EWM24250.1, cds6439 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24250.1 vs. NCBI_GenBank
Match: gi|585105641|gb|EWM24250.1| (SUZ domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1001.89 bits (2589), Expect = 0.000e+0 Identity = 497/497 (100.00%), Postives = 497/497 (100.00%), Query Frame = 0 Query: 1 MADEEDWGPAPLPDFNRLRLGGRGAPATSANVTPSEAAGIAGKGLSSAGIVAVTTVERDAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGLHGAAEGEVGADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSSTTASTSSPSPTRPLDSKGKTANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPRGGAGEQEEKCNGGKMEWGESKVLWRNREAERYDPDFVRHRPPRGLGGGDPYGPGGRGAVYGVPPQPPYGAMPGMTIPSNPALAAYPPASYAQPHLQMQLEQHQWAAYHQHPQAHHQGAFLAAHHPPHAYYNDPRYASQSPHPYQQGGGGRGRGESRSILEGALSAAPLARIERGERCRPKTERR 497 MADEEDWGPAPLPDFNRLRLGGRGAPATSANVTPSEAAGIAGKGLSSAGIVAVTTVERDAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGLHGAAEGEVGADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSSTTASTSSPSPTRPLDSKGKTANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPRGGAGEQEEKCNGGKMEWGESKVLWRNREAERYDPDFVRHRPPRGLGGGDPYGPGGRGAVYGVPPQPPYGAMPGMTIPSNPALAAYPPASYAQPHLQMQLEQHQWAAYHQHPQAHHQGAFLAAHHPPHAYYNDPRYASQSPHPYQQGGGGRGRGESRSILEGALSAAPLARIERGERCRPKTERR Sbjct: 1 MADEEDWGPAPLPDFNRLRLGGRGAPATSANVTPSEAAGIAGKGLSSAGIVAVTTVERDAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGLHGAAEGEVGADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSSTTASTSSPSPTRPLDSKGKTANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPRGGAGEQEEKCNGGKMEWGESKVLWRNREAERYDPDFVRHRPPRGLGGGDPYGPGGRGAVYGVPPQPPYGAMPGMTIPSNPALAAYPPASYAQPHLQMQLEQHQWAAYHQHPQAHHQGAFLAAHHPPHAYYNDPRYASQSPHPYQQGGGGRGRGESRSILEGALSAAPLARIERGERCRPKTERR 497
BLAST of EWM24250.1 vs. NCBI_GenBank
Match: gi|1173957075|gb|OQS03692.1| (hypothetical protein THRCLA_21099 [Thraustotheca clavata]) HSP 1 Score: 144.05 bits (362), Expect = 6.324e-35 Identity = 110/319 (34.48%), Postives = 149/319 (46.71%), Query Frame = 0 Query: 45 LSSAGIVAVTTVERDAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGL-HGAAEGEV---GADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEK--TSSTVNGARS--VIDREKAYAEARARIFGSSSSTTASTSSPSPTRPLDSKGKTANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPRGGAGEQEEKCNGGKMEWGESKVLWRNREAERYDPDFVRHRPP 355 +S GI AV+ E +D +L A+DNPRER+ +L++ED +V+F+++G ++QQL P SSYHRL+++RLA R L H AE G D +R V FKTP+ +P +LLI N S E Q ++ P + A + R + S ++K T + N RS + DREKAYAEARARIFG+ + +T SP SN +T +A P A E+ +PR W ESKV WRNRE E DPDF RHR P Sbjct: 53 VSRGGIAAVSASE---PLDSVLVAALDNPRERLTLLQFEDQIVKFIRSG-REQQLVFPPLSSYHRLIIHRLAERCNLEHQTAEYNPYTGGYDGNSSRVVTLFKTPKCFVPSVLLI--------NLSAE---------------QSQQPPRHHTIAPKIMTRNRNSDKQKKHTKAINNDTRSRNLEDREKAYAEARARIFGTDNDST----SPQ--------------SNTTAENNDKTIKAVKPTA-----------------------VEKNERPRP-------------QNWKESKVTWRNREQEMNDPDFTRHRTP 290
BLAST of EWM24250.1 vs. NCBI_GenBank
Match: gi|953488453|emb|CEG47937.1| (mRNA-binding protein Encore [Plasmopara halstedii]) HSP 1 Score: 145.591 bits (366), Expect = 2.269e-34 Identity = 113/337 (33.53%), Postives = 161/337 (47.77%), Query Frame = 0 Query: 35 SEAAGIAGKGLSSAGIVAVTTVERDAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGLHGAAEGEVGADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSSTTAS--TSSPSPTRPL---DSKGK----TANPSNGAK----------LGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPRGGAGEQEEKCNGGKMEWGESKVLWRNREAERYDPDFVRH 352 ++ G + L+++ V T +DP+L ++N RER+ +L++ED +V+F++ K+ L P SSYHRL+++RLA R GL D R V FKTPQS++P +LLID ++ + S A AP R+M R+ S + G G+G+ +K + S+ DRE+AYAEARARIFG ++TA+ PSPT L DSK A P +G + G G+ + S G P A PG G S++ + P W ESKVLWRNRE E DPDF R+ Sbjct: 73 ADNGGNYAQQLNASAPVGTATASAHGPLDPVLVAGLENARERMTLLQFEDQIVRFLR-NPKEPHLNFPPLSSYHRLIVHRLAQRCGLEHQTADYNPYDNSSARVVTLFKTPQSAVPLVLLID------LSSDRQAPTSTPASAP--RIMMRKC-----SAPRPGVNGGRGNSADKATP------SLQDRERAYAEARARIFGEEDNSTAAEIVILPSPTISLVQDDSKNDDGLGNAGPRHGCRQAVGPDGSKGFGRGKETIYSSGNTTGSRPRSPKARPG----GNDSTVHSRSSIPSA----------PNAANWKESKVLWRNREQEMNDPDFTRN 375
BLAST of EWM24250.1 vs. NCBI_GenBank
Match: gi|635371716|emb|CCI40219.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 140.969 bits (354), Expect = 9.526e-33 Identity = 106/316 (33.54%), Postives = 156/316 (49.37%), Query Frame = 0 Query: 62 IDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHR-FGLHGAAEG-------------EVGADAGGNRSVKFFKTPQSSIPHLLLIDT-CGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSSTTASTSSPSPTRPLDSKGKT-----ANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPRGGAGEQEEKCNGGK-----MEWGESKVLWRNREAERYDPDFVRH 352 +DP L ++NPRER+ +L++ED +++F++ ++ Q P SSYHR++++RLA R F H ++ D+ G R V FKTP+++IP LLLID C ++ G+ P ++M R+R +S + G GS + K S R++ DREKAYAEARARIFG S + SS + +G+ AN +G K G + S A G + + P L++ A EE P GG G + + G+ W ES+VLWRNRE E DPDF R+ Sbjct: 104 VDPALILCLENPRERLRLLKFEDQIIRFIR-NPRETQTTFPPLSSYHRMIIHRLAQRCFLTHQTSDMTPPSQTASLNKIYNAAYDSNGLRVVTLFKTPKTAIPFLLLIDIPCDQQQNRGTS---------TPAPKIMIRKRGSLAESLRNGSYLSGDGSKDSKNS------RTIQDREKAYAEARARIFGDEHSLNVTESSSVSSIEDSVQGRNRNNLHANGPDGTKGFGGGRGKTESVRAKGKCSQTQNGIP-LVKRDA----HEEIPAPNGGRGHGKTFVSDGQDPNSAQNWKESRVLWRNREEELNDPDFTRN 398
BLAST of EWM24250.1 vs. NCBI_GenBank
Match: gi|1214709422|gb|OWZ20604.1| (hypothetical protein PHMEG_0004960 [Phytophthora megakarya]) HSP 1 Score: 137.887 bits (346), Expect = 1.252e-31 Identity = 111/308 (36.04%), Postives = 162/308 (52.60%), Query Frame = 0 Query: 62 IDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGLHGAAEGEVGADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSSTTASTSSPSPTRPL-------DSKGKTANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGA--RSSLEEEARKPR----GGAGEQEEKCNG----GKMEWGESKVLWRNREAERYDPDFVRH 352 +DP+L ++N RER+ +L++ED +V+F++ ++ L P SSYHRL+++RLA R GL + R V FKTPQS++P +LLID ++ + A AP R+M R+R S + GA G+G+G +KT+ S+ DRE+AYAEARARIFG + +TA+ S S + L + G + +NGA+LG + AG + G G G++ GA R S E+R P+ G + E+ + W ESKVLWRNRE E DPDF R+ Sbjct: 80 LDPVLVAGLENARERMTLLKFEDQIVRFLR-NPREPHLNFPPLSSYHRLIVHRLAQRCGLEHQTADYNPYENSSARVVTLFKTPQSAVPRVLLID------LSADRQPPTVTPASAP--RIMMRKR-----SAPRPGANGGRGNGADKTTP------SLQDRERAYAEARARIFGKDNGSTAAESVSSLSPSLTTSSAHESTAGVLSTSNNGARLGSRQA--AGLDGSRGFGR-----GCGVVASGANVRGSQARESRSPKERPSGNDSNEYERSSHPSAPNTASWKESKVLWRNREQEMNDPDFTRN 360
BLAST of EWM24250.1 vs. NCBI_GenBank
Match: gi|695381733|ref|XP_009517181.1| (hypothetical protein PHYSODRAFT_553002 [Phytophthora sojae] >gi|348690092|gb|EGZ29906.1| hypothetical protein PHYSODRAFT_553002 [Phytophthora sojae]) HSP 1 Score: 131.724 bits (330), Expect = 1.856e-29 Identity = 107/313 (34.19%), Postives = 150/313 (47.92%), Query Frame = 0 Query: 51 VAVTTVERDAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGLHGAAEGEVGADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSSTTASTSSPSPTRPLDSKGKTANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPRGGAGEQE-----------EKCNGGKMEWGESKVLWRNREAERYDPDFVRH 352 V T +DP+L ++N RER+ +L++ED +V+F+K ++ L P SSYHRL+++RLA R GL + R V FKTPQS++P +LLID + A AP R+M R+R S + GA G+G+G +K + S+ DRE+AYAEARARIFG + TA T S S P + G + N A+ G + +A P DG G S ++ P+ +GE + + W ESKVLWRNRE E DPDF R+ Sbjct: 85 VGTATASAHGPLDPVLVAGLENARERMTLLKFEDQIVRFLK-NPREPHLNFPPLSSYHRLIVHRLAQRCGLEHQTADYNPYENSSARVVTLFKTPQSAVPRVLLIDLSADR------QTPTVTPASAP--RIMMRKR-----SAPRPGANGGRGNGADKATP------SLQDRERAYAEARARIFGEDNDNTA-TESGSSISPAGNDGNGSTGINNARHG---SRQAAGP--DGSRGFGRGRGAASSGGNGSGSQSRDSHSPKDRSGEDDGANTNEYSRSSQPSAPNAANWKESKVLWRNREQEMNDPDFTRN 371
BLAST of EWM24250.1 vs. NCBI_GenBank
Match: gi|698817434|ref|XP_009841746.1| (hypothetical protein H257_15355 [Aphanomyces astaci] >gi|574103249|gb|ETV68792.1| hypothetical protein H257_15355 [Aphanomyces astaci]) HSP 1 Score: 129.798 bits (325), Expect = 2.019e-29 Identity = 98/308 (31.82%), Postives = 145/308 (47.08%), Query Frame = 0 Query: 54 TTVERDAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGL-HGAAE--GEVGADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSSTTASTSSPSPTRPLDSKGKTANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPR-GGAGEQEEKCNGGKMEWGESKVLWRNREAERYDPDFVRHRPPRG 357 T V + +DP+L A++N RER+ +L++ED +V F+K ++ +L L SSYHRL+++RLA R L H A+ G D R V FKTP+ ++P +LLID + + K +M R K+GA G KT + + RS+ DREKAYAEARARIFG ++ +S PT ++ + + S SPAA PS P + + ++P+ G + +W +SK +R+R+ E DPDF RH PRG Sbjct: 84 TAVSLLSPLDPVLVAALENSRERLTLLQFEDQIVTFLK-NPREHELVLPSLSSYHRLIVHRLAERCHLEHQTADYYHATGYDPNAVRVVTLFKTPRCAVPSILLIDLAADTAPPLPTHHTPAHPPK-----IMSR----------KKGA--GTAHKHHKTPAASSDPRSMQDREKAYAEARARIFGDEAAPDKGVASVPPT------------ASASSAAANQPSSTKSPAA-------PSTRP--------TPTSKHLQQPQHGATTHPHHHHAPHQQDWKQSKAQYRDRQKELNDPDFARHHQPRG 346
BLAST of EWM24250.1 vs. NCBI_GenBank
Match: gi|970657693|gb|KUF95547.1| (Transient receptor potential channel pyrexia [Phytophthora nicotianae]) HSP 1 Score: 128.257 bits (321), Expect = 2.025e-28 Identity = 105/318 (33.02%), Postives = 156/318 (49.06%), Query Frame = 0 Query: 45 LSSAGIVAVTTVERDAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGLHGAAEGEVGADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSST------TASTSSPSPTRPLDSKGKTANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPRGGAGEQEEKCNG----GKMEWGESKVLWRNREAERYDPDFVRH 352 +S+ V T +DP+L ++N RER+ +L++ED +V+F+K ++ L P SSYHRL+++RLA R GL + R V FKT QS++P +LLID ++ + A AP R+M R+R S + GA G+G+G +K + T+ DRE+AYAEARARIFG +S ++S+ S + + + G N N L G AG + G + ++ G++S EE P G + + + W ESKVLWRNRE E DPDF R+ Sbjct: 86 FNSSAPVGTATASAHGPLDPVLVAGLENARERMTLLKFEDQIVRFLK-NPREPHLNFPPLSSYHRLIVHRLAQRCGLEHQTADYNPYENSSARVVTLFKTAQSAVPRVLLID------LSADRQTPAVTPASAP--RIMMRKR-----SAPRPGANGGRGNGADKATPTLQ------DRERAYAEARARIFGEDNSNAVAESVSSSSPSSTASSAYEGSGSGVNTGNNV-LRHGSRQAAGPDGSRGFGRGRGTVSSSMIASGSQSRSPEEG--PSGNDSNEYARSSQPSAPNAANWKESKVLWRNREQELNDPDFTRN 380
BLAST of EWM24250.1 vs. NCBI_GenBank
Match: gi|570968952|gb|ETP32071.1| (hypothetical protein F442_19157 [Phytophthora parasitica P10297]) HSP 1 Score: 128.642 bits (322), Expect = 2.293e-28 Identity = 104/318 (32.70%), Postives = 154/318 (48.43%), Query Frame = 0 Query: 45 LSSAGIVAVTTVERDAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGLHGAAEGEVGADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSSTTAS------TSSPSPTRPLDSKGKTANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPRGGAGEQEEKCNG----GKMEWGESKVLWRNREAERYDPDFVRH 352 +S+ V T +DP+L ++N RER+ +L++ED +V+F+K ++ L P SSYHRL+++RLA R GL + R V FKT QS++P +LLID ++ + A AP R+M R+R S + GA G+G+G +K + T+ DRE+AYAEARARIFG +S + + S + + + G N N L G AG + G + ++ G++S EE P G + + + W ESKVLWRNRE E DPDF R+ Sbjct: 86 FNSSAPVGTATASAHGPLDPVLVAGLENARERMTLLKFEDQIVRFLK-NPREPHLNFPPLSSYHRLIVHRLAQRCGLEHQTADYNPYENSSARVVTLFKTAQSAVPRVLLID------LSADRQTPAVTPASAP--RIMMRKR-----SAPRPGANGGRGNGADKATPTLQ------DRERAYAEARARIFGEDNSNALAESVSSSSPSSTASSAYEGSGSGVNTGNNV-LRHGSRQAAGPDGSRGFGRGRGTVSSSMIASGSQSRSPEEG--PSGNDSNEYARSSQPSAPNAANWKESKVLWRNREQELNDPDFTRN 380
BLAST of EWM24250.1 vs. NCBI_GenBank
Match: gi|566011118|gb|ETI34029.1| (hypothetical protein F443_19386 [Phytophthora parasitica P1569] >gi|567948647|gb|ETK74390.1| hypothetical protein L915_18810 [Phytophthora parasitica] >gi|567977315|gb|ETL27820.1| hypothetical protein L916_18706 [Phytophthora parasitica] >gi|568036656|gb|ETM34260.1| hypothetical protein L914_18623 [Phytophthora parasitica] >gi|570938660|gb|ETP03917.1| hypothetical protein F441_19207 [Phytophthora parasitica CJ01A1] >gi|970633637|gb|KUF79209.1| R3H domain-containing protein 1 [Phytophthora nicotianae]) HSP 1 Score: 128.642 bits (322), Expect = 2.360e-28 Identity = 105/318 (33.02%), Postives = 156/318 (49.06%), Query Frame = 0 Query: 45 LSSAGIVAVTTVERDAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGLHGAAEGEVGADAGGNRSVKFFKTPQSSIPHLLLIDTCGKEGVNGSGEGSGSGSAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSSST------TASTSSPSPTRPLDSKGKTANPSNGAKLGLGRTSRAGSPAADGLSTPPPSAGPGLLEEGARSSLEEEARKPRGGAGEQEEKCNG----GKMEWGESKVLWRNREAERYDPDFVRH 352 +S+ V T +DP+L ++N RER+ +L++ED +V+F+K ++ L P SSYHRL+++RLA R GL + R V FKT QS++P +LLID ++ + A AP R+M R+R S + GA G+G+G +K + T+ DRE+AYAEARARIFG +S ++S+ S + + + G N N L G AG + G + ++ G++S EE P G + + + W ESKVLWRNRE E DPDF R+ Sbjct: 86 FNSSAPVGTATASAHGPLDPVLVAGLENARERMTLLKFEDQIVRFLK-NPREPHLNFPPLSSYHRLIVHRLAQRCGLEHQTADYNPYENSSARVVTLFKTAQSAVPRVLLID------LSADRQTPAVTPASAP--RIMMRKR-----SAPRPGANGGRGNGADKATPTLQ------DRERAYAEARARIFGEDNSNAVAESVSSSSPSSTASSAYEGSGSGVNTGNNV-LRHGSRQAAGPDGSRGFGRGRGTVSSSMIASGSQSRSPEEG--PSGNDSNEYARSSQPSAPNAANWKESKVLWRNREQELNDPDFTRN 380 The following BLAST results are available for this feature:
BLAST of EWM24250.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10 Position : 0 Zoom : x 1
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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