EWM24260.1, cds6420 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24260.1 vs. NCBI_GenBank
Match: gi|585105651|gb|EWM24260.1| (hypothetical protein Naga_100020g42 [Nannochloropsis gaditana]) HSP 1 Score: 1330.08 bits (3441), Expect = 0.000e+0 Identity = 651/651 (100.00%), Postives = 651/651 (100.00%), Query Frame = 0
Query: 1 MWRRARDADGKNGVAVDRRTCNNISMRHEKHEPSAAEERAEEEVLLALRMMCQSGLRHPLHGHSYARYRALRPRVCFSCEAPVFGPFSVACHCLLCGIIVHRQCVMRITKVPCGNYRGLHDPSGLLSSIATPREYVHMASTETGPHETAVADEKKADKRESSVSQTHGRAEEPTEEKQARRERFQKDQSTARDGRSVIEDKEEGRAERIEIGDGPEPGVGRGTSSSVETGLVKVNAGARGITYDALVQVGKLMGNMIGGDANEVGARAAVASLLKISTPEGGSSGGKGASCQEEDGAGGQRYWGERWSKTLSGSVDMAVPPPPVAMAWSHLAQRWKRSVSCREPPMSLAAFLELGNEENTKERCQGPHGKGMVERKRVSCLIEQILRCPETPPGGLWAACLDQFVARHAATAPAGSDGFRGCNSSSVDASRSGREWEGADMPVAGVATGSCSQDAAAIIQEVSLTLMEYVPGLLGPSMEACEDAFVAVETEIMTTLYPSVLGECQEQARSRSSALEGWYLREPDAREERGMDGAGAQNEDPFHRAVQELVGMSQEVTGRKKVARVLQSCLALGEGRVVTSADDLLPALAGVVRSARIPALPAHLAFIDQTCDTGALLGAEGYALTSLQVVVSLIVTPPGEMSGTMSDDEFD 651
MWRRARDADGKNGVAVDRRTCNNISMRHEKHEPSAAEERAEEEVLLALRMMCQSGLRHPLHGHSYARYRALRPRVCFSCEAPVFGPFSVACHCLLCGIIVHRQCVMRITKVPCGNYRGLHDPSGLLSSIATPREYVHMASTETGPHETAVADEKKADKRESSVSQTHGRAEEPTEEKQARRERFQKDQSTARDGRSVIEDKEEGRAERIEIGDGPEPGVGRGTSSSVETGLVKVNAGARGITYDALVQVGKLMGNMIGGDANEVGARAAVASLLKISTPEGGSSGGKGASCQEEDGAGGQRYWGERWSKTLSGSVDMAVPPPPVAMAWSHLAQRWKRSVSCREPPMSLAAFLELGNEENTKERCQGPHGKGMVERKRVSCLIEQILRCPETPPGGLWAACLDQFVARHAATAPAGSDGFRGCNSSSVDASRSGREWEGADMPVAGVATGSCSQDAAAIIQEVSLTLMEYVPGLLGPSMEACEDAFVAVETEIMTTLYPSVLGECQEQARSRSSALEGWYLREPDAREERGMDGAGAQNEDPFHRAVQELVGMSQEVTGRKKVARVLQSCLALGEGRVVTSADDLLPALAGVVRSARIPALPAHLAFIDQTCDTGALLGAEGYALTSLQVVVSLIVTPPGEMSGTMSDDEFD
Sbjct: 1 MWRRARDADGKNGVAVDRRTCNNISMRHEKHEPSAAEERAEEEVLLALRMMCQSGLRHPLHGHSYARYRALRPRVCFSCEAPVFGPFSVACHCLLCGIIVHRQCVMRITKVPCGNYRGLHDPSGLLSSIATPREYVHMASTETGPHETAVADEKKADKRESSVSQTHGRAEEPTEEKQARRERFQKDQSTARDGRSVIEDKEEGRAERIEIGDGPEPGVGRGTSSSVETGLVKVNAGARGITYDALVQVGKLMGNMIGGDANEVGARAAVASLLKISTPEGGSSGGKGASCQEEDGAGGQRYWGERWSKTLSGSVDMAVPPPPVAMAWSHLAQRWKRSVSCREPPMSLAAFLELGNEENTKERCQGPHGKGMVERKRVSCLIEQILRCPETPPGGLWAACLDQFVARHAATAPAGSDGFRGCNSSSVDASRSGREWEGADMPVAGVATGSCSQDAAAIIQEVSLTLMEYVPGLLGPSMEACEDAFVAVETEIMTTLYPSVLGECQEQARSRSSALEGWYLREPDAREERGMDGAGAQNEDPFHRAVQELVGMSQEVTGRKKVARVLQSCLALGEGRVVTSADDLLPALAGVVRSARIPALPAHLAFIDQTCDTGALLGAEGYALTSLQVVVSLIVTPPGEMSGTMSDDEFD 651
BLAST of EWM24260.1 vs. NCBI_GenBank
Match: gi|224000313|ref|XP_002289829.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975037|gb|EED93366.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 65.855 bits (159), Expect = 1.790e-7 Identity = 73/268 (27.24%), Postives = 122/268 (45.52%), Query Frame = 0
Query: 375 RKRVSCLIEQILRCPETPPGGLWAACLDQFVARHAATAPAGSDGFRGCNSSSV-----DASRSGREWEGADMPVAGVATGSCSQDAAAIIQEVSLTLMEYVPGLLGPSMEACEDAFVAVETEIMTTLYPSVLGECQEQARSRSSALEGWY--LREPDAREERGMDGAGAQNEDPFHRAVQELVGMSQEVTGRKKVARV------LQSCLALGEGRVVTSADDLLPALAGVVRSARIPALPAHLAFI-DQTCDTGALLGAEGYALTSLQ 628
R+++ L+ +IL + PG ++ + +H + +G + G S + ++S RE + + SC QDA +I+ V+ TL+E PG L S+ E + +AVET + + LY V E Q + AL+ LR R +R DG+ ++ H A+ L + T K+ + + + + + R + AD LL + + +A+IP+L A + FI D D L G EGYAL +LQ
Sbjct: 513 REKIMLLVNRILNDKMSLPGYVYR----YLIRKHKERSVSGQE--EGSEHSPLLLIGGTETKSMREENRSSL--------SCRQDAHGVIKHVTATLLEVRPG-LASSLAMTEMSAMAVETLVFSELYEDVFDEIIRQTLDQDEALQSKIDTLRHCSMRSQR--DGS-EKHPTSSHEAIAALKFLPSAHTPADKLFFLVIFLEHISAHFSALDNRFI-DADLLLNMVCQHLVAAQIPSLHAEIEFIADFARDEQLLRGKEGYALITLQ 761 The following BLAST results are available for this feature:
BLAST of EWM24260.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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