EWM24200.1, cds6472 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24200.1 vs. NCBI_GenBank
Match: gi|585105588|gb|EWM24200.1| (mitochondrial carrier protein [Nannochloropsis gaditana]) HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query: 1 MVLRRPEKEAGGSHHPLARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVLEARGQ 322
MVLRRPEKEAGGSHHPLARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVLEARGQ
Sbjct: 1 MVLRRPEKEAGGSHHPLARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVLEARGQ 322
BLAST of EWM24200.1 vs. NCBI_GenBank
Match: gi|661178369|emb|CDH58852.1| (mitochondrial carrier protein [Lichtheimia corymbifera JMRC:FSU:9682]) HSP 1 Score: 281.952 bits (720), Expect = 1.432e-90 Identity = 138/312 (44.23%), Postives = 192/312 (61.54%), Query Frame = 0
Query: 6 PEKEAGGSHHPLARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVL 317
P +G S ARF+GS+SS + EL+IF P+DT KR++++Q R+ A G S+T + +V+FR+ + + K SL+ GL F A YKI QR +G QPFV DY++ +H + F + G K + + ATA +++G E+ +PLD LKI QTNP + R R FL +++ EG LYRGA WT RN PGSFALFGGSA VKE +FHL Y AT Q AS GAV S+T+++P DV+K R+Q G + I+++++K EGP A FKGL K +VV PKL+ SFTV ++ D +L
Sbjct: 5 PPAASGRSESGTARFLGSASSGILELLIFHPVDTVAKRLMSNQTRIFGA-GHSMTESRAALSNVIFRDAANEAFLKKYASLFPGLGFAAGYKIAQRIYKFGGQPFVNDYLNKHHKDAFTAAFGEKSGKTMMHATAGSLVGIGEIALLPLDVLKIKRQTNPEAFRGRGFLTIIKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEHIFHLHDYNKATFFQNFCASIGGAVASITVAAPLDVVKTRIQNRNFENPESGFK-----IVKDLVKNEGPSAFFKGLTPKILVVGPKLIFSFTVAQHLIPVFDRML 310
BLAST of EWM24200.1 vs. NCBI_GenBank
Match: gi|671695313|emb|CDS10033.1| (hypothetical protein LRAMOSA02710 [Lichtheimia ramosa]) HSP 1 Score: 278.87 bits (712), Expect = 1.692e-89 Identity = 136/313 (43.45%), Postives = 189/313 (60.38%), Query Frame = 0
Query: 6 PEKEAGGSHHPLARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVLE 318
P G S ARF+GS+SS + EL+IF P+DT KR++++Q R+ G + + +VF++ + + K SL+ GL F A YK+ QR +G QPFV DY++ +H F SL G K + + ATA +++G E+ +PLD LKI QTNP + R R FL +++ EG LYRGA WT RN PGSFALFGGSA VKE +FHLD Y AT Q AS GAV S+T+++P DV+K R+Q G+ I+++++KKEG FKGL K +VV PKL+ SFTV Q++ + D L+
Sbjct: 3 PPIATGKSESGTARFLGSASSGVLELLIFHPVDTVAKRLMSNQTRVFGG-GKTFAESQAALNKIVFKDAANEAFLKKYASLFPGLGFAAGYKVAQRVYKFGGQPFVKDYLNTHHKSTFTSLFGEKTGKTIMHATAGSLVGIGEIALLPLDVLKIKRQTNPEAFRGRGFLTIIKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEYIFHLDNYNQATFFQNFCASIGGAVASITVAAPLDVVKTRIQNRNFDNPESGLN-----IIKDLIKKEGFGGFFKGLTPKILVVGPKLIFSFTVAQQLIPFFDKSLK 309
BLAST of EWM24200.1 vs. NCBI_GenBank
Match: gi|671686255|emb|CDS10819.1| (hypothetical protein LRAMOSA11305 [Lichtheimia ramosa]) HSP 1 Score: 273.478 bits (698), Expect = 2.049e-87 Identity = 134/312 (42.95%), Postives = 189/312 (60.58%), Query Frame = 0
Query: 6 PEKEAGGSHHPLARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVL 317
P +G S ARF+GS+SS + EL+IF P+DT KR++++Q R+ G S+ + +V+F++ + + K SL+ GL F A YKI QR +G QPFV DY++ +H + F + G K + + ATA +++G E+ +PLD LKI QTNP + R R FL +++ EG LYRGA WT RN PGSFALFGGSA VKE +F L Y AT Q AS GAV S+T+++P DV+K R+Q G + I+++++K EGP A FKGL K +VV PKL+ SFTV ++ D +L
Sbjct: 3 PPPASGRSESGTARFLGSASSGILELLIFHPVDTVAKRLMSNQTRIF-GTGHSMAESRAALSNVIFKDAANEAFLKKYASLFPGLGFAAGYKIAQRIYKFGGQPFVKDYLNKHHKDAFTAAFGEKSGKTMMHATAGSLVGIGEIALLPLDVLKIKRQTNPEAFRGRGFLTIIKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEHIFSLHDYNKATFFQNFCASIGGAVASITVAAPLDVVKTRIQNRNFENPESGFK-----IVKDLIKNEGPIAFFKGLTPKILVVGPKLIFSFTVAQHLIPVFDRML 308
BLAST of EWM24200.1 vs. NCBI_GenBank
Match: gi|585100899|gb|EWM20943.1| (mitochondrial carrier protein [Nannochloropsis gaditana]) HSP 1 Score: 273.478 bits (698), Expect = 4.937e-87 Identity = 130/297 (43.77%), Postives = 194/297 (65.32%), Query Frame = 0
Query: 18 ARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLD 314
AR +GS S+ +FEL +F P DT KR+++ +GR++ A G ++T + + VFR + + PI K SL+ G+ FGA YK+ QR +G QPFV D++ ++ E F + +G K + + +ATA ++MG E++ +PLD LKI +QTNP + + R ++ +EG+ LYRGA+WT RN PGSFALFGGSA +K+ VF L++Y DAT Q+ +AS GAV S++++ P DVIK R+Q+ +T G IL +++K EG A FKGL K +V+ PKLV SFT+ Q+MS+ +
Sbjct: 36 ARILGSGSAGVFELALFHPFDTAAKRLMSWEGRIIVA-GHTMT----NLNNAVFRNQAAAAPISKWLSLFPGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIYATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRGATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVASISVAQPLDVIKTRIQKRDFKD-----KTSGMSILSDLVKNEGFGAFFKGLTPKLIVIGPKLVFSFTIAQQLMSFFE 322
BLAST of EWM24200.1 vs. NCBI_GenBank
Match: gi|1183356330|gb|ORX83956.1| (mitochondrial carrier [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 268.47 bits (685), Expect = 3.018e-85 Identity = 134/305 (43.93%), Postives = 188/305 (61.64%), Query Frame = 0
Query: 17 LARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVLEARG 321
LARF GS +S L EL+ F P+DT KR++++ G++ G L+ + + +V+F++ ++G + K SL+ GL F A YKI QR +G QPFV DY++ +H + F G K + + ATA +++G EV +PLD LKI QTNP SL++R F +++ EG LYRG WT RN PGSFALFGG+A+VKE +FHL+ Y AT Q AS GAV S+T+++P DV+K R+Q G+ I++ M+KKEG A FKGL K +VV PKL+ SFTV Q++ EA G
Sbjct: 14 LARFSGSGASGLLELLGFHPIDTIAKRLMSNTGKVFI-PGAPLSQGFHNLSAVIFKDAQNAGALRKYMSLFPGLGFAAGYKILQRVYKFGGQPFVKDYLNTHHRDTFSRAFGEKNGKTMMHATAGSLVGIGEVALLPLDVLKIKMQTNPESLKNRGFFRILWDEGTGLYRGGMWTAARNAPGSFALFGGAAIVKEHMFHLEDYSKATFFQNFCASIGGAVASITVAAPLDVVKTRIQNKPFDAPESGV-----SIIKNMVKKEGFGAFFKGLTPKILVVGPKLIFSFTVAQQLIPVFHKFYEANG 312
BLAST of EWM24200.1 vs. NCBI_GenBank
Match: gi|1021059525|emb|SAM04477.1| (hypothetical protein [Absidia glauca]) HSP 1 Score: 267.7 bits (683), Expect = 6.526e-85 Identity = 133/317 (41.96%), Postives = 188/317 (59.31%), Query Frame = 0
Query: 6 PEKEAGGSHHPLARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVLEARGQ 322
P +G S ARF+GS SS + EL+IF P+DT KR++++Q +++ G + + +VVF++ + + K SL+ GL F A YK+ QR +G QPFV DY+ +H F S G K + + ATA +++G E+ +PLD LKI QTNP + R R FL +VR EG LYRGA WT RN PGSFALFGGSA VKE +F L+ Y AT Q +S GAV S+T+++P DV+K R+Q G+ I++ ++K+EG FKGL K +VV PKL+ SFTV Q++ D +++ Q
Sbjct: 3 PPIASGKSESGTARFLGSGSSGILELLIFHPVDTVAKRLMSNQTKVVL-PGNTFAQNKAAMNAVVFKDAANKAFLQKYASLFPGLGFAAGYKVAQRVYKFGGQPFVRDYLDKHHKAVFTSAFGEKTGKTMMHATAGSLVGIGEIALLPLDVLKIKRQTNPEAFRGRGFLTIVRDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEYMFSLENYNQATFFQNFCSSIGGAVASITVAAPLDVVKTRIQNRNFDNPESGMN-----IIKNLIKQEGFAGFFKGLTPKILVVGPKLIFSFTVAQQLIPVFDRMIKGESQ 313
BLAST of EWM24200.1 vs. NCBI_GenBank
Match: gi|384488200|gb|EIE80380.1| (hypothetical protein RO3G_05085 [Rhizopus delemar RA 99-880]) HSP 1 Score: 267.314 bits (682), Expect = 6.713e-85 Identity = 134/314 (42.68%), Postives = 188/314 (59.87%), Query Frame = 0
Query: 6 PEKEAGGSHHPLARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVLEA 319
P S ARF+GS+SS + EL+IF P+DT KR++++Q ++ + + + VVF+E +G + K SL+ GL F A YK+ QR +G QPFV DY + +H + FV G K + + ATA +V+G E+ +PLD LKI QTNP + R R FL++V+ EG LYRGA WT RN PGSFALFGGSA VKE +F L Y +AT Q AS GAV S+T+++P DV+K R+Q G++ I+++++K EG FKGL K +VV PKL+ SFTV Q++ +L+A
Sbjct: 3 PPISGNSSESGKARFLGSASSGILELIIFHPVDTVAKRLMSNQNKIWEST-RTFAENKAFVNQVVFKEAATAGFVKKYASLFPGLGFAAGYKVAQRVYKFGGQPFVKDYFNKHHRDLFVGAFGEKTGKTIMHATAGSVVGIGEIALLPLDVLKIKRQTNPEAFRGRGFLRIVKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEYLFGLSDYSNATFFQNFCASIGGAVASITVAAPLDVVKTRIQNRNFENPEPGLK-----IIKDLIKNEGFGGFFKGLTPKILVVGPKLIFSFTVAQQLIPVFHKMLDA 310
BLAST of EWM24200.1 vs. NCBI_GenBank
Match: gi|758358832|emb|CEP18870.1| (hypothetical protein [Parasitella parasitica]) HSP 1 Score: 267.314 bits (682), Expect = 8.513e-85 Identity = 133/315 (42.22%), Postives = 189/315 (60.00%), Query Frame = 0
Query: 6 PEKEAGGSHHPLARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVLEAR 320
P +G S ARF GS+SS + EL+IF P+DT KR++++Q +L + G + + VVF++ ++ + K SL+ GL F A YK+ QR +G QPFV DY++ +H + FV+ G K + + ATA +++G E+ +PLD LKI QTNP + R R FL +V+ EG LYRGA WT RN PGSFALFGGSA VKE +F L+ Y AT Q AS GAV S+T+++P DV+K R+Q G + I+++++K EG FKGL K +VV PKL+ SFTV Q++ + E +
Sbjct: 3 PPIASGQSESGKARFAGSASSGILELIIFHPVDTVAKRLMSNQNKLWVS-GRAFAENKAAVNQVVFKDAANATILKKYASLFPGLGFAAGYKVAQRVYKFGGQPFVRDYLNKHHRDLFVNTFGEKTGKTMMHATAGSLVGIGEIALLPLDVLKIKRQTNPEAFRGRGFLTIVKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEYLFSLNDYNKATFFQNFCASIGGAVASITVAAPLDVVKTRIQNRNFENPESGFK-----IVKDLVKNEGFAGFFKGLTPKILVVGPKLIFSFTVAQQLIPVFHKMFEGQ 311
BLAST of EWM24200.1 vs. NCBI_GenBank
Match: gi|384495802|gb|EIE86293.1| (hypothetical protein RO3G_11004 [Rhizopus delemar RA 99-880]) HSP 1 Score: 266.929 bits (681), Expect = 9.927e-85 Identity = 134/314 (42.68%), Postives = 188/314 (59.87%), Query Frame = 0
Query: 6 PEKEAGGSHHPLARFMGSSSSALFELVIFQPLDTCCKRIITHQGRLLTAEGLSLTAKYGKIRSVVFREKLHSGPIDKLRSLYAGLKFGAYYKICQRTAAYGLQPFVFDYIHAYHHEGFVSLIGSKRARALEFATAAAVMGTAEVIFIPLDTLKILSQTNPASLRSRSFLQLVRQEGFRLYRGASWTVLRNFPGSFALFGGSALVKEKVFHLDQYKDATLLQELLASCTGAVWSLTLSSPADVIKARVQRACLSPSHEGIQTKGREILREMLKKEGPWALFKGLNTKFMVVCPKLVLSFTVYNQVMSWLDAVLEA 319
P S ARF+GS+SS + EL+IF P+DT KR++++Q +L + + V+F+E ++G + K SL+ GL F A YK+ QR +G QPFV DY + +H + FV G K + + ATA +V+G E+ +PLD LKI QTNP + R R FL++V+ EG LYRGA WT RN PGSFALFGGSA VKE +F L Y +AT Q AS GAV S+T+++P DV+K R+Q G++ I+++++K EG FKGL K +VV PKL+ SFTV Q++ +L+A
Sbjct: 3 PPISGNNSESGKARFLGSASSGILELIIFHPVDTVAKRLMSNQTKLWEST-RPFAENKAAVDRVIFKEAANAGFLKKYASLFPGLGFAAGYKVAQRVYKFGGQPFVKDYFNKHHRDLFVGAFGEKTGKTIMHATAGSVVGIGEIALLPLDVLKIKRQTNPEAFRGRGFLRIVKDEGMGLYRGAGWTAARNAPGSFALFGGSAFVKEYLFGLSDYSNATFFQNFCASIGGAVASITVAAPLDVVKTRIQNRNFENPEPGLK-----IIKDLIKNEGFGGFFKGLTPKILVVGPKLIFSFTVAQQLIPVFHKMLDA 310 The following BLAST results are available for this feature:
BLAST of EWM24200.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|