EWM24133.1, cds6539 (CDS) Nannochloropsis gaditana

Overview
NameEWM24133.1
Unique Namecds6539
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:787329..787358 -
Alignment locationCM002468.1:786807..787077 -
Alignment locationCM002468.1:786275..786420 -
Alignment locationCM002468.1:786015..786026 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24133.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101164g1.9045.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:787329..787358 -
CM002468.1supercontigCM002468.1:786807..787077 -
CM002468.1supercontigCM002468.1:786275..786420 -
CM002468.1supercontigCM002468.1:786015..786026 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM24133.1 vs. NCBI_GenBank
Match: gi|585105489|gb|EWM24133.1| (hypothetical protein Naga_101164g1 [Nannochloropsis gaditana])

HSP 1 Score: 307.375 bits (786), Expect = 7.608e-106
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 
Query:    1 MGGRKKCLQKATHMHTDTRSNGSTQKHSSSLPPPPSIPVLSFPYPSRETFQARYLEKYHPCLLRRAAQYYLPKTLALCGKGEGEPTGFVDFLRDSLPPSTVLELSCTPRGKPFSGAAAHAQTLPVPLSTFLLLFRHAHRPTAPSRGMARGKK 152
            MGGRKKCLQKATHMHTDTRSNGSTQKHSSSLPPPPSIPVLSFPYPSRETFQARYLEKYHPCLLRRAAQYYLPKTLALCGKGEGEPTGFVDFLRDSLPPSTVLELSCTPRGKPFSGAAAHAQTLPVPLSTFLLLFRHAHRPTAPSRGMARGKK
Sbjct:    1 MGGRKKCLQKATHMHTDTRSNGSTQKHSSSLPPPPSIPVLSFPYPSRETFQARYLEKYHPCLLRRAAQYYLPKTLALCGKGEGEPTGFVDFLRDSLPPSTVLELSCTPRGKPFSGAAAHAQTLPVPLSTFLLLFRHAHRPTAPSRGMARGKK 152
The following BLAST results are available for this feature:
BLAST of EWM24133.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105489|gb|EWM24133.1|7.608e-106100.00hypothetical protein Naga_101164g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6555rna6555Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications