EWM24239.1, cds6456 (CDS) Nannochloropsis gaditana

Overview
NameEWM24239.1
Unique Namecds6456
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:585917..585943 -
Alignment locationCM002468.1:584912..585830 -
Alignment locationCM002468.1:584336..584703 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24239.1
Productset1 ash2 histone methyltransferase complex subunit ash2
Orig transcript idgnl|cribi|Naga_100020g4.5372.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:585917..585943 -
CM002468.1supercontigCM002468.1:584912..585830 -
CM002468.1supercontigCM002468.1:584336..584703 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom
IPR001870B30.2/SPRY
IPR003877SPRY_dom
Homology
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|585105630|gb|EWM24239.1| (set1 ash2 histone methyltransferase complex subunit ash2 [Nannochloropsis gaditana])

HSP 1 Score: 893.649 bits (2308), Expect = 0.000e+0
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0
Query:    1 MSKRSSAADTLSPSFLTSAALELVSPTDASPQGNVSGSHAPSKRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVAALKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS 437
            MSKRSSAADTLSPSFLTSAALELVSPTDASPQGNVSGSHAPSKRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVAALKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS
Sbjct:    1 MSKRSSAADTLSPSFLTSAALELVSPTDASPQGNVSGSHAPSKRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVAALKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS 437          
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|553179509|ref|XP_005852711.1| (pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295821|gb|EKU23120.1| pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 197.208 bits (500), Expect = 1.394e-54
Identity = 128/150 (85.33%), Postives = 130/150 (86.67%), Query Frame = 0
Query:  291 DALGNHIRF---FKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVAALKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS 437
            D    +IR    F  G+D G     I   RYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVA LKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS
Sbjct:  302 DVTTRNIRLQEAFSGGRDLG-----ISLPRYYPAVSLYLAGRVRGNFGPSLIYPPQTSIPFSPVAVLKGGLKRDELALHNQAVNERRAALAARRQRQEATEQQEGGRLVGERHQQVVGVKEVREEAGNTDERGGEEREGGPAGRVAGHNS 446          
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|673014484|ref|XP_008861203.1| (hypothetical protein H310_00272 [Aphanomyces invadans] >gi|574482801|gb|ETW09792.1| hypothetical protein H310_00272 [Aphanomyces invadans])

HSP 1 Score: 128.257 bits (321), Expect = 1.029e-30
Identity = 88/259 (33.98%), Postives = 123/259 (47.49%), Query Frame = 0
Query:   80 ESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSL 338
            +  P L L  D + V+G + G+ MA+ +  V  G +Y+E ++L  A                      H RVGW TK+G++ APVG+D+HS+GYRD+ G   HK +R D YGE++G GD+VG +IC            +N      +A G  P  LP                     G    +S  +Q        D  A   P  +R  DA  ++IRFF NG+DQG A+  +P A Y+P VS+Y  G VR NFGP  
Sbjct:   45 DKGPLLVLGDDGVTVSGTK-GFCMARTNVGVKKGTYYFEIKLLPAAEAY-------------------HVRVGWGTKKGDINAPVGFDEHSYGYRDIGGETTHKSKRSDRYGESFGVGDIVGTLIC------------VNWEAGEKKAEGATPSPLP---------------------GRFAPSSLSKQSS------DLVAVSSP--RRVDDA--SYIRFFVNGRDQGMAFEGMPFAEYFPCVSIYGPGTVRANFGPDF 240          
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|223996563|ref|XP_002287955.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977071|gb|EED95398.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 132.88 bits (333), Expect = 1.333e-30
Identity = 99/320 (30.94%), Postives = 133/320 (41.56%), Query Frame = 0
Query:   69 EVPKHVTFSIKESAPQL--------------------FLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAA--------TGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYY-GEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGP--AYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYPPQ---TSIPFSPVAAL 354
            +VP  VT +  +SAPQL                     L R L+   G R GYRM++ +     G +Y+E  IL+                T G+  +    ++   H R+GW+T+ G+LQAPVGYDKHS+  RD  GSK+H   R D + GE + PGDV+G  ICL               GNSV                   TS    +      G+A +                          E     NHIRF+KNG+  G   AY  I    Y+PA+S YL G  + NFGP  +YPP+         PV+AL
Sbjct:  118 DVPPFVTLAKLDSAPQLKIDNPSPVDVTIDDAQSSTKSLQRRLVVRGGMR-GYRMSRATHAATKGCYYYEAIILDPNDVKRGVKRPLDENNTDGNNTTSTVTKQRNGHLRIGWSTRLGDLQAPVGYDKHSYAVRDTMGSKVHNSRREDKWGGEDFDPGDVIGFAICL--------------AGNSV-------------------TSAADSITCDVTGGIAAAT-------------------------ETAPKTNHIRFYKNGELMGNCIAYDNITPEAYFPAISCYLEGSAQMNFGPHFVYPPKGLPDGTTLEPVSAL 378          
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|698794824|ref|XP_009830441.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574115030|gb|ETV80517.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 127.487 bits (319), Expect = 2.545e-30
Identity = 91/303 (30.03%), Postives = 136/303 (44.88%), Query Frame = 0
Query:   39 HAPSKRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGRVRGNFGPSLIYP 341
            + P+KR R       A    PP         V         +  P L    D + V+G + G+ MA+ + CV  G +Y+E ++L                      +  H RVGW TK+ ++ APVG+D+HS+GYRD+ G  +HK +R   YG+++G GD VG MIC+        +++ +   ++V AP  P  F+P   V  S+              +    S  R+        DE++               +IRFF NGKDQG A+  +P A Y+P VS+Y  G V  NFGP   +P
Sbjct:   12 NTPTKRLRLDETKDDAVPGTPPKD------NVKCSTLVRWLDKGPLLLFGDDGVTVSGTK-GFCMARTNACVTRGTYYFELKLL-------------------GAIEAYHVRVGWGTKKADINAPVGFDEHSYGYRDIGGETMHKSKRSGPYGDSFGVGDTVGAMICV------NGDSSEDKSVDTV-APSLPGRFVPPSLVKQSSD-------------LLAHVSSPRRA-------DENS---------------YIRFFVNGKDQGIAFDNLPFAEYFPCVSIYGPGTVSANFGPDFDFP 246          
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|299472326|emb|CBN77514.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 122.865 bits (307), Expect = 5.114e-28
Identity = 91/262 (34.73%), Postives = 126/262 (48.09%), Query Frame = 0
Query:   74 VTFSIKESAPQLFL-SRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPI-LPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQI-PGARYYPAVSLYLAGRVRG 332
            ++ S ++ APQL +  +D + VTG + G+RMA+ +  V +G WYWEC +L                 E  E  C   R+GW+   G LQ PVGYDK S+ YRD+AGSK+H   R D YGE +GPGDV+G +I L    PE + +T                       VG S+ S   G+          +A+        G  P E A          D L N IRFFKNG+DQG AY+ + PG     AV+++   ++ G
Sbjct:   88 ISRSAEDCAPQLTMPHKDQLTVTGHK-GFRMARATKGVSNGTWYWECAVLP---------------PETTEGHC---RLGWSLPAGKLQGPVGYDKFSYAYRDIAGSKVHDSHRSDNYGEPWGPGDVIGFLIRLKSPTPEEIIDT-----------------------VGASSDSGRHGM----------TAAAAAAALAAGQSPSELAATAASDTAAGDPL-NEIRFFKNGRDQGVAYSAMKPGISRLGAVAVHPLLKLEG 296          
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|698794822|ref|XP_009830440.1| (hypothetical protein H257_06781 [Aphanomyces astaci] >gi|574115029|gb|ETV80516.1| hypothetical protein H257_06781 [Aphanomyces astaci])

HSP 1 Score: 115.161 bits (287), Expect = 1.370e-25
Identity = 91/323 (28.17%), Postives = 136/323 (42.11%), Query Frame = 0
Query:   39 HAPSKRTRSTVATAAATASAPPGGKTLPLIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPG--------------------ARYYPAVSLYLAGRVRGNFGPSLIYP 341
            + P+KR R       A    PP         V         +  P L    D + V+G + G+ MA+ + CV  G +Y+E ++L                      +  H RVGW TK+ ++ APVG+D+HS+GYRD+ G  +HK +R   YG+++G GD VG MIC+        +++ +   ++V AP  P  F+P   V  S             + +    S  R+        DE++               +IRFF NGKDQG A+  +P                     A Y+P VS+Y  G V  NFGP   +P
Sbjct:   12 NTPTKRLRLDETKDDAVPGTPPKDN------VKCSTLVRWLDKGPLLLFGDDGVTVSGTK-GFCMARTNACVTRGTYYFELKLL-------------------GAIEAYHVRVGWGTKKADINAPVGFDEHSYGYRDIGGETMHKSKRSGPYGDSFGVGDTVGAMICV------NGDSSEDKSVDTV-APSLPGRFVPPSLVKQS-------------SDLLAHVSSPRRA-------DENS---------------YIRFFVNGKDQGIAFDNLPFGTTSLTPLEPVRHIYTCFAIAEYFPCVSIYGPGTVSANFGPDFDFP 266          
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|545361627|ref|XP_005646107.1| (hypothetical protein COCSUDRAFT_48164 [Coccomyxa subellipsoidea C-169] >gi|384248078|gb|EIE21563.1| hypothetical protein COCSUDRAFT_48164 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 111.309 bits (277), Expect = 6.647e-24
Identity = 63/141 (44.68%), Postives = 78/141 (55.32%), Query Frame = 0
Query:   67 LIEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLP 207
            L E  K V  S  E A Q  LS D M VT C  GYRMA+ +   Y G WY+E  +     T   +TG              H R+GW+TK+G LQAPVGYD+HS  YRD+ GSK+HK  R D YG  +  GDV+GC + +P
Sbjct:   53 LEEDGKPVQLSKLEKAQQAVLSEDGMSVT-CHKGYRMARATRGAYVGTWYFEIRV-----THLGSTG--------------HCRLGWSTKKGELQAPVGYDEHSMAYRDLEGSKVHKALRED-YGAPFAEGDVIGCFLHMP 172          
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|1130852062|dbj|GAV67898.1| (SPRY domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 111.694 bits (278), Expect = 2.025e-23
Identity = 99/304 (32.57%), Postives = 126/304 (41.45%), Query Frame = 0
Query:   51 TAAATASAPPGGKTLPLIEVPKH-----------VTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLPILPEHMRETALNVGGNSVQAPGFPPPFLPREEVGVSTTSVVGGVGVIGVAGVAGSASYGRQGGRKGSGPDEDACEDPLLQRELDALGNHIRFFKNGKDQGPAYTQIPGARYYPAVSLYLAGR-----VRGNFGPSL 338
            T   T +A P   T+ +  VP+            +  S    A ++ LS D M   G   GYRM + +  V  G WY+E ++                  ER  E   H R+GW+T++G+LQAPVGYD +SFGYRD+ GSK+HK  R  Y  E Y  GDV+G  + LP             GG    AP  P   L                                +G R    PD  A EDP         G+ I FFKNG  QG A+  + G RYYPA S+Y         VR NFGP  
Sbjct:  147 TKPNTQNATPNEDTVLITPVPRFPDKNDDTPESKICLSKVYKAEKVELSDDRM-TAGSSKGYRMVRATRGVVEGAWYFEIKV------------------ERLGETG-HTRLGWSTEKGDLQAPVGYDGYSFGYRDIDGSKLHKALREKYGEEGYKEGDVIGFYVNLP------------EGGK--YAPKAPHLVL-------------------------------YKGQRYVCAPD--AKEDPPKV----VHGSEISFFKNGVCQGVAFKDLFGGRYYPAASMYTLPNQPNCVVRFNFGPEF 379          
BLAST of EWM24239.1 vs. NCBI_GenBank
Match: gi|971516683|dbj|GAQ81553.1| (hypothetical protein KFL_000830350 [Klebsormidium nitens])

HSP 1 Score: 110.923 bits (276), Expect = 4.394e-23
Identity = 60/140 (42.86%), Postives = 76/140 (54.29%), Query Frame = 0
Query:   68 IEVPKHVTFSIKESAPQLFLSRDLMEVTGCRAGYRMAKGSDCVYSGNWYWECEILEDARTVTAATGGDRQSEERAEEDCPHFRVGWATKQGNLQAPVGYDKHSFGYRDVAGSKIHKCERVDYYGEAYGPGDVVGCMICLP 207
            +EV   V  S  E APQ+ LS D +  +  + GYRM + +   Y G WY+E +I+    T                    H R+GW+   G+LQAPVGYD HS+GYRDV GSK+H   R + YG  YG GDVVGC I LP
Sbjct:  108 LEVLTEVLLSRTERAPQIQLSADQLTASSTK-GYRMVRATTGPYDGAWYFEIKIVHLGET-------------------GHTRLGWSMSGGDLQAPVGYDTHSYGYRDVDGSKVHNTWR-EEYGAGYGEGDVVGCYINLP 226          
The following BLAST results are available for this feature:
BLAST of EWM24239.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105630|gb|EWM24239.1|0.000e+0100.00set1 ash2 histone methyltransferase complex subuni... [more]
gi|553179509|ref|XP_005852711.1|1.394e-5485.33pentatricopeptide repeat-containing protein, parti... [more]
gi|673014484|ref|XP_008861203.1|1.029e-3033.98hypothetical protein H310_00272 [Aphanomyces invad... [more]
gi|223996563|ref|XP_002287955.1|1.333e-3030.94predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|698794824|ref|XP_009830441.1|2.545e-3030.03hypothetical protein, variant 1 [Aphanomyces astac... [more]
gi|299472326|emb|CBN77514.1|5.114e-2834.73conserved unknown protein [Ectocarpus siliculosus][more]
gi|698794822|ref|XP_009830440.1|1.370e-2528.17hypothetical protein H257_06781 [Aphanomyces astac... [more]
gi|545361627|ref|XP_005646107.1|6.647e-2444.68hypothetical protein COCSUDRAFT_48164 [Coccomyxa s... [more]
gi|1130852062|dbj|GAV67898.1|2.025e-2332.57SPRY domain-containing protein [Cephalotus follicu... [more]
gi|971516683|dbj|GAQ81553.1|4.394e-2342.86hypothetical protein KFL_000830350 [Klebsormidium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6472rna6472Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications