EWM24111.1, cds6561 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|585105446|gb|EWM24111.1| (hypothetical protein Naga_100660g1 [Nannochloropsis gaditana]) HSP 1 Score: 481.1 bits (1237), Expect = 9.381e-172 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0 Query: 1 MSLYCHAGQAPGPSSYCLPLPPPSLLFVPPPVMRTSVPSRFPRPLKMKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKREC 239 MSLYCHAGQAPGPSSYCLPLPPPSLLFVPPPVMRTSVPSRFPRPLKMKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKREC Sbjct: 1 MSLYCHAGQAPGPSSYCLPLPPPSLLFVPPPVMRTSVPSRFPRPLKMKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKREC 239
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|553177322|ref|XP_005852456.1| (hypothetical protein NGA_0717300, partial [Nannochloropsis gaditana CCMP526] >gi|422296078|gb|EKU23377.1| hypothetical protein NGA_0717300, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 179.104 bits (453), Expect = 1.720e-54 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 Query: 97 MAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDG 188 MAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDG Sbjct: 1 MAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDG 92
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|298712219|emb|CBJ33087.1| (Hypothetical UPF0043 protein slr0305 [Ectocarpus siliculosus]) HSP 1 Score: 121.709 bits (304), Expect = 2.776e-28 Identity = 80/207 (38.65%), Postives = 116/207 (56.04%), Query Frame = 0 Query: 31 PVMRTSVPSRFPRPLKMKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKR 237 P M + P+ P K+R + + H +E+W +RR ++R+ L L R+ + +A T E+ K ++V +A+ +AV A RLGGRAA++S +GLD D G+ + S L +G+G R F WVVAK C+D L++VL L SG++FGGV +GAL ST CAT AS +GF LART LR QV ++ Sbjct: 49 PNMNMNQPAEVPE----KLRQANLKAH-------IEVWDSRRDMTRATLSAAKALRGARESIAGEDVA-----TDSLVEDGKGSLVISAIALAVAAATLRLGGRAALVSALGLDFGEDTGIKENVESFLAFFDGLGPV-RYAYFLGGWVVAKTFCVDFLSIVLALGSGVVFGGVLQGALVSTACATIASGLGFQLARTTLRTQVEEQ 238
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|1210523231|dbj|GAX17868.1| (hypothetical protein FisN_18Hh072 [Fistulifera solaris]) HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20 Identity = 71/194 (36.60%), Postives = 103/194 (53.09%), Query Frame = 0 Query: 46 KMKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTR-ARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADA-GVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKR 237 ++ + SP + E +++ RR R+ LK L R R+ R A G K+E+ K A+ TA LVA R+GGRAA++S +GLD + ++ + +L S+L E M +LL+F + W K LCLD +VL LSSGILFGGV +GA+ S AT S + F LA+ L VR++ Sbjct: 33 RVVLNQSPHDDDEE--EARLQILTTRRKQIRAVLKSADAL--RESRIAALPRDADGNVLYTKKEEDTKTALTFTAFLVAAGAVALRVGGRAALVSAVGLDFMTESPELQQQLESILKTAETMDYTTKLLLFTAAWTAVKCLCLDAGGIVLALSSGILFGGVLQGAILSAAAATVGSSVAFGLAK--LNTPVRQK 220
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|1210516589|dbj|GAX24518.1| (hypothetical protein FisN_18Lh072 [Fistulifera solaris]) HSP 1 Score: 99.7525 bits (247), Expect = 1.571e-20 Identity = 71/192 (36.98%), Postives = 103/192 (53.65%), Query Frame = 0 Query: 44 PLKMKMRDSPRQKHAQWKEDE---MELWKARRGISRSFLKPVGMLTRRRDRL-TRARMAKG---LDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADA-GVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLAR 227 PL+ R Q +E+E +++ ARR R+ LK L R R+ + R A G LD + ++ K A+ TA ++A R+GGRAA++S +GLD + D+ + +L S+L E M +LL+F + W K LCLD +VL LSSGILFGGV +GA+ S AT S + F LA+ Sbjct: 31 PLRTTTRVVLHQTPHDEEEEETARLQILTARRKQIRAVLKSAETL--RESRIASLPRDANGNFLLDASSKGEDINKTALTLTAFVIAAGAVALRVGGRAALVSAVGLDFMTDSPELQQQLESILQTAETMNPITKLLLFTAAWTAVKCLCLDAGGIVLALSSGILFGGVLQGAVLSAAAATVGSSVAFGLAK 220
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|219113633|ref|XP_002186400.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583250|gb|ACI65870.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 96.6709 bits (239), Expect = 1.863e-19 Identity = 71/213 (33.33%), Postives = 105/213 (49.30%), Query Frame = 0 Query: 27 FVPPPVMRTSVPSRFPRPLKMKMRDSPRQKHAQWKE---DE---MELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGK-----KEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADA-GVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLAR 227 F P ++TSV R + R P+ K E +E +++WK+RR R LK D++ R+ +G P G K + K A+ TA ++A R+GGRAA++S +GLD + + + L VL+ + M +LL+F + W K LC D + L LSSGILFGGV +GA+ S AT S + F LA+ Sbjct: 196 FNAPLTIQTSVSIRLTVKRGIFSRAVPKIKAGNQDELMKEESVRLQVWKSRRNQIRQTLKSA-------DQVRIFRLQQGWVPELGDDGKPLKSDGKVALTLTAFVIAAGAIALRIGGRAALVSTLGLDFVTENPELKANLDIVLNTADNMDPVTKLLLFTASWTAVKVLCFDAAGVALALSSGILFGGVLQGAVVSAAAATFGSTVAFGLAK 401
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|676383425|ref|XP_009034991.1| (hypothetical protein AURANDRAFT_62763 [Aureococcus anophagefferens] >gi|323454297|gb|EGB10167.1| hypothetical protein AURANDRAFT_62763 [Aureococcus anophagefferens]) HSP 1 Score: 93.2041 bits (230), Expect = 4.746e-18 Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 0 Query: 108 KEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKL------TSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKR 237 + N V TA V VV V R GGRAA++ ++GLD+ AD + ++ + D++ G A LL++ ++VAK C+D L L +SSG+LFGGV GAL +T CAT S + F LAR Y R ++R++ Sbjct: 2169 SDAAANTVGTTAFGVVVVALVLRFGGRAALLQVLGLDVAADTEIAQRIDDFVAWSHSFDVIPGYEDATLLLLYCGAFIVAKVGCVDPLTFALAISSGVLFGGVVNGALVATACATIGSSVAFGLAR-YGRPRLREK 2303
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|922855994|gb|KOO24394.1| (hypothetical protein Ctob_008225 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 91.6633 bits (226), Expect = 1.158e-17 Identity = 65/180 (36.11%), Postives = 95/180 (52.78%), Query Frame = 0 Query: 60 WKED-----EMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQV 234 WKE E+W++R +R + + R A+ + + E K+A VA+A V + + R GGRAA++S +GLDI+AD G+ ++ VL E G ++ F W++AK +D +A+ L SSGILFGGV EGAL S V AT S I L+R L+E+V Sbjct: 53 WKEQMKETAAQEVWQSREEFARGSFRALISFKEDARETAEKRAARRQEGKSSEGEATKSAFVASAAAVLLGATLLRFGGRAALVSALGLDIVADLGIGDQIDQVLLYAEQAG-GWTVVAFIGAWMIAKVFLIDVIAIALAFSSGILFGGVLEGALISAVGATLGSLIALSLSRGLLQERV 231
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|224009850|ref|XP_002293883.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970555|gb|EED88892.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 89.3521 bits (220), Expect = 6.997e-17 Identity = 71/194 (36.60%), Postives = 97/194 (50.00%), Query Frame = 0 Query: 47 MKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGK--KEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADA-GVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKR 237 M D K Q +E M++ RR R LK + + RL + + LDP GK + K+AV TA +VA R+GGRAA++S +GLD + + L SVL + +G L +F W K C D +VL L+SGILFGGVW+GA+ S AT S I F +A+ L VRK+ Sbjct: 1 MSEEDEAELKRVQ-EESRMKVLTDRRKSIRGILKAAE--SSKNFRLQNGYVPE-LDPDTGKPISSDSKSAVAITAFVVAAGAVALRIGGRAALVSALGLDFATENPELREGLNSVLQYADTVGTETELALFILAWTAVKVFCFDAGGVVLALASGILFGGVWQGAVVSAFAATVGSSIAFGMAK--LDTPVRKK 188
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|397567581|gb|EJK45668.1| (hypothetical protein THAOC_35698 [Thalassiosira oceanica]) HSP 1 Score: 89.3521 bits (220), Expect = 8.792e-17 Identity = 60/140 (42.86%), Postives = 78/140 (55.71%), Query Frame = 0 Query: 101 LDPTGGK--KEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADA-GVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKR 237 LDP GK K + K+AV TA +VA + RLGGRAA++S +GLD ++ + L SVL MG L +F W V K C D +VL L+SGILFGGV +GA+ S AT S F LA+ + VRK+ Sbjct: 113 LDPETGKPIKSDGKSAVTITAFVVAGGAVLLRLGGRAALVSALGLDFASENPELKDGLESVLGYANTMGTESELFLFILAWTVVKVFCFDAGGVVLALASGILFGGVIQGAVVSAFAATVGSSAAFGLAK--IDTPVRKK 250 The following BLAST results are available for this feature:
BLAST of EWM24111.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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