EWM24249.1, cds6428 (CDS) Nannochloropsis gaditana

Overview
NameEWM24249.1
Unique Namecds6428
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:523509..523590 -
Alignment locationCM002468.1:523376..523419 -
Alignment locationCM002468.1:523232..523297 -
Alignment locationCM002468.1:522713..522831 -
Alignment locationCM002468.1:522457..522553 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24249.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g35.5382.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:523509..523590 -
CM002468.1supercontigCM002468.1:523376..523419 -
CM002468.1supercontigCM002468.1:523232..523297 -
CM002468.1supercontigCM002468.1:522713..522831 -
CM002468.1supercontigCM002468.1:522457..522553 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR009332Med22
Homology
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BLAST of EWM24249.1 vs. NCBI_GenBank
Match: gi|585105640|gb|EWM24249.1| (hypothetical protein Naga_100020g35 [Nannochloropsis gaditana])

HSP 1 Score: 272.707 bits (696), Expect = 1.333e-92
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 
Query:    1 MSSSAVDAATARSDPRCEFRRLVDANILKCVESMGQLIKTAKMGSTREDAHMDANRVTILTGTILQSSEQLLTQIEQLKRLHVLQDFDTINTELDRDVISLEARIEALDAETEHWKAVVQSAANRKLASAVDGLA 135
            MSSSAVDAATARSDPRCEFRRLVDANILKCVESMGQLIKTAKMGSTREDAHMDANRVTILTGTILQSSEQLLTQIEQLKRLHVLQDFDTINTELDRDVISLEARIEALDAETEHWKAVVQSAANRKLASAVDGLA
Sbjct:    1 MSSSAVDAATARSDPRCEFRRLVDANILKCVESMGQLIKTAKMGSTREDAHMDANRVTILTGTILQSSEQLLTQIEQLKRLHVLQDFDTINTELDRDVISLEARIEALDAETEHWKAVVQSAANRKLASAVDGLA 135
The following BLAST results are available for this feature:
BLAST of EWM24249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105640|gb|EWM24249.1|1.333e-92100.00hypothetical protein Naga_100020g35 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6444rna6444Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications