKWHKRWHYVSGATTISTTLFLTMYLP 180          
BLAST of EWM24045.1 vs. NCBI_GenBank
Match: gi|1214696192|gb|OWZ09776.1| (hypothetical protein PHMEG_00017467 [Phytophthora megakarya])

HSP 1 Score: 70.8626 bits (172), Expect = 6.039e-11
Identity = 44/151 (29.14%), Postives = 68/151 (45.03%), Query Frame = 0
Query:  119 RPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPI-AVFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTAHFFQKHWP 268
            R   D L++S+ VY +A + S    Q   G +Q+     S+++H  KE  +   D   + SL  + ++AG   +   +W    A  V L +   F  ++CGMP                 G +YD WH  WH+VSGA T+ T  F   + P
Sbjct:   45 RAWCDSLIYSNLVYALAALISFSCDQNFCGVMQMGAAIASTMFHRSKETKYLLLDALISGSLGLVFIFAGQHTL-TNEWYGILAVKVLLGVLCTFTWLYCGMPG----------------GERYDKWHKRWHYVSGATTISTTLFLTMYMP 178          
BLAST of EWM24045.1 vs. NCBI_GenBank
Match: gi|673047303|ref|XP_008877612.1| (hypothetical protein H310_12366 [Aphanomyces invadans] >gi|574466776|gb|ETV93803.1| hypothetical protein H310_12366 [Aphanomyces invadans])

HSP 1 Score: 67.0106 bits (162), Expect = 8.322e-10
Identity = 43/150 (28.67%), Postives = 68/150 (45.33%), Query Frame = 0
Query:  112 LHVDDLIRPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQDWTHCFATVVGLPIA-VFLIVFCGMPASLAREHRHGPGFRQCAGRQYDDWHTAWHFVSGAGTVVTA 260
            L +  + R   D L+ ++ +Y  A + S  LGQY    LQ+     S+++H  +E  +   D   + +L  + LY    A H+ D  H       L +A  F  ++CGMP  +                QY+ WH  WHF SG+ T+VT+
Sbjct:   14 LRLSHIKREWHDPLILTNLIYVAASLVSFALGQYTCAMLQLGASIASTMFHRHRETKYLPLDACISGNLGVIALYLAYHA-HLNDLHHVLGIKFTLGLACAFTFIYCGMPGDV----------------QYELWHRHWHFASGSTTLVTS 146          
The following BLAST results are available for this feature:
BLAST of EWM24045.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585105336|gb|EWM24045.1|0.000e+0100.00hypothetical protein Naga_100280g9 [Nannochloropsi... [more]
gi|553185615|ref|XP_005854277.1|0.000e+099.68hypothetical protein NGA_0208300 [Nannochloropsis ... [more]
gi|298712987|emb|CBJ26889.1|8.670e-4341.41conserved unknown protein [Ectocarpus siliculosus][more]
gi|698823189|ref|XP_009844623.1|4.740e-1230.38hypothetical protein H257_17508 [Aphanomyces astac... [more]
gi|301096587|ref|XP_002897390.1|8.619e-1229.14conserved hypothetical protein [Phytophthora infes... [more]
gi|675202677|ref|XP_008910223.1|8.706e-1229.14hypothetical protein PPTG_14991 [Phytophthora para... [more]
gi|695389596|ref|XP_009519480.1|1.906e-1129.61hypothetical protein PHYSODRAFT_482862 [Phytophtho... [more]
gi|1214696192|gb|OWZ09776.1|6.039e-1129.14hypothetical protein PHMEG_00017467 [Phytophthora ... [more]
gi|673047303|ref|XP_008877612.1|8.322e-1028.67hypothetical protein H310_12366 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6647rna6647Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications