EWM24186.1, cds6488 (CDS) Nannochloropsis gaditana

Overview
NameEWM24186.1
Unique Namecds6488
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:662644..662821 +
Alignment locationCM002468.1:663049..663800 +
Alignment locationCM002468.1:664058..666946 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24186.1
Productpaired amphipathic helix protein sin3b
Orig transcript idgnl|cribi|Naga_100390g3.3637.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:662644..662821 +
CM002468.1supercontigCM002468.1:663049..663800 +
CM002468.1supercontigCM002468.1:664058..666946 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR003822PAH
Homology
BLAST of EWM24186.1 vs. NCBI_GenBank
Match: gi|585105571|gb|EWM24186.1| (paired amphipathic helix protein sin3b [Nannochloropsis gaditana])

HSP 1 Score: 2475.28 bits (6414), Expect = 0.000e+0
Identity = 1272/1272 (100.00%), Postives = 1272/1272 (100.00%), Query Frame = 0
Query:    1 MDRQNKATGGSGLFSGNMSSGPGASGTNSPRPYQQQQQPPPPLHSRPRDMPVGAPPVYQRPSLTGAGLFTSAGGGMASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNALAYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCVQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPFLPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPETYARFLEIIKSFQDELPDTARVLEAVTQIFQGRDDLIQGFNCFLPAAHRLPPPKGLPGARGGGEGGSLQGGEEGGGEGEGEAGQAQMQGAIEFTDQVRATFQNQPGVYLEFLRVMRAFQGGEMGIGEVMKRVGRMFQDHPSLLDGFNRFLPPQYRMPAPQGKAPAPAGGWEGGEEDVGEADALDFMDRVRSTFTARPEVYVAFLEVMRGFQAGALRTEGVMQEVGRLFAGEEALLRGFNAFLPHGYRMPSVPPSAPPFQRPSPPGVPGRAGSGGGEGSGGGGGEGGGGGDGGEGERDVEFAANFIENVRNRFAADPARYQTFLEVLQRHEEEGKEGGLAETEQLAKTVSELFRGHEDLLKDFAHFLPGPVRAALGLMGPEEDGKLPEGEGGGGEGEGKKPAEEKEEGGEEEMGMADAFKFLQRVREKIGAENEEKYNEFLDVLRGYEEKEIVPAEATRRVEALLGGDTELWEEFKGFLPDVGRREEEDEDEDEEDDEGQEEEEEEEGREEVESLLVKVRVFFAKRPTEGTRLVEALEGAMNVEGGQGGSGSDRKKKWEETKERVMQVAREVLKEEGEESGMRKELEEWMAGKEGEKTKEVGSGDQAGGVVEGAVRGGGGERAEARGKEGGMDVEKGGQAGGEGGRGTGGGRRDGKEEEEVGRGEGGAGKGTEKENSPRGKKRKAGEGDEGEEEVEEEEEGEEEELVIMDEDMTDDEEGKEEGGEKNAGKGAEKEEEGKEGELGGGKGAEEDGGEGDPGIGPKESRKKEASGGEASGDKVDPKGKGKREEEGGREGGRDGGREGGAEETGEEETSGAVGTGEVPALGKEGGREEGGEEGGGPGGGHEGNSPGAVKPSPPTSTPRSSPPSVSPSSGPRKRSLAEVMGKEGAVEVMGKEEAGPVDGEGRSSNHTGLGQDKASSPVQGNLLKGGGSDEGGKEGGQEGGQEGGKECLSRADASPSGL 1272
            MDRQNKATGGSGLFSGNMSSGPGASGTNSPRPYQQQQQPPPPLHSRPRDMPVGAPPVYQRPSLTGAGLFTSAGGGMASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNALAYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCVQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPFLPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPETYARFLEIIKSFQDELPDTARVLEAVTQIFQGRDDLIQGFNCFLPAAHRLPPPKGLPGARGGGEGGSLQGGEEGGGEGEGEAGQAQMQGAIEFTDQVRATFQNQPGVYLEFLRVMRAFQGGEMGIGEVMKRVGRMFQDHPSLLDGFNRFLPPQYRMPAPQGKAPAPAGGWEGGEEDVGEADALDFMDRVRSTFTARPEVYVAFLEVMRGFQAGALRTEGVMQEVGRLFAGEEALLRGFNAFLPHGYRMPSVPPSAPPFQRPSPPGVPGRAGSGGGEGSGGGGGEGGGGGDGGEGERDVEFAANFIENVRNRFAADPARYQTFLEVLQRHEEEGKEGGLAETEQLAKTVSELFRGHEDLLKDFAHFLPGPVRAALGLMGPEEDGKLPEGEGGGGEGEGKKPAEEKEEGGEEEMGMADAFKFLQRVREKIGAENEEKYNEFLDVLRGYEEKEIVPAEATRRVEALLGGDTELWEEFKGFLPDVGRREEEDEDEDEEDDEGQEEEEEEEGREEVESLLVKVRVFFAKRPTEGTRLVEALEGAMNVEGGQGGSGSDRKKKWEETKERVMQVAREVLKEEGEESGMRKELEEWMAGKEGEKTKEVGSGDQAGGVVEGAVRGGGGERAEARGKEGGMDVEKGGQAGGEGGRGTGGGRRDGKEEEEVGRGEGGAGKGTEKENSPRGKKRKAGEGDEGEEEVEEEEEGEEEELVIMDEDMTDDEEGKEEGGEKNAGKGAEKEEEGKEGELGGGKGAEEDGGEGDPGIGPKESRKKEASGGEASGDKVDPKGKGKREEEGGREGGRDGGREGGAEETGEEETSGAVGTGEVPALGKEGGREEGGEEGGGPGGGHEGNSPGAVKPSPPTSTPRSSPPSVSPSSGPRKRSLAEVMGKEGAVEVMGKEEAGPVDGEGRSSNHTGLGQDKASSPVQGNLLKGGGSDEGGKEGGQEGGQEGGKECLSRADASPSGL
Sbjct:    1 MDRQNKATGGSGLFSGNMSSGPGASGTNSPRPYQQQQQPPPPLHSRPRDMPVGAPPVYQRPSLTGAGLFTSAGGGMASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNALAYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCVQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPFLPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPETYARFLEIIKSFQDELPDTARVLEAVTQIFQGRDDLIQGFNCFLPAAHRLPPPKGLPGARGGGEGGSLQGGEEGGGEGEGEAGQAQMQGAIEFTDQVRATFQNQPGVYLEFLRVMRAFQGGEMGIGEVMKRVGRMFQDHPSLLDGFNRFLPPQYRMPAPQGKAPAPAGGWEGGEEDVGEADALDFMDRVRSTFTARPEVYVAFLEVMRGFQAGALRTEGVMQEVGRLFAGEEALLRGFNAFLPHGYRMPSVPPSAPPFQRPSPPGVPGRAGSGGGEGSGGGGGEGGGGGDGGEGERDVEFAANFIENVRNRFAADPARYQTFLEVLQRHEEEGKEGGLAETEQLAKTVSELFRGHEDLLKDFAHFLPGPVRAALGLMGPEEDGKLPEGEGGGGEGEGKKPAEEKEEGGEEEMGMADAFKFLQRVREKIGAENEEKYNEFLDVLRGYEEKEIVPAEATRRVEALLGGDTELWEEFKGFLPDVGRREEEDEDEDEEDDEGQEEEEEEEGREEVESLLVKVRVFFAKRPTEGTRLVEALEGAMNVEGGQGGSGSDRKKKWEETKERVMQVAREVLKEEGEESGMRKELEEWMAGKEGEKTKEVGSGDQAGGVVEGAVRGGGGERAEARGKEGGMDVEKGGQAGGEGGRGTGGGRRDGKEEEEVGRGEGGAGKGTEKENSPRGKKRKAGEGDEGEEEVEEEEEGEEEELVIMDEDMTDDEEGKEEGGEKNAGKGAEKEEEGKEGELGGGKGAEEDGGEGDPGIGPKESRKKEASGGEASGDKVDPKGKGKREEEGGREGGRDGGREGGAEETGEEETSGAVGTGEVPALGKEGGREEGGEEGGGPGGGHEGNSPGAVKPSPPTSTPRSSPPSVSPSSGPRKRSLAEVMGKEGAVEVMGKEEAGPVDGEGRSSNHTGLGQDKASSPVQGNLLKGGGSDEGGKEGGQEGGQEGGKECLSRADASPSGL 1272          
BLAST of EWM24186.1 vs. NCBI_GenBank
Match: gi|585105572|gb|EWM24187.1| (paired amphipathic helix protein sin3b [Nannochloropsis gaditana])

HSP 1 Score: 2321.97 bits (6016), Expect = 0.000e+0
Identity = 1197/1197 (100.00%), Postives = 1197/1197 (100.00%), Query Frame = 0
Query:   76 MASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNALAYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCVQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPFLPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPETYARFLEIIKSFQDELPDTARVLEAVTQIFQGRDDLIQGFNCFLPAAHRLPPPKGLPGARGGGEGGSLQGGEEGGGEGEGEAGQAQMQGAIEFTDQVRATFQNQPGVYLEFLRVMRAFQGGEMGIGEVMKRVGRMFQDHPSLLDGFNRFLPPQYRMPAPQGKAPAPAGGWEGGEEDVGEADALDFMDRVRSTFTARPEVYVAFLEVMRGFQAGALRTEGVMQEVGRLFAGEEALLRGFNAFLPHGYRMPSVPPSAPPFQRPSPPGVPGRAGSGGGEGSGGGGGEGGGGGDGGEGERDVEFAANFIENVRNRFAADPARYQTFLEVLQRHEEEGKEGGLAETEQLAKTVSELFRGHEDLLKDFAHFLPGPVRAALGLMGPEEDGKLPEGEGGGGEGEGKKPAEEKEEGGEEEMGMADAFKFLQRVREKIGAENEEKYNEFLDVLRGYEEKEIVPAEATRRVEALLGGDTELWEEFKGFLPDVGRREEEDEDEDEEDDEGQEEEEEEEGREEVESLLVKVRVFFAKRPTEGTRLVEALEGAMNVEGGQGGSGSDRKKKWEETKERVMQVAREVLKEEGEESGMRKELEEWMAGKEGEKTKEVGSGDQAGGVVEGAVRGGGGERAEARGKEGGMDVEKGGQAGGEGGRGTGGGRRDGKEEEEVGRGEGGAGKGTEKENSPRGKKRKAGEGDEGEEEVEEEEEGEEEELVIMDEDMTDDEEGKEEGGEKNAGKGAEKEEEGKEGELGGGKGAEEDGGEGDPGIGPKESRKKEASGGEASGDKVDPKGKGKREEEGGREGGRDGGREGGAEETGEEETSGAVGTGEVPALGKEGGREEGGEEGGGPGGGHEGNSPGAVKPSPPTSTPRSSPPSVSPSSGPRKRSLAEVMGKEGAVEVMGKEEAGPVDGEGRSSNHTGLGQDKASSPVQGNLLKGGGSDEGGKEGGQEGGQEGGKECLSRADASPSGL 1272
            MASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNALAYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCVQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPFLPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPETYARFLEIIKSFQDELPDTARVLEAVTQIFQGRDDLIQGFNCFLPAAHRLPPPKGLPGARGGGEGGSLQGGEEGGGEGEGEAGQAQMQGAIEFTDQVRATFQNQPGVYLEFLRVMRAFQGGEMGIGEVMKRVGRMFQDHPSLLDGFNRFLPPQYRMPAPQGKAPAPAGGWEGGEEDVGEADALDFMDRVRSTFTARPEVYVAFLEVMRGFQAGALRTEGVMQEVGRLFAGEEALLRGFNAFLPHGYRMPSVPPSAPPFQRPSPPGVPGRAGSGGGEGSGGGGGEGGGGGDGGEGERDVEFAANFIENVRNRFAADPARYQTFLEVLQRHEEEGKEGGLAETEQLAKTVSELFRGHEDLLKDFAHFLPGPVRAALGLMGPEEDGKLPEGEGGGGEGEGKKPAEEKEEGGEEEMGMADAFKFLQRVREKIGAENEEKYNEFLDVLRGYEEKEIVPAEATRRVEALLGGDTELWEEFKGFLPDVGRREEEDEDEDEEDDEGQEEEEEEEGREEVESLLVKVRVFFAKRPTEGTRLVEALEGAMNVEGGQGGSGSDRKKKWEETKERVMQVAREVLKEEGEESGMRKELEEWMAGKEGEKTKEVGSGDQAGGVVEGAVRGGGGERAEARGKEGGMDVEKGGQAGGEGGRGTGGGRRDGKEEEEVGRGEGGAGKGTEKENSPRGKKRKAGEGDEGEEEVEEEEEGEEEELVIMDEDMTDDEEGKEEGGEKNAGKGAEKEEEGKEGELGGGKGAEEDGGEGDPGIGPKESRKKEASGGEASGDKVDPKGKGKREEEGGREGGRDGGREGGAEETGEEETSGAVGTGEVPALGKEGGREEGGEEGGGPGGGHEGNSPGAVKPSPPTSTPRSSPPSVSPSSGPRKRSLAEVMGKEGAVEVMGKEEAGPVDGEGRSSNHTGLGQDKASSPVQGNLLKGGGSDEGGKEGGQEGGQEGGKECLSRADASPSGL
Sbjct:    1 MASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNALAYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCVQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPFLPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPETYARFLEIIKSFQDELPDTARVLEAVTQIFQGRDDLIQGFNCFLPAAHRLPPPKGLPGARGGGEGGSLQGGEEGGGEGEGEAGQAQMQGAIEFTDQVRATFQNQPGVYLEFLRVMRAFQGGEMGIGEVMKRVGRMFQDHPSLLDGFNRFLPPQYRMPAPQGKAPAPAGGWEGGEEDVGEADALDFMDRVRSTFTARPEVYVAFLEVMRGFQAGALRTEGVMQEVGRLFAGEEALLRGFNAFLPHGYRMPSVPPSAPPFQRPSPPGVPGRAGSGGGEGSGGGGGEGGGGGDGGEGERDVEFAANFIENVRNRFAADPARYQTFLEVLQRHEEEGKEGGLAETEQLAKTVSELFRGHEDLLKDFAHFLPGPVRAALGLMGPEEDGKLPEGEGGGGEGEGKKPAEEKEEGGEEEMGMADAFKFLQRVREKIGAENEEKYNEFLDVLRGYEEKEIVPAEATRRVEALLGGDTELWEEFKGFLPDVGRREEEDEDEDEEDDEGQEEEEEEEGREEVESLLVKVRVFFAKRPTEGTRLVEALEGAMNVEGGQGGSGSDRKKKWEETKERVMQVAREVLKEEGEESGMRKELEEWMAGKEGEKTKEVGSGDQAGGVVEGAVRGGGGERAEARGKEGGMDVEKGGQAGGEGGRGTGGGRRDGKEEEEVGRGEGGAGKGTEKENSPRGKKRKAGEGDEGEEEVEEEEEGEEEELVIMDEDMTDDEEGKEEGGEKNAGKGAEKEEEGKEGELGGGKGAEEDGGEGDPGIGPKESRKKEASGGEASGDKVDPKGKGKREEEGGREGGRDGGREGGAEETGEEETSGAVGTGEVPALGKEGGREEGGEEGGGPGGGHEGNSPGAVKPSPPTSTPRSSPPSVSPSSGPRKRSLAEVMGKEGAVEVMGKEEAGPVDGEGRSSNHTGLGQDKASSPVQGNLLKGGGSDEGGKEGGQEGGQEGGKECLSRADASPSGL 1197          
BLAST of EWM24186.1 vs. NCBI_GenBank
Match: gi|553177672|ref|XP_005852485.1| (transcriptional repressor sin3p, partial [Nannochloropsis gaditana CCMP526] >gi|422296048|gb|EKU23347.1| transcriptional repressor sin3p, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0
Identity = 308/311 (99.04%), Postives = 308/311 (99.04%), Query Frame = 0
Query:    1 MDRQNKATGGSGLFSGNMSSGPGASGTNSPRPYQQQQQPPPPLHSRPRDMPVGAPPVYQRPSLTGAGLFTSAGGGMASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNALAYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCVQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPFLPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPET 311
            MDRQNKATGGSGLFSGNMSSGPGASGTNSPRPYQQQQQPPPPLHSRPRDMPVGAPPVYQRPSLTGAGLFTSAGGGMASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNAL YLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLC QVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPFLPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPE 
Sbjct:    1 MDRQNKATGGSGLFSGNMSSGPGASGTNSPRPYQQQQQPPPPLHSRPRDMPVGAPPVYQRPSLTGAGLFTSAGGGMASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNALVYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCGQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPFLPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPEV 311          

HSP 2 Score: 68.9366 bits (167), Expect = 2.082e-8
Identity = 63/204 (30.88%), Postives = 89/204 (43.63%), Query Frame = 0
Query:  461 PPQYRMPAPQGKAPAPAGGWEGGEEDVGEA---DALDFMDRVRSTFTARPEVYVAFLEVMRGFQAGALRTEGVMQEVGRLFAGEEALLRGFNAFL-----------------------------PHGYR----MPSVPPSAPPFQRPSPPGVPGRAGSGGGEGSGGGGGEGGGGGDGGEGERDVEF--AANFIENVRNRFAADP 626
            PP Y +P     AP+PA            A   +AL +++ V+ TF  +P++Y +FL VMR  + G   T  +  +V RLF G+++LLRGF  FL                             P GYR     PS PPS PPF       +PG  G+G       G  EG     GGE + DV    A  +++ V++ +A  P
Sbjct:  123 PPSYSLPY---NAPSPAFPGRPSMPPSHAALMQNALVYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCGQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPF-------LPG--GNGTRPPLQTGVTEG-----GGEAKEDVSMEDAVLYMDRVKSAYADKP 309          

HSP 3 Score: 65.855 bits (159), Expect = 1.682e-7
Identity = 46/164 (28.05%), Postives = 80/164 (48.78%), Query Frame = 0
Query:  291 MEDAVLYMDRVKSAYADKPETYARFLEIIKSFQDELPDTARVLEAVTQIFQGRDDLIQGFNCFLPAAHRLPPPKGLP------------------GARG----------------GGEGG--SLQGG-EEGGGEGEGEAGQAQMQGAIEFTDQVRATFQNQPGV 417
            M++A++Y++ V+  +A +P+ YA FL +++  ++   DT  +   V+++FQG+D L++GF  FL   H + PP   P                  G RG                GG G    LQ G  EGGGE + +     M+ A+ + D+V++ + ++P V
Sbjct:  151 MQNALVYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCGQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPPSHPPFLPGGNGTRPPLQTGVTEGGGEAKED---VSMEDAVLYMDRVKSAYADKPEV 311          
BLAST of EWM24186.1 vs. NCBI_GenBank
Match: gi|553193381|ref|XP_005855765.1| (transcriptional repressor sin3p, partial [Nannochloropsis gaditana CCMP526] >gi|422293306|gb|EKU20606.1| transcriptional repressor sin3p, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 533.872 bits (1374), Expect = 3.007e-177
Identity = 256/258 (99.22%), Postives = 256/258 (99.22%), Query Frame = 0
Query:    1 MDRQNKATGGSGLFSGNMSSGPGASGTNSPRPYQQQQQPPPPLHSRPRDMPVGAPPVYQRPSLTGAGLFTSAGGGMASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNALAYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCVQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPP 258
            MDRQNKATGGSGLFSGNMSSGPGASGTNSPRPYQQQQQPPPPLHSRPRDMPVGAPPVYQRPSLTGAGLFTSAGGGMASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNAL YLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLC QVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPP
Sbjct:    1 MDRQNKATGGSGLFSGNMSSGPGASGTNSPRPYQQQQQPPPPLHSRPRDMPVGAPPVYQRPSLTGAGLFTSAGGGMASLFANPNSSLPAASSNFQGLYSGSNAHLMNNNASKPGQDWHRGLPPPSYSLPYNAPSPAFPGRPSMPPSHAALMQNALVYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCGQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSPAPSVPGPASFPHSMGHPSGYRGWNARPSAPP 258          

HSP 2 Score: 63.929 bits (154), Expect = 3.839e-7
Identity = 25/73 (34.25%), Postives = 48/73 (65.75%), Query Frame = 0
Query:  291 MEDAVLYMDRVKSAYADKPETYARFLEIIKSFQDELPDTARVLEAVTQIFQGRDDLIQGFNCFLPAAHRLPPP 363
            M++A++Y++ V+  +A +P+ YA FL +++  ++   DT  +   V+++FQG+D L++GF  FL   H + PP
Sbjct:  151 MQNALVYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCGQVSRLFQGQDSLLRGFQDFLSGIHAVDPP 223          
BLAST of EWM24186.1 vs. NCBI_GenBank
Match: gi|553193357|ref|XP_005855759.1| (paired amphipathic helix repeat-containing protein [Nannochloropsis gaditana CCMP526] >gi|422293300|gb|EKU20600.1| paired amphipathic helix repeat-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 202.216 bits (513), Expect = 3.957e-56
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query:  724 MADAFKFLQRVREKIGAENEEKYNEFLDVLRGYEEKEIVPAEATRRVEALLGGDTELWEEFKGFLPDVGRREEEDEDEDEEDDEGQEEEEEEEGREEVESLLVK 827
            MADAFKFLQRVREKIGAENEEKYNEFLDVLRGYEEKEIVPAEATRRVEALLGGDTELWEEFKGFLPDVGRREEEDEDEDEEDDEGQEEEEEEEGREEVESLLVK
Sbjct:    1 MADAFKFLQRVREKIGAENEEKYNEFLDVLRGYEEKEIVPAEATRRVEALLGGDTELWEEFKGFLPDVGRREEEDEDEDEEDDEGQEEEEEEEGREEVESLLVK 104          

HSP 2 Score: 134.42 bits (337), Expect = 1.991e-32
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 0
Query: 1195 GKEGAVEVMGKEEAGPVDGEGRSSNHTGLGQDKASSPVQGNLLKGGGSDEGGKEGGQEGGQEGGKECLSRADASPSGL 1272
            G+E    ++ KEEAGPVDGEGRSSNHTGLGQDKASSPVQGNLLKGGGSDEGGKEGGQEGGQEGGKECLSRADASPSGL
Sbjct:   94 GREEVESLLVKEEAGPVDGEGRSSNHTGLGQDKASSPVQGNLLKGGGSDEGGKEGGQEGGQEGGKECLSRADASPSGL 171          
The following BLAST results are available for this feature:
BLAST of EWM24186.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585105571|gb|EWM24186.1|0.000e+0100.00paired amphipathic helix protein sin3b [Nannochlor... [more]
gi|585105572|gb|EWM24187.1|0.000e+0100.00paired amphipathic helix protein sin3b [Nannochlor... [more]
gi|553177672|ref|XP_005852485.1|2.082e-899.04transcriptional repressor sin3p, partial [Nannochl... [more]
gi|553193381|ref|XP_005855765.1|3.007e-17799.22transcriptional repressor sin3p, partial [Nannochl... [more]
gi|553193357|ref|XP_005855759.1|3.957e-56100.00paired amphipathic helix repeat-containing protein... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6504rna6504Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications