EWM24111.1, cds6561 (CDS) Nannochloropsis gaditana

Overview
NameEWM24111.1
Unique Namecds6561
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:833911..834202 -
Alignment locationCM002468.1:833612..833708 -
Alignment locationCM002468.1:833173..833356 -
Alignment locationCM002468.1:832860..833006 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24111.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100660g1.6275.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:833911..834202 -
CM002468.1supercontigCM002468.1:833612..833708 -
CM002468.1supercontigCM002468.1:833173..833356 -
CM002468.1supercontigCM002468.1:832860..833006 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|585105446|gb|EWM24111.1| (hypothetical protein Naga_100660g1 [Nannochloropsis gaditana])

HSP 1 Score: 481.1 bits (1237), Expect = 9.381e-172
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MSLYCHAGQAPGPSSYCLPLPPPSLLFVPPPVMRTSVPSRFPRPLKMKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKREC 239
            MSLYCHAGQAPGPSSYCLPLPPPSLLFVPPPVMRTSVPSRFPRPLKMKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKREC
Sbjct:    1 MSLYCHAGQAPGPSSYCLPLPPPSLLFVPPPVMRTSVPSRFPRPLKMKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKREC 239          
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|553177322|ref|XP_005852456.1| (hypothetical protein NGA_0717300, partial [Nannochloropsis gaditana CCMP526] >gi|422296078|gb|EKU23377.1| hypothetical protein NGA_0717300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 179.104 bits (453), Expect = 1.720e-54
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query:   97 MAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDG 188
            MAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDG
Sbjct:    1 MAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDG 92          
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|298712219|emb|CBJ33087.1| (Hypothetical UPF0043 protein slr0305 [Ectocarpus siliculosus])

HSP 1 Score: 121.709 bits (304), Expect = 2.776e-28
Identity = 80/207 (38.65%), Postives = 116/207 (56.04%), Query Frame = 0
Query:   31 PVMRTSVPSRFPRPLKMKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKR 237
            P M  + P+  P     K+R +  + H       +E+W +RR ++R+ L     L   R+ +    +A     T    E+ K ++V +A+ +AV  A  RLGGRAA++S +GLD   D G+   + S L   +G+G   R   F   WVVAK  C+D L++VL L SG++FGGV +GAL ST CAT AS +GF LART LR QV ++
Sbjct:   49 PNMNMNQPAEVPE----KLRQANLKAH-------IEVWDSRRDMTRATLSAAKALRGARESIAGEDVA-----TDSLVEDGKGSLVISAIALAVAAATLRLGGRAALVSALGLDFGEDTGIKENVESFLAFFDGLGPV-RYAYFLGGWVVAKTFCVDFLSIVLALGSGVVFGGVLQGALVSTACATIASGLGFQLARTTLRTQVEEQ 238          
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|1210523231|dbj|GAX17868.1| (hypothetical protein FisN_18Hh072 [Fistulifera solaris])

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 71/194 (36.60%), Postives = 103/194 (53.09%), Query Frame = 0
Query:   46 KMKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTR-ARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADA-GVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKR 237
            ++ +  SP     +  E  +++   RR   R+ LK    L  R  R+    R A G      K+E+ K A+  TA LVA      R+GGRAA++S +GLD + ++  +  +L S+L   E M    +LL+F + W   K LCLD   +VL LSSGILFGGV +GA+ S   AT  S + F LA+  L   VR++
Sbjct:   33 RVVLNQSPHDDDEE--EARLQILTTRRKQIRAVLKSADAL--RESRIAALPRDADGNVLYTKKEEDTKTALTFTAFLVAAGAVALRVGGRAALVSAVGLDFMTESPELQQQLESILKTAETMDYTTKLLLFTAAWTAVKCLCLDAGGIVLALSSGILFGGVLQGAILSAAAATVGSSVAFGLAK--LNTPVRQK 220          
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|1210516589|dbj|GAX24518.1| (hypothetical protein FisN_18Lh072 [Fistulifera solaris])

HSP 1 Score: 99.7525 bits (247), Expect = 1.571e-20
Identity = 71/192 (36.98%), Postives = 103/192 (53.65%), Query Frame = 0
Query:   44 PLKMKMRDSPRQKHAQWKEDE---MELWKARRGISRSFLKPVGMLTRRRDRL-TRARMAKG---LDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADA-GVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLAR 227
            PL+   R    Q     +E+E   +++  ARR   R+ LK    L  R  R+ +  R A G   LD +   ++  K A+  TA ++A      R+GGRAA++S +GLD + D+  +  +L S+L   E M    +LL+F + W   K LCLD   +VL LSSGILFGGV +GA+ S   AT  S + F LA+
Sbjct:   31 PLRTTTRVVLHQTPHDEEEEETARLQILTARRKQIRAVLKSAETL--RESRIASLPRDANGNFLLDASSKGEDINKTALTLTAFVIAAGAVALRVGGRAALVSAVGLDFMTDSPELQQQLESILQTAETMNPITKLLLFTAAWTAVKCLCLDAGGIVLALSSGILFGGVLQGAVLSAAAATVGSSVAFGLAK 220          
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|219113633|ref|XP_002186400.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583250|gb|ACI65870.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 96.6709 bits (239), Expect = 1.863e-19
Identity = 71/213 (33.33%), Postives = 105/213 (49.30%), Query Frame = 0
Query:   27 FVPPPVMRTSVPSRFPRPLKMKMRDSPRQKHAQWKE---DE---MELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGK-----KEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADA-GVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLAR 227
            F  P  ++TSV  R      +  R  P+ K     E   +E   +++WK+RR   R  LK         D++   R+ +G  P  G      K + K A+  TA ++A      R+GGRAA++S +GLD + +   +   L  VL+  + M    +LL+F + W   K LC D   + L LSSGILFGGV +GA+ S   AT  S + F LA+
Sbjct:  196 FNAPLTIQTSVSIRLTVKRGIFSRAVPKIKAGNQDELMKEESVRLQVWKSRRNQIRQTLKSA-------DQVRIFRLQQGWVPELGDDGKPLKSDGKVALTLTAFVIAAGAIALRIGGRAALVSTLGLDFVTENPELKANLDIVLNTADNMDPVTKLLLFTASWTAVKVLCFDAAGVALALSSGILFGGVLQGAVVSAAAATFGSTVAFGLAK 401          
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|676383425|ref|XP_009034991.1| (hypothetical protein AURANDRAFT_62763 [Aureococcus anophagefferens] >gi|323454297|gb|EGB10167.1| hypothetical protein AURANDRAFT_62763 [Aureococcus anophagefferens])

HSP 1 Score: 93.2041 bits (230), Expect = 4.746e-18
Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 0
Query:  108 KEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKL------TSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKR 237
             +   N V  TA  V VV  V R GGRAA++ ++GLD+ AD  +  ++      +   D++ G   A  LL++   ++VAK  C+D L   L +SSG+LFGGV  GAL +T CAT  S + F LAR Y R ++R++
Sbjct: 2169 SDAAANTVGTTAFGVVVVALVLRFGGRAALLQVLGLDVAADTEIAQRIDDFVAWSHSFDVIPGYEDATLLLLYCGAFIVAKVGCVDPLTFALAISSGVLFGGVVNGALVATACATIGSSVAFGLAR-YGRPRLREK 2303          
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|922855994|gb|KOO24394.1| (hypothetical protein Ctob_008225 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 91.6633 bits (226), Expect = 1.158e-17
Identity = 65/180 (36.11%), Postives = 95/180 (52.78%), Query Frame = 0
Query:   60 WKED-----EMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGKKEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQV 234
            WKE        E+W++R   +R   + +             R A+  +    + E  K+A VA+A  V +   + R GGRAA++S +GLDI+AD G+  ++  VL   E  G    ++ F   W++AK   +D +A+ L  SSGILFGGV EGAL S V AT  S I   L+R  L+E+V
Sbjct:   53 WKEQMKETAAQEVWQSREEFARGSFRALISFKEDARETAEKRAARRQEGKSSEGEATKSAFVASAAAVLLGATLLRFGGRAALVSALGLDIVADLGIGDQIDQVLLYAEQAG-GWTVVAFIGAWMIAKVFLIDVIAIALAFSSGILFGGVLEGALISAVGATLGSLIALSLSRGLLQERV 231          
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|224009850|ref|XP_002293883.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970555|gb|EED88892.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 89.3521 bits (220), Expect = 6.997e-17
Identity = 71/194 (36.60%), Postives = 97/194 (50.00%), Query Frame = 0
Query:   47 MKMRDSPRQKHAQWKEDEMELWKARRGISRSFLKPVGMLTRRRDRLTRARMAKGLDPTGGK--KEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADA-GVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKR 237
            M   D    K  Q +E  M++   RR   R  LK     + +  RL    + + LDP  GK    + K+AV  TA +VA      R+GGRAA++S +GLD   +   +   L SVL   + +G    L +F   W   K  C D   +VL L+SGILFGGVW+GA+ S   AT  S I F +A+  L   VRK+
Sbjct:    1 MSEEDEAELKRVQ-EESRMKVLTDRRKSIRGILKAAE--SSKNFRLQNGYVPE-LDPDTGKPISSDSKSAVAITAFVVAAGAVALRIGGRAALVSALGLDFATENPELREGLNSVLQYADTVGTETELALFILAWTAVKVFCFDAGGVVLALASGILFGGVWQGAVVSAFAATVGSSIAFGMAK--LDTPVRKK 188          
BLAST of EWM24111.1 vs. NCBI_GenBank
Match: gi|397567581|gb|EJK45668.1| (hypothetical protein THAOC_35698 [Thalassiosira oceanica])

HSP 1 Score: 89.3521 bits (220), Expect = 8.792e-17
Identity = 60/140 (42.86%), Postives = 78/140 (55.71%), Query Frame = 0
Query:  101 LDPTGGK--KEEVKNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADA-GVTGKLTSVLDMVEGMGKAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVRKR 237
            LDP  GK  K + K+AV  TA +VA    + RLGGRAA++S +GLD  ++   +   L SVL     MG    L +F   W V K  C D   +VL L+SGILFGGV +GA+ S   AT  S   F LA+  +   VRK+
Sbjct:  113 LDPETGKPIKSDGKSAVTITAFVVAGGAVLLRLGGRAALVSALGLDFASENPELKDGLESVLGYANTMGTESELFLFILAWTVVKVFCFDAGGVVLALASGILFGGVIQGAVVSAFAATVGSSAAFGLAK--IDTPVRKK 250          
The following BLAST results are available for this feature:
BLAST of EWM24111.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105446|gb|EWM24111.1|9.381e-172100.00hypothetical protein Naga_100660g1 [Nannochloropsi... [more]
gi|553177322|ref|XP_005852456.1|1.720e-54100.00hypothetical protein NGA_0717300, partial [Nannoch... [more]
gi|298712219|emb|CBJ33087.1|2.776e-2838.65Hypothetical UPF0043 protein slr0305 [Ectocarpus s... [more]
gi|1210523231|dbj|GAX17868.1|1.048e-2036.60hypothetical protein FisN_18Hh072 [Fistulifera sol... [more]
gi|1210516589|dbj|GAX24518.1|1.571e-2036.98hypothetical protein FisN_18Lh072 [Fistulifera sol... [more]
gi|219113633|ref|XP_002186400.1|1.863e-1933.33predicted protein, partial [Phaeodactylum tricornu... [more]
gi|676383425|ref|XP_009034991.1|4.746e-1839.71hypothetical protein AURANDRAFT_62763 [Aureococcus... [more]
gi|922855994|gb|KOO24394.1|1.158e-1736.11hypothetical protein Ctob_008225 [Chrysochromulina... [more]
gi|224009850|ref|XP_002293883.1|6.997e-1736.60predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397567581|gb|EJK45668.1|8.792e-1742.86hypothetical protein THAOC_35698 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6577rna6577Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications