EWM24113.1, cds6560 (CDS) Nannochloropsis gaditana

Overview
NameEWM24113.1
Unique Namecds6560
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:831936..832254 -
Alignment locationCM002468.1:831574..831719 -
Alignment locationCM002468.1:831326..831400 -
Alignment locationCM002468.1:831006..831098 -
Alignment locationCM002468.1:830645..830878 -
Alignment locationCM002468.1:830312..830482 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24113.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101247g1.2176.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:831936..832254 -
CM002468.1supercontigCM002468.1:831574..831719 -
CM002468.1supercontigCM002468.1:831326..831400 -
CM002468.1supercontigCM002468.1:831006..831098 -
CM002468.1supercontigCM002468.1:830645..830878 -
CM002468.1supercontigCM002468.1:830312..830482 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24113.1 vs. NCBI_GenBank
Match: gi|585105449|gb|EWM24113.1| (hypothetical protein Naga_101247g1 [Nannochloropsis gaditana])

HSP 1 Score: 682.945 bits (1761), Expect = 0.000e+0
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0
Query:    1 MPSFSPSLPPSLPFPLLLPDTLFLQPFFIPYTRSLSYDCCSLIKALRHLEVPSLSQSLILSPSLPPTLPPALPPSLPPSLPHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQEALMTVPLKEGETEAQWDWWTMMGVERPKGNVWTEEWGRLETAVEDEWKKLMEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ 345
            MPSFSPSLPPSLPFPLLLPDTLFLQPFFIPYTRSLSYDCCSLIKALRHLEVPSLSQSLILSPSLPPTLPPALPPSLPPSLPHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQEALMTVPLKEGETEAQWDWWTMMGVERPKGNVWTEEWGRLETAVEDEWKKLMEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ
Sbjct:    1 MPSFSPSLPPSLPFPLLLPDTLFLQPFFIPYTRSLSYDCCSLIKALRHLEVPSLSQSLILSPSLPPTLPPALPPSLPPSLPHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQEALMTVPLKEGETEAQWDWWTMMGVERPKGNVWTEEWGRLETAVEDEWKKLMEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ 345          
BLAST of EWM24113.1 vs. NCBI_GenBank
Match: gi|553178512|ref|XP_005852563.1| (hypothetical protein NGA_0728900 [Nannochloropsis gaditana CCMP526] >gi|422295971|gb|EKU23270.1| hypothetical protein NGA_0728900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 251.521 bits (641), Expect = 5.662e-81
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query:  218 MEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ 345
            MEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ
Sbjct:    1 MEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIPGGKDEDILAVVPPNTPEGTVHRTSVASQLVGILLFPFVLLGGATGRLSEALSSSPSRLSTLAASSAPSEEEGEEGVDIPPPSLQ 128          
BLAST of EWM24113.1 vs. NCBI_GenBank
Match: gi|298712219|emb|CBJ33087.1| (Hypothetical UPF0043 protein slr0305 [Ectocarpus siliculosus])

HSP 1 Score: 77.411 bits (189), Expect = 5.263e-12
Identity = 72/236 (30.51%), Postives = 105/236 (44.49%), Query Frame = 0
Query:   45 ALRHLE--VPSLSQSLILSPSLPPTLPPALPPSLPPSLPHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQEALMTVPLKEGETEA-----------------QWDWWTMMGVERPKGNVWTEEWGRLETAVEDEWKKLMEDLAAQEEETGERQRDRISPHPASYTTRRGGKEGKGREEQEIP 261
            ALR LE  V       +++  L P LP  L      +  +  +S+ +  FL G+  GSLKPY LD+YLGV+GK ++      GE G G D+A    L GTFF++VLVG  A Q+A R ++E   EA  ++P    ET                     +W  + G+ER     W   W   + AV  + + +++    QE E               Y   R   EG+G +  E+P
Sbjct:  244 ALRALEKVVSEEGFKTVVTLRLAPVLPIPLGAY---NYVYGTTSLPLPVFLSGMAVGSLKPYLLDSYLGVFGKQMVD-----GEAGVGGDLA----LVGTFFVVVLVGTFASQVASRTWEELNAEAEKSMP-TAAETNTPPGGVPSASQEGGGGGDGLEWLDLWGIERSSLPDWFTTWKAKDNAVRSKIRGVVK----QERE---------------YMEGREAAEGEGVDGAELP 447          
BLAST of EWM24113.1 vs. NCBI_GenBank
Match: gi|1072237098|gb|OEU21825.1| (hypothetical protein FRACYDRAFT_258815 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 64.3142 bits (155), Expect = 9.914e-8
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 0
Query:   45 ALRHLEVPSLSQSL--ILSPSLPPTLPPALPPSLPPSLPHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEG-GGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFD 162
            +LR LE     + L  +L+  L P LP  +P  +  +  +  S++  ++F  GIF GSLKPYFLD+YLG +GK L+  + A      GG    Q  +L G     VL+G  A Q+A   +D
Sbjct:  124 SLRGLEKVVADEGLKAVLTLRLAPILP--IPLGMY-NYVYGVSNIRYWEFAGGIFLGSLKPYFLDSYLGYFGKSLVDGSAAAQAAENGGAGTLQDYVLIGVLGFSVLIGVFASQLAAETWD 241          
BLAST of EWM24113.1 vs. NCBI_GenBank
Match: gi|224009850|ref|XP_002293883.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970555|gb|EED88892.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 63.1586 bits (152), Expect = 2.427e-7
Identity = 62/201 (30.85%), Postives = 90/201 (44.78%), Query Frame = 0
Query:   50 EVPSLS--QSLILSPSLPPTLPPALPPSLPPSL-----PHAPSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKQE-----ALMTVPLKEGETEAQWDWWT--MMGVERPKGNVWTEEW--------GRLETAVEDEWKKLMEDLAAQEEET 228
            E PSL   + ++    L   L   L P LP  L      +  ++V   DF  GIF GSLKPY LD+YLGV+GK +  V+   GE G      Q  +L     + VL+G  A Q+A   ++   +E     A       EG     +D  T   MG++ PK   W   +         R+ T +EDE+   + +  A+E E+
Sbjct:  195 EYPSLRGIEKVVAKDGLKAILTLRLAPVLPIPLGIYNYVYGVTNVPYLDFAGGIFLGSLKPYLLDSYLGVFGKQI--VDGTAGEVGS----LQDALLLVALGVSVLIGVFASQLANETWESINEEVEREKAEKAAAEGEGGEIDDYDGITREFMGMDVPK---WIIGFQLALQAADKRVNTMIEDEYHAKVWNYTAEELES 386          
The following BLAST results are available for this feature:
BLAST of EWM24113.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585105449|gb|EWM24113.1|0.000e+0100.00hypothetical protein Naga_101247g1 [Nannochloropsi... [more]
gi|553178512|ref|XP_005852563.1|5.662e-81100.00hypothetical protein NGA_0728900 [Nannochloropsis ... [more]
gi|298712219|emb|CBJ33087.1|5.263e-1230.51Hypothetical UPF0043 protein slr0305 [Ectocarpus s... [more]
gi|1072237098|gb|OEU21825.1|9.914e-836.36hypothetical protein FRACYDRAFT_258815 [Fragilario... [more]
gi|224009850|ref|XP_002293883.1|2.427e-730.85predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6576rna6576Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications