EWM24113.1, cds6560 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24113.1 vs. NCBI_GenBank
Match: gi|585105449|gb|EWM24113.1| (hypothetical protein Naga_101247g1 [Nannochloropsis gaditana]) HSP 1 Score: 682.945 bits (1761), Expect = 0.000e+0 Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0
Query: 1 MPSFSPSLPPSLPFPLLLPDTLFLQPFFIPYTRSLSYDCCSLIKALRHLEVPSLSQSLILSPSLPPTLPPALPPSLPPSLPHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQEALMTVPLKEGETEAQWDWWTMMGVERPKGNVWTEEWGRLETAVEDEWKKLMEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ 345
MPSFSPSLPPSLPFPLLLPDTLFLQPFFIPYTRSLSYDCCSLIKALRHLEVPSLSQSLILSPSLPPTLPPALPPSLPPSLPHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQEALMTVPLKEGETEAQWDWWTMMGVERPKGNVWTEEWGRLETAVEDEWKKLMEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ
Sbjct: 1 MPSFSPSLPPSLPFPLLLPDTLFLQPFFIPYTRSLSYDCCSLIKALRHLEVPSLSQSLILSPSLPPTLPPALPPSLPPSLPHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQEALMTVPLKEGETEAQWDWWTMMGVERPKGNVWTEEWGRLETAVEDEWKKLMEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ 345
BLAST of EWM24113.1 vs. NCBI_GenBank
Match: gi|553178512|ref|XP_005852563.1| (hypothetical protein NGA_0728900 [Nannochloropsis gaditana CCMP526] >gi|422295971|gb|EKU23270.1| hypothetical protein NGA_0728900 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 251.521 bits (641), Expect = 5.662e-81 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query: 218 MEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ 345
MEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ
Sbjct: 1 MEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ 128
BLAST of EWM24113.1 vs. NCBI_GenBank
Match: gi|298712219|emb|CBJ33087.1| (Hypothetical UPF0043 protein slr0305 [Ectocarpus siliculosus]) HSP 1 Score: 77.411 bits (189), Expect = 5.263e-12 Identity = 72/236 (30.51%), Postives = 105/236 (44.49%), Query Frame = 0
Query: 45 ALRHLE--VPSLSQSLILSPSLPPTLPPALPPSLPPSLPHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQEALMTVPLKEGETEA-----------------QWDWWTMMGVERPKGNVWTEEWGRLETAVEDEWKKLMEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIP 261
ALR LE V +++ L P LP L + + +S+ + FL G+ GSLKPY LD+YLGV+GK ++ GE G G D+A L GTFF++VLVG A Q+A R ++E EA ++P ET +W + G+ER W W + AV + + +++ QE E Y R EG+G + E+P
Sbjct: 244 ALRALEKVVSEEGFKTVVTLRLAPVLPIPLGAY---NYVYGTTSLPLPVFLSGMAVGSLKPYLLDSYLGVFGKQMVD-----GEAGVGGDLA----LVGTFFVVVLVGTFASQVASRTWEELNAEAEKSMP-TAAETNTPPGGVPSASQEGGGGGDGLEWLDLWGIERSSLPDWFTTWKAKDNAVRSKIRGVVK----QERE---------------YMEGREAAEGEGVDGAELP 447
BLAST of EWM24113.1 vs. NCBI_GenBank
Match: gi|1072237098|gb|OEU21825.1| (hypothetical protein FRACYDRAFT_258815 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 64.3142 bits (155), Expect = 9.914e-8 Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 0
Query: 45 ALRHLEVPSLSQSL--ILSPSLPPTLPPALPPSLPPSLPHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEG-GGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFD 162
+LR LE + L +L+ L P LP +P + + + S++ ++F GIF GSLKPYFLD+YLG +GK L+ + A GG Q +L G VL+G A Q+A +D
Sbjct: 124 SLRGLEKVVADEGLKAVLTLRLAPILP--IPLGMY-NYVYGVSNIRYWEFAGGIFLGSLKPYFLDSYLGYFGKSLVDGSAAAQAAENGGAGTLQDYVLIGVLGFSVLIGVFASQLAAETWD 241
BLAST of EWM24113.1 vs. NCBI_GenBank
Match: gi|224009850|ref|XP_002293883.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970555|gb|EED88892.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 63.1586 bits (152), Expect = 2.427e-7 Identity = 62/201 (30.85%), Postives = 90/201 (44.78%), Query Frame = 0
Query: 50 EVPSLS--QSLILSPSLPPTLPPALPPSLPPSL-----PHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQE-----ALMTVPLKEGETEAQWDWWT--MMGVERPKGNVWTEEW--------GRLETAVEDEWKKLMEDLAAQEEET 228
E PSL + ++ L L L P LP L + ++V DF GIF GSLKPY LD+YLGV+GK + V+ GE G Q +L + VL+G A Q+A ++ +E A EG +D T MG++ PK W + R+ T +EDE+ + + A+E E+
Sbjct: 195 EYPSLRGIEKVVAKDGLKAILTLRLAPVLPIPLGIYNYVYGVTNVPYLDFAGGIFLGSLKPYLLDSYLGVFGKQI--VDGTAGEVGS----LQDALLLVALGVSVLIGVFASQLANETWESINEEVEREKAEKAAAEGEGGEIDDYDGITREFMGMDVPK---WIIGFQLALQAADKRVNTMIEDEYHAKVWNYTAEELES 386 The following BLAST results are available for this feature:
BLAST of EWM24113.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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