EWM24090.1, cds6583 (CDS) Nannochloropsis gaditana

Overview
NameEWM24090.1
Unique Namecds6583
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:39531..40103 +

Link to JBrowse

Properties
Property NameValue
Start range39531
Start range.
Protein idEWM24090.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101954g1.819.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:39531..40103 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM24090.1 vs. NCBI_GenBank
Match: gi|585105401|gb|EWM24090.1| (hypothetical protein Naga_101954g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 349.362 bits (895), Expect = 3.198e-121
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 
Query:    1 PPSLPPSLPPAHLRQRRERHRLHPRARPPRAPPPSLPPRLPYPSSLPLPHHPPFQRHVLLHLSGPPFLPPALRLRLPPALRLAPVRGPEQRVPPSAGAGGGRACISYLWCVRSGTVRVSSYASHVEGSGASALPSPDPVVGECFLPFPLPPALGPFLPPALLLGEVPPFDFSSCPLTVRGENRSLLHRIG 190
            PPSLPPSLPPAHLRQRRERHRLHPRARPPRAPPPSLPPRLPYPSSLPLPHHPPFQRHVLLHLSGPPFLPPALRLRLPPALRLAPVRGPEQRVPPSAGAGGGRACISYLWCVRSGTVRVSSYASHVEGSGASALPSPDPVVGECFLPFPLPPALGPFLPPALLLGEVPPFDFSSCPLTVRGENRSLLHRIG
Sbjct:    1 PPSLPPSLPPAHLRQRRERHRLHPRARPPRAPPPSLPPRLPYPSSLPLPHHPPFQRHVLLHLSGPPFLPPALRLRLPPALRLAPVRGPEQRVPPSAGAGGGRACISYLWCVRSGTVRVSSYASHVEGSGASALPSPDPVVGECFLPFPLPPALGPFLPPALLLGEVPPFDFSSCPLTVRGENRSLLHRIG 190
The following BLAST results are available for this feature:
BLAST of EWM24090.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105401|gb|EWM24090.1|3.198e-121100.00hypothetical protein Naga_101954g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6599rna6599Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications