EWM24239.1, cds6456 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|585105630|gb|EWM24239.1| (set1 ash2 histone methyltransferase complex subunit ash2 [Nannochloropsis gaditana]) HSP 1 Score: 893.649 bits (2308), Expect = 0.000e+0 Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0 Query: 1 MSKRSSAADTLSPSFLTSAALELVSPTDASPQGNVSGSHAPSKRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVAALKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS 437 MSKRSSAADTLSPSFLTSAALELVSPTDASPQGNVSGSHAPSKRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVAALKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS Sbjct: 1 MSKRSSAADTLSPSFLTSAALELVSPTDASPQGNVSGSHAPSKRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVAALKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS 437
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|553179509|ref|XP_005852711.1| (pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295821|gb|EKU23120.1| pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 197.208 bits (500), Expect = 1.394e-54 Identity = 128/150 (85.33%), Postives = 130/150 (86.67%), Query Frame = 0 Query: 291 DALGNHIRF---FKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVAALKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS 437 D +IR F G+D G I RYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVA LKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS Sbjct: 302 DVTTRNIRLQEAFSGGRDLG-----ISLPRYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVAVLKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS 446
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|673014484|ref|XP_008861203.1| (hypothetical protein H310_00272 [Aphanomyces invadans] >gi|574482801|gb|ETW09792.1| hypothetical protein H310_00272 [Aphanomyces invadans]) HSP 1 Score: 128.257 bits (321), Expect = 1.029e-30 Identity = 88/259 (33.98%), Postives = 123/259 (47.49%), Query Frame = 0 Query: 80 ESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSL 338 + P L L D + V+G + G+ MA+ + V G +Y+E ++L A H RVGW TK+G++ APVG+D+HS+GYRD+ G HK +R D YGE++G GD+VG +IC +N +A G P LP G +S +Q D A P +R DA ++IRFF NG+DQG A+ +P A Y+P VS+Y G VR NFGP Sbjct: 45 DKGPLLVLGDDGVTVSGTK-GFCMARTNVGVKKGTYYFEIKLLPAAEAY-------------------HVRVGWGTKKGDINAPVGFDEHSYGYRDIGGETTHKSKRSDRYGESFGVGDIVGTLIC------------VNWEAGEKKAEGATPSPLP---------------------GRFAPSSLSKQSS------DLVAVSSP--RRVDDA--SYIRFFVNGRDQGMAFEGMPFAEYFPCVSIYGPGTVRANFGPDF 240
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|223996563|ref|XP_002287955.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977071|gb|EED95398.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 132.88 bits (333), Expect = 1.333e-30 Identity = 99/320 (30.94%), Postives = 133/320 (41.56%), Query Frame = 0 Query: 69 EVPKHVTFSIKESAPQL--------------------FLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAA--------TGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYY-GEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGP--AYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYPPQ---TSIPFSPVAAL 354 +VP VT + +SAPQL L R L+ G R GYRM++ + G +Y+E IL+ T G+ + ++ H R+GW+T+ G+LQAPVGYDKHS+ RD GSK+H R D + GE + PGDV+G ICL GNSV TS + G+A + E NHIRF+KNG+ G AY I Y+PA+S YL G + NFGP +YPP+ PV+AL Sbjct: 118 DVPPFVTLAKLDSAPQLKIDNPSPVDVTIDDAQSSTKSLQRRLVVRGGMR-GYRMSRATHAATKGCYYYEAIILDPNDVKRGVKRPLDENNTDGNNTTSTVTKQRNGHLRIGWSTRLGDLQAPVGYDKHSYAVRDTMGSKVHNSRREDKWGGEDFDPGDVIGFAICL--------------AGNSV-------------------TSAADSITCDVTGGIAAAT-------------------------ETAPKTNHIRFYKNGELMGNCIAYDNITPEAYFPAISCYLEGSAQMNFGPHFVYPPKGLPDGTTLEPVSAL 378
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|698794824|ref|XP_009830441.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574115030|gb|ETV80517.1| hypothetical protein, variant 1 [Aphanomyces astaci]) HSP 1 Score: 127.487 bits (319), Expect = 2.545e-30 Identity = 91/303 (30.03%), Postives = 136/303 (44.88%), Query Frame = 0 Query: 39 HAPSKRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYP 341 + P+KR R A PP V + P L D + V+G + G+ MA+ + CV G +Y+E ++L + H RVGW TK+ ++ APVG+D+HS+GYRD+ G +HK +R YG+++G GD VG MIC+ +++ + ++V AP P F+P V S+ + S R+ DE++ +IRFF NGKDQG A+ +P A Y+P VS+Y G V NFGP +P Sbjct: 12 NTPTKRLRLDETKDDAVPGTPPKD------NVKCSTLVRWLDKGPLLLFGDDGVTVSGTK-GFCMARTNACVTRGTYYFELKLL-------------------GAIEAYHVRVGWGTKKADINAPVGFDEHSYGYRDIGGETMHKSKRSGPYGDSFGVGDTVGAMICV------NGDSSEDKSVDTV-APSLPGRFVPPSLVKQSSD-------------LLAHVSSPRRA-------DENS---------------YIRFFVNGKDQGIAFDNLPFAEYFPCVSIYGPGTVSANFGPDFDFP 246
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|299472326|emb|CBN77514.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 122.865 bits (307), Expect = 5.114e-28 Identity = 91/262 (34.73%), Postives = 126/262 (48.09%), Query Frame = 0 Query: 74 VTFSIKESAPQLFL-SRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPI-LPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQI-PGARYYPAVSLYLAGRVRG 332 ++ S ++ APQL + +D + VTG + G+RMA+ + V +G WYWEC +L E E C R+GW+ G LQ PVGYDK S+ YRD+AGSK+H R D YGE +GPGDV+G +I L PE + +T VG S+ S G+ +A+ G P E A D L N IRFFKNG+DQG AY+ + PG AV+++ ++ G Sbjct: 88 ISRSAEDCAPQLTMPHKDQLTVTGHK-GFRMARATKGVSNGTWYWECAVLP---------------PETTEGHC---RLGWSLPAGKLQGPVGYDKFSYAYRDIAGSKVHDSHRSDNYGEPWGPGDVIGFLIRLKSPTPEEIIDT-----------------------VGASSDSGRHGM----------TAAAAAAALAAGQSPSELAATAASDTAAGDPL-NEIRFFKNGRDQGVAYSAMKPGISRLGAVAVHPLLKLEG 296
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|698794822|ref|XP_009830440.1| (hypothetical protein H257_06781 [Aphanomyces astaci] >gi|574115029|gb|ETV80516.1| hypothetical protein H257_06781 [Aphanomyces astaci]) HSP 1 Score: 115.161 bits (287), Expect = 1.370e-25 Identity = 91/323 (28.17%), Postives = 136/323 (42.11%), Query Frame = 0 Query: 39 HAPSKRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPG--------------------ARYYPAVSLYLAGRVRGNFGPSLIYP 341 + P+KR R A PP V + P L D + V+G + G+ MA+ + CV G +Y+E ++L + H RVGW TK+ ++ APVG+D+HS+GYRD+ G +HK +R YG+++G GD VG MIC+ +++ + ++V AP P F+P V S + + S R+ DE++ +IRFF NGKDQG A+ +P A Y+P VS+Y G V NFGP +P Sbjct: 12 NTPTKRLRLDETKDDAVPGTPPKDN------VKCSTLVRWLDKGPLLLFGDDGVTVSGTK-GFCMARTNACVTRGTYYFELKLL-------------------GAIEAYHVRVGWGTKKADINAPVGFDEHSYGYRDIGGETMHKSKRSGPYGDSFGVGDTVGAMICV------NGDSSEDKSVDTV-APSLPGRFVPPSLVKQS-------------SDLLAHVSSPRRA-------DENS---------------YIRFFVNGKDQGIAFDNLPFGTTSLTPLEPVRHIYTCFAIAEYFPCVSIYGPGTVSANFGPDFDFP 266
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|545361627|ref|XP_005646107.1| (hypothetical protein COCSUDRAFT_48164 [Coccomyxa subellipsoidea C-169] >gi|384248078|gb|EIE21563.1| hypothetical protein COCSUDRAFT_48164 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 111.309 bits (277), Expect = 6.647e-24 Identity = 63/141 (44.68%), Postives = 78/141 (55.32%), Query Frame = 0 Query: 67 LIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLP 207 L E K V S E A Q LS D M VT C GYRMA+ + Y G WY+E + T +TG H R+GW+TK+G LQAPVGYD+HS YRD+ GSK+HK R D YG + GDV+GC + +P Sbjct: 53 LEEDGKPVQLSKLEKAQQAVLSEDGMSVT-CHKGYRMARATRGAYVGTWYFEIRV-----THLGSTG--------------HCRLGWSTKKGELQAPVGYDEHSMAYRDLEGSKVHKALRED-YGAPFAEGDVIGCFLHMP 172
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|1130852062|dbj|GAV67898.1| (SPRY domain-containing protein [Cephalotus follicularis]) HSP 1 Score: 111.694 bits (278), Expect = 2.025e-23 Identity = 99/304 (32.57%), Postives = 126/304 (41.45%), Query Frame = 0 Query: 51 TAAATASAPPGGKTLPLIEVPKH-----------VTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGR-----VRGNFGPSL 338 T T +A P T+ + VP+ + S A ++ LS D M G GYRM + + V G WY+E ++ ER E H R+GW+T++G+LQAPVGYD +SFGYRD+ GSK+HK R Y E Y GDV+G + LP GG AP P L +G R PD A EDP G+ I FFKNG QG A+ + G RYYPA S+Y VR NFGP Sbjct: 147 TKPNTQNATPNEDTVLITPVPRFPDKNDDTPESKICLSKVYKAEKVELSDDRM-TAGSSKGYRMVRATRGVVEGAWYFEIKV------------------ERLGETG-HTRLGWSTEKGDLQAPVGYDGYSFGYRDIDGSKLHKALREKYGEEGYKEGDVIGFYVNLP------------EGGK--YAPKAPHLVL-------------------------------YKGQRYVCAPD--AKEDPPKV----VHGSEISFFKNGVCQGVAFKDLFGGRYYPAASMYTLPNQPNCVVRFNFGPEF 379
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|971516683|dbj|GAQ81553.1| (hypothetical protein KFL_000830350 [Klebsormidium nitens]) HSP 1 Score: 110.923 bits (276), Expect = 4.394e-23 Identity = 60/140 (42.86%), Postives = 76/140 (54.29%), Query Frame = 0 Query: 68 IEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLP 207 +EV V S E APQ+ LS D + + + GYRM + + Y G WY+E +I+ T H R+GW+ G+LQAPVGYD HS+GYRDV GSK+H R + YG YG GDVVGC I LP Sbjct: 108 LEVLTEVLLSRTERAPQIQLSADQLTASSTK-GYRMVRATTGPYDGAWYFEIKIVHLGET-------------------GHTRLGWSMSGGDLQAPVGYDTHSYGYRDVDGSKVHNTWR-EEYGAGYGEGDVVGCYINLP 226 The following BLAST results are available for this feature:
BLAST of EWM24239.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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