EWM30017.1, cds655 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30017.1 vs. NCBI_GenBank
Match: gi|585112640|gb|EWM30017.1| (zinc finger ccch domain-containing protein 63 [Nannochloropsis gaditana]) HSP 1 Score: 1004.59 bits (2596), Expect = 0.000e+0 Identity = 492/492 (100.00%), Postives = 492/492 (100.00%), Query Frame = 0
Query: 1 MSDEARANERCHHYISSSKVARRGEAAVHASSLLQQHKKKKPARHLLSWDSPVLLTPSKGGVIGRGGRGHSGRGGPGVNQAGQGAPFQCKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTYSWTPGTGITGCKEQNGGGPGSFFTTSDPTHAFYFYGFRQPLVPGLSSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGSDPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPGGRAGGREGGGAYVTSLVTLNPGIIATGSSDGVLKVWSVHRPAVGIGGGGA 492
MSDEARANERCHHYISSSKVARRGEAAVHASSLLQQHKKKKPARHLLSWDSPVLLTPSKGGVIGRGGRGHSGRGGPGVNQAGQGAPFQCKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTYSWTPGTGITGCKEQNGGGPGSFFTTSDPTHAFYFYGFRQPLVPGLSSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGSDPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPGGRAGGREGGGAYVTSLVTLNPGIIATGSSDGVLKVWSVHRPAVGIGGGGA
Sbjct: 1 MSDEARANERCHHYISSSKVARRGEAAVHASSLLQQHKKKKPARHLLSWDSPVLLTPSKGGVIGRGGRGHSGRGGPGVNQAGQGAPFQCKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTYSWTPGTGITGCKEQNGGGPGSFFTTSDPTHAFYFYGFRQPLVPGLSSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGSDPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPGGRAGGREGGGAYVTSLVTLNPGIIATGSSDGVLKVWSVHRPAVGIGGGGA 492
BLAST of EWM30017.1 vs. NCBI_GenBank
Match: gi|553186653|ref|XP_005854461.1| (zinc finger ccch domain-containing protein 63, partial [Nannochloropsis gaditana CCMP526] >gi|422294594|gb|EKU21894.1| zinc finger ccch domain-containing protein 63, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 779.63 bits (2012), Expect = 0.000e+0 Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0
Query: 66 GGRGHSGRGGPGVNQAGQGAPFQCKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTYSWTPGTGITGCKEQNGGGPGSFFTTSDPTHAFYFYGFRQPLVPGLSSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGSDPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPGGR 444
GGRGHSGRGGPGVNQAGQGAPFQCKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTYSWTPGTGITGCKEQNGGGPGSFFTTSDPTHAFYFYGFRQPLVPGLSSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGSDPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPGGR
Sbjct: 44 GGRGHSGRGGPGVNQAGQGAPFQCKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTYSWTPGTGITGCKEQNGGGPGSFFTTSDPTHAFYFYGFRQPLVPGLSSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGSDPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPGGR 422
BLAST of EWM30017.1 vs. NCBI_GenBank
Match: gi|971514184|dbj|GAQ84025.1| (WD40 repeat-containing protein [Klebsormidium nitens]) HSP 1 Score: 71.2478 bits (173), Expect = 1.578e-9 Identity = 107/417 (25.66%), Postives = 155/417 (37.17%), Query Frame = 0
Query: 89 CKHTLDGTCSWGPSRCRYVHGVDFHANGVD------LEAHKGAIRGLASDANC--LYTFGEDGIIKTYSWTPGTGITGCKEQNGGGPGSFFTTSDPTHAFYFYGF--------RQPLVPGLSSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNC-ASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQ-GGNLGVTLPLDFPTGAAVKLCQVAAGGE---GGGSDPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPGGRAGGREGGGAYVTSLVTLNPGIIATGSSDGVLKVWSVHRPA 484
C++ L G+C G + C ++H HA D L+ H+ A+R +A A LYT +D I+ W TG GG G+ T + F F G Q P S VG+ L V ++ +F+ +DG I W N F T GHT PV L AA + LYS +D +IR W+ A+ A T TA HE V SL+C Q +L + S D ++R+W + G L T AV+ Q G G D AG LV AY + + LP + ++ Y+ + V +L+ G++ TG S G++KVW+ + A
Sbjct: 173 CRYWLGGSCRNG-ANCNFLH---VHATAPDVDLMTELKGHEKAVRAIALPAGSSELYTGSQDQSIRV--WDCETGQCKSVVPMGGDVGALLTEA----GFLFVGLPNEIKVWNMQSAPPAQHSLPGHVGQVH--------SLAVGNN-----------------------MLFSGAQDGTIRCWVLNTTSQNFEHVGTLSGHTAPVVTLQCAANK----LYSGSMDKSIRVWDLTANGACIQTLTA-------------HENVV------MSLLCWDQ-YLISCSLDNTIRVWGLNPAGQLENTYTYPEVEAGAVRAAQTPQDGALALCGSLDEAG---KPILVCAYNDNSVRLYDLPTFQERGIL---YSSRE-------------VRTLLAGPSGLLFTGDSAGLVKVWTWKKAA 505
BLAST of EWM30017.1 vs. NCBI_GenBank
Match: gi|813167532|ref|XP_012203862.1| (hypothetical protein SPRG_09378, partial [Saprolegnia parasitica CBS 223.65] >gi|641531360|gb|KDO25436.1| hypothetical protein SPRG_09378, partial [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 70.8626 bits (172), Expect = 1.723e-9 Identity = 89/362 (24.59%), Postives = 132/362 (36.46%), Query Frame = 0
Query: 89 CKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTY---SWTPGTGITGCK-----------EQNGGGPGSFFTTSDPTHAFYFYGFRQ--PLVPGLSSETSLVGRAQMF-FNNAST---DLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHAL-EWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQ-GGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGSDPAGLGPPSFLVVAYESGHMVFWTLPGLE 428
C LD C CR H F H G +R +A +T DG ++ + S I CK ++ G S S F F G+ + P +P + VGR Q + N S +L S + P+ R V + + PA P IF+ G DGRI W ++A F GH +T L + L S+ D TIR W+ A++ S A G GH + D+ V G+ FL +S D + +W + + T LD P A+ LC +G L++ ++ G +V LP +
Sbjct: 44 CTFHLDDRCQ--RDNCRAPH---FLKRLGMASGHNGTVRDVALWGQQAFTASSDGTLRLWALDSMKEAAVIPQCKIEIDTLPVEKSKKVTEGVSSLLLES----PFLFVGYEEQTPAIPDVP-----VGRIQCWNLENPSMPPMELAQSAEMPFAMYRNVTSLAMAKHPATGAPIIFSGGADGRIAYWMFDAATNAFTCAGVMEGHALAITRLKVVQLGATTALISSSRDHTIRIWDVATYKCGTVLSRATG-------------GHANIVLDIEIWVSNGEPFLISSGYDQQIIVWQLSPPFAVMYTETLDSP---ALALCTTTDAVDG-----------PLLLLGHDDGSIVIKELPSFK 364
BLAST of EWM30017.1 vs. NCBI_GenBank
Match: gi|299471884|emb|CBN77054.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 68.1662 bits (165), Expect = 1.067e-8 Identity = 97/414 (23.43%), Postives = 169/414 (40.82%), Query Frame = 0
Query: 89 CKHTLDGTCSWGPSRCRYVHGVDFHANGV---DLEAHKGAIRGLA---SDANCLYTFGEDGIIKTYSWTPG---TGITGCKEQNGGGPGSFFTTSDPTHAFYFYGFRQPLVPGLSSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQ--SFLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGSDPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPP--YAG--KPGGRAGGREGGGAYVTSLV-----TLNPGIIATGSSDGVLKVWSVHR 482
CK G C S CR+ H V + V + + +GA+R L + +++ +DG +K +S T G T +T + G + G+ P ++ ++ M + ST VS + ++ + ++ A P ++T E+GRI +W+ + A F A GH R +T+L+ A+ +L+S+ DGTIR WN ++A T +++ HEG V + + EG ++ + S+DG++ ++ Q + G+T TG + +AA DP G + L+V YE G + P I P Y G KP V +L+ +++ G + DG + W+VH+
Sbjct: 69 CKFYAAGNCDRAAS-CRHRHAVQKVSEAVVSEESDGFRGAVRSLVQWKDKPDHVFSACDDGTVKMWSTTDGSTWTQVTSVQMTEWRHVGDL----QEVEGVLYVGYGTPY--AHLADVTVDALRVMDLTSGSTQEVVSSVTGFAHASRINRIMVAKVGAE--PRVYTGDEEGRITAWARPSPGAPFAQLAQLEGHARAITSLVSTASNG--MLWSSSEDGTIRIWNTGTNACVHT---------ITKDNGGHEGPVAALA-IGQSAAEGTLAEYVISGSKDGTMGVF--QAADGGLTYKHKCGTGVSA----IAA------FDPTP-GTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKP-------------VLALLPFNNPSIDDGYFLSAGEDGTMMCWNVHK 435
BLAST of EWM30017.1 vs. NCBI_GenBank
Match: gi|1101779694|gb|OIR58783.1| (U3 small nucleolar RNA-interacting protein 2, RRP9 [Amphiamblys sp. WSBS2006]) HSP 1 Score: 65.855 bits (159), Expect = 3.587e-8 Identity = 58/239 (24.27%), Postives = 90/239 (37.66%), Query Frame = 0
Query: 248 GEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQS-FLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGSDPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPGGRAGGREGGGAYVTSLVTLNPGIIATGSSDGVLKVWSVHRPAV 485
GE+G ++ WS + + T H PVT L LY+A LD I W + A + GH GI +C CE ++ L+ D +VR+W + V + PTG A +C + A G+D +G ++ W L G+P G A + LV ++ + A+GS+DGVLK+W + +
Sbjct: 97 GENGNVFFWSVETRK----IVRTIKAHNAPVTGLCFGREAKKGFLYAASLDRKITTWCTRTFA----------------AAETLYGHQAGIATLC---CEKENELLSAGLGDKTVRVWKLNEKKNLVFETKNEPTGFATAVCALDADRFVSGTD---------------TGSVLVWDLA------------HGEPVAHKHKAHGEKAPIEVLVRVDGSLFASGSTDGVLKIWRAGKDKI 285
BLAST of EWM30017.1 vs. NCBI_GenBank
Match: gi|669153390|ref|XP_008612257.1| (hypothetical protein SDRG_08165 [Saprolegnia diclina VS20] >gi|530736153|gb|EQC34395.1| hypothetical protein SDRG_08165 [Saprolegnia diclina VS20]) HSP 1 Score: 66.6254 bits (161), Expect = 3.850e-8 Identity = 75/299 (25.08%), Postives = 110/299 (36.79%), Query Frame = 0
Query: 89 CKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTY---SWTPGTGITGCK-----------EQNGGGPGSFFTTSDPTHAFYFYGFRQ--PLVPGLSSETSLVGRAQMF-FNNAST---DLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHAL-EWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSI 366
C LD C CR H F H G +R +A +T DG ++ + + I CK ++ G S S F F G+ + P +P + VGR Q + N S +L S + P+ R V + + PA P IF+ G DGRI W ++A F GH +T L + L S+ D TIR W+ A++ S A G GH + D+ V G+ FL +S D + +W +
Sbjct: 43 CTFHLDDRCQ--RDNCRAPH---FLKRLGMASGHNGTVRDVALWGQQAFTASSDGTLRLWALDTMKEAAVIPQCKIEIDTLPVEKSKKVTEGVSSLLLES----PFLFVGYEEQTPAIPDVP-----VGRIQCWNLENPSMPPMELAQSVEMPFAMYRNVTSLAMAKHPATGAPIIFSGGADGRIAYWMFDAATNAFTCAGVMEGHALAITRLKVVQLGATTALISSSRDHTIRIWDVATYKCGTVLSRATG-------------GHANIVLDIEIWVSNGEPFLISSGYDQQIIVWQL 314
BLAST of EWM30017.1 vs. NCBI_GenBank
Match: gi|573931857|ref|XP_006651037.1| (PREDICTED: zinc finger CCCH domain-containing protein 48-like [Oryza brachyantha]) HSP 1 Score: 65.855 bits (159), Expect = 6.084e-8 Identity = 42/144 (29.17%), Postives = 65/144 (45.14%), Query Frame = 0
Query: 236 MPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQGGNLGVTLPLDF 379
M A H+F EDG +Y W N EQ F A GH + V +L + LYS DG+IR W+ +H ++ GH +T +L+C + FL +SS DG+V++W + + G+ L + +
Sbjct: 218 MLAEDDMHLFAGAEDGAVYMWRMNQEQQSFDEVAALTGHDKAVVSL----AQGKGALYSGSADGSIRVWDLETHRCIYSFA----------------GHSSAVT---ALLC-WERFLLSSSDDGTVKVWQSRPDHDGLDLEVHY 337
BLAST of EWM30017.1 vs. NCBI_GenBank
Match: gi|1173953135|gb|OQS00699.1| (hypothetical protein THRCLA_05892 [Thraustotheca clavata]) HSP 1 Score: 65.855 bits (159), Expect = 6.288e-8 Identity = 52/192 (27.08%), Postives = 80/192 (41.67%), Query Frame = 0
Query: 182 FYGFRQPL--VPGLSSETSLVGRAQMF-FNNAS---TDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEPPQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQ 367
F GF +P +P + VGR Q + N + + VS + P+ R V A + P IF+ DGRI W Y+A F G GH+R +T L L S+ +D TIR W+ + F+ + + ++GH + D+ V G+ FL + D V +W +Q
Sbjct: 132 FVGFEEPTAAIPDVP-----VGRIQCWNLENPAAPPMEFMVSPEMPFAHYRNVWALAVAKDPTTGAIIIFSGSGDGRIRYWMYDAATQAFKCGGVMEGHSRGITRLKTVQLGAAMALISSSMDHTIRIWDLTT------------FKCATVLSRANDGHANVVMDIEVWVNNGEQFLISGGLDQQVIVWRLQ 306
BLAST of EWM30017.1 vs. NCBI_GenBank
Match: gi|397580738|gb|EJK51688.1| (hypothetical protein THAOC_29115, partial [Thalassiosira oceanica]) HSP 1 Score: 64.3142 bits (155), Expect = 1.876e-7 Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 0
Query: 244 IFTAGEDGRIYSWSYNAE----QARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNC----ASHALEWTSTAVGVFRRLS-EPPQPHEGHVEGITDMC--SLVCEGQSFLATSSQDGSVRIWSIQGGN 370
+++ G DG I W++N + + FV+ TY GH VT + L L+S+G+DGT+R WNC +H + G + P Q GH I ++ L +G SF+ +SS DG+V++W+ G+
Sbjct: 223 VWSGGSDGIIRQWAFNPQGPDGKPGFVLTKTYYGHLGAVTGIALVKGN----LWSSGMDGTLRIWNCDKAEQAHLIPANKNDRGNQNNGNPTPAQKGPGHSGPINEIVPFELPNDGGSFIMSSSNDGTVKVWNATNGD 356 The following BLAST results are available for this feature:
BLAST of EWM30017.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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