EWM24058.1, cds6621 (CDS) Nannochloropsis gaditana

Overview
NameEWM24058.1
Unique Namecds6621
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:141260..141304 +
Alignment locationCM002469.1:141401..141907 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24058.1
Productnudix hydrolase 1
Orig transcript idgnl|cribi|Naga_100063g25.3883.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:141260..141304 +
CM002469.1supercontigCM002469.1:141401..141907 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR020084NUDIX_hydrolase_CS
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
Homology
BLAST of EWM24058.1 vs. NCBI_GenBank
Match: gi|585105350|gb|EWM24058.1| (nudix hydrolase 1 [Nannochloropsis gaditana])

HSP 1 Score: 372.089 bits (954), Expect = 2.022e-130
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    1 MADHTGVEINNAGSQPIIDAHAHVRVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLEGLKERKTECFLPLQHALDTFLLRPGLLEDGLENGLRLNDCLQR 183
            MADHTGVEINNAGSQPIIDAHAHVRVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLEGLKERKTECFLPLQHALDTFLLRPGLLEDGLENGLRLNDCLQR
Sbjct:    1 MADHTGVEINNAGSQPIIDAHAHVRVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLEGLKERKTECFLPLQHALDTFLLRPGLLEDGLENGLRLNDCLQR 183          
BLAST of EWM24058.1 vs. NCBI_GenBank
Match: gi|553187219|ref|XP_005854567.1| (hypothetical protein NGA_2108100 [Nannochloropsis gaditana CCMP526] >gi|422294493|gb|EKU21793.1| hypothetical protein NGA_2108100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.479 bits (306), Expect = 1.736e-33
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query:  126 MEPEKCVAWEWLSLEGLKERKTECFLPLQHALDTFLLRPGLLEDGLENGLRLNDCLQR 183
            MEPEKCVAWEWLSLEGLKERKTECFLPLQHALDTFLLRPGLLEDGLENGLRLNDCLQR
Sbjct:    1 MEPEKCVAWEWLSLEGLKERKTECFLPLQHALDTFLLRPGLLEDGLENGLRLNDCLQR 58          
BLAST of EWM24058.1 vs. NCBI_GenBank
Match: gi|342320478|gb|EGU12418.1| (putative NUDIX domain [Rhodotorula toruloides ATCC 204091])

HSP 1 Score: 117.472 bits (293), Expect = 2.433e-30
Identity = 68/146 (46.58%), Postives = 91/146 (62.33%), Query Frame = 0
Query:   23 HVRVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLEGLKERKTE----CFLPLQHALDTFLLRP 164
            HV+VGVG  + ++  +G  +VG RKGSHG+G L LPGGHL+ GET   CAVRE+ EE  L +    VR +  T D+F E  +KHY+T+ V+  V   + P Q +EPEKC  WEW + E LKE  ++     FLPL+   + FL RP
Sbjct:    4 HVKVGVGCFLLNS--RGEFVVGVRKGSHGAGCLQLPGGHLDFGETPEACAVREVAEETGLAVREADVRFLTATNDIF-EADKKHYITMFVVCRVADDADP-QVLEPEKCERWEWHTWEQLKELVSDPSNRLFLPLR---NLFLQRP 142          
BLAST of EWM24058.1 vs. NCBI_GenBank
Match: gi|477532934|gb|ENH84528.1| (nudix domain protein [Colletotrichum orbiculare MAFF 240422])

HSP 1 Score: 116.701 bits (291), Expect = 4.304e-30
Identity = 69/150 (46.00%), Postives = 90/150 (60.00%), Query Frame = 0
Query:   14 SQPIIDAHAHVRVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLE-----GLKERKTECFLPLQHALD 158
            S P  D  AH RVGV  V+     +G VLVG RKGSHGSG+L LPGGHLE GE+   C  RE  EE NL +    V+++GVT D+F    R HYVT+ V   VL  + P + +EP KC  W+W + +     G +E + E F+PL+H L+
Sbjct:    2 SVPASDPFAHPRVGVAAVIS---RRGKVLVGLRKGSHGSGTLQLPGGHLEFGESFETCVEREALEETNLKVKG--VKVLGVTNDIFDAEGR-HYVTVFVGCEVLDDAEP-EVLEPTKCSWWQWKTWDEIRAFGTREGEAELFIPLRHFLE 144          
BLAST of EWM24058.1 vs. NCBI_GenBank
Match: gi|673041909|ref|XP_008874915.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574469637|gb|ETV96651.1| hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 120.553 bits (301), Expect = 9.693e-30
Identity = 63/142 (44.37%), Postives = 83/142 (58.45%), Query Frame = 0
Query:   25 RVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLEGLKE--RKTECFLPLQHALDTFLLRP 164
            RVGVGV++ S  +   VL+G RK SHG+G + LPGGHLE GE+   CA+RE+KEE  LD+    V    +T D  P+   KHY+T+ + A V     P Q MEP+KC  WEWL  E LK    +   F+PL H   +  + P
Sbjct:  188 RVGVGVLLYSAAYPACVLIGVRKASHGAGKVQLPGGHLEFGESWEECAIREVKEETALDI--VDVTFAHLTNDYMPD-DDKHYITIFMQATVQGNQVP-QCMEPDKCEGWEWLPYETLKSPAYQARLFMPLHHLTQSLFVPP 325          
BLAST of EWM24058.1 vs. NCBI_GenBank
Match: gi|635368988|emb|CCI42891.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 118.627 bits (296), Expect = 1.151e-29
Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   21 HAHVRVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLEGLKERKTECFLPLQHAL 157
            +A VRVGV +++ S  H G VL+GRR GSHG G LALPGGHLE  E+   CA+RE+KEE ++ L+      + VT D   EP  +HYVT+ + A++   S  ++NMEP KC +W W S   L++ +   F PL H +
Sbjct:  108 NACVRVGVAILLTSPQHSGCVLIGRRLGSHGEGKLALPGGHLEMYESWEECAIREVKEETDVTLER--AEFLFVTNDSM-EPEGRHYVTIFMHASINCDSQAIRNMEPHKCESWYWESWSKLEDSEN-LFTPLYHLI 240          
BLAST of EWM24058.1 vs. NCBI_GenBank
Match: gi|635368986|emb|CCI42889.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 118.627 bits (296), Expect = 1.276e-29
Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   21 HAHVRVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLEGLKERKTECFLPLQHAL 157
            +A VRVGV +++ S  H G VL+GRR GSHG G LALPGGHLE  E+   CA+RE+KEE ++ L+      + VT D   EP  +HYVT+ + A++   S  ++NMEP KC +W W S   L++ +   F PL H +
Sbjct:  113 NACVRVGVAILLTSPQHSGCVLIGRRLGSHGEGKLALPGGHLEMYESWEECAIREVKEETDVTLE--RAEFLFVTNDSM-EPEGRHYVTIFMHASINCDSQAIRNMEPHKCESWYWESWSKLEDSEN-LFTPLYHLI 245          
BLAST of EWM24058.1 vs. NCBI_GenBank
Match: gi|635368987|emb|CCI42890.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 119.013 bits (297), Expect = 3.154e-29
Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 0
Query:   21 HAHVRVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLEGLKERKTECFLPLQH 155
            +A VRVGV +++ S  H G VL+GRR GSHG G LALPGGHLE  E+   CA+RE+KEE ++ L+      + VT D   EP  +HYVT+ + A++   S  ++NMEP KC +W W S   L++ +   F PL H
Sbjct:  173 NACVRVGVAILLTSPQHSGCVLIGRRLGSHGEGKLALPGGHLEMYESWEECAIREVKEETDVTLE--RAEFLFVTNDSM-EPEGRHYVTIFMHASINCDSQAIRNMEPHKCESWYWESWSKLEDSEN-LFTPLYH 303          
BLAST of EWM24058.1 vs. NCBI_GenBank
Match: gi|1183431613|gb|ORY55854.1| (ADP-ribose pyrophosphatase [Pseudomassariella vexata])

HSP 1 Score: 114.39 bits (285), Expect = 4.826e-29
Identity = 66/156 (42.31%), Postives = 93/156 (59.62%), Query Frame = 0
Query:   25 RVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLEGLKER------------KTECFLPLQHALDTFLLRPGLLE 168
            RVGV V++Q+T  +G +++G+R+GSHGSG+ ALPGGHLE GET   CA RE +EE  LD+ A  V+LV VT DVF E   KHY+TL V   +       + +EPEKC  W W S   LK+             +   FLP+++ +  +   PG+++
Sbjct:    9 RVGVAVIIQNT--EGEIVLGKRRGSHGSGTWALPGGHLEFGETYFACAERETREETGLDVKA--VKLVAVTNDVFQELG-KHYITLFVTCELKDLHAEPKILEPEKCEGWHWTSWADLKQWAEHHEIESSEWAENRLFLPMRNLIKEY---PGIVD 156          
BLAST of EWM24058.1 vs. NCBI_GenBank
Match: gi|698800194|ref|XP_009833126.1| (hypothetical protein H257_08785 [Aphanomyces astaci] >gi|574111845|gb|ETV77339.1| hypothetical protein H257_08785 [Aphanomyces astaci])

HSP 1 Score: 118.242 bits (295), Expect = 9.661e-29
Identity = 63/133 (47.37%), Postives = 81/133 (60.90%), Query Frame = 0
Query:   25 RVGVGVVVQSTGHQGLVLVGRRKGSHGSGSLALPGGHLESGETIANCAVREIKEECNLDLDATSVRLVGVTQDVFPEPARKHYVTLIVIAAVLPRSPPLQNMEPEKCVAWEWLSLEGLKE--RKTECFLPLQH 155
            RVGVGV++ S  H   VL+G RK SHG+G + LPGGHLE GE+   CAVRE+KEE   DLD   V     T D+ P+   KHY+T+ + A V     P++ MEP+KC  WEW   E LK    +   F+PL+H
Sbjct:  194 RVGVGVLLYSAAHPSCVLIGVRKASHGAGKVQLPGGHLEFGESWEECAVREVKEET--DLDIGDVTFAHSTNDIMPDD-DKHYITIFMQATVRDGQVPVR-MEPDKCEGWEWQPWEHLKSPAFQARLFMPLRH 322          
The following BLAST results are available for this feature:
BLAST of EWM24058.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105350|gb|EWM24058.1|2.022e-130100.00nudix hydrolase 1 [Nannochloropsis gaditana][more]
gi|553187219|ref|XP_005854567.1|1.736e-33100.00hypothetical protein NGA_2108100 [Nannochloropsis ... [more]
gi|342320478|gb|EGU12418.1|2.433e-3046.58putative NUDIX domain [Rhodotorula toruloides ATCC... [more]
gi|477532934|gb|ENH84528.1|4.304e-3046.00nudix domain protein [Colletotrichum orbiculare MA... [more]
gi|673041909|ref|XP_008874915.1|9.693e-3044.37hypothetical protein, variant 1 [Aphanomyces invad... [more]
gi|635368988|emb|CCI42891.1|1.151e-2945.26unnamed protein product [Albugo candida][more]
gi|635368986|emb|CCI42889.1|1.276e-2945.26unnamed protein product [Albugo candida][more]
gi|635368987|emb|CCI42890.1|3.154e-2945.93unnamed protein product [Albugo candida][more]
gi|1183431613|gb|ORY55854.1|4.826e-2942.31ADP-ribose pyrophosphatase [Pseudomassariella vexa... [more]
gi|698800194|ref|XP_009833126.1|9.661e-2947.37hypothetical protein H257_08785 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6637rna6637Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications