EWM30032.1, cds641 (CDS) Nannochloropsis gaditana

Overview
NameEWM30032.1
Unique Namecds641
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:67770..68573 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30032.1
Productcation-transporting p-type atpase
Orig transcript idgnl|cribi|Naga_100718g4.10596.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:67770..68573 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005388calcium-transporting ATPase activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006816calcium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006413P-type_ATPase_IIA_PMR1
IPR006068ATPase_P-typ_cation-transptr_C
IPR023298ATPase_P-typ_TM_dom
Homology
BLAST of EWM30032.1 vs. NCBI_GenBank
Match: gi|585112659|gb|EWM30032.1| (cation-transporting p-type atpase [Nannochloropsis gaditana])

HSP 1 Score: 521.161 bits (1341), Expect = 0.000e+0
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
Query:    1 MHRRKPQAASSGWQSISLGTHRLYPLFPPPFLASCLPPPPPPALPRSVDLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLLIFLLAPFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHGLSPFFDRELLHAIAGGGISLLAIVLLAGWGGRGGRGGTTSRRTRSIGSHCISTAGSSGMYSLPGNSAPSISPSSLKAWPPILPSWSGQGRCSVSSSSSSSSPPSPRPWESYLYPQGSGAVCSSSP 267
            MHRRKPQAASSGWQSISLGTHRLYPLFPPPFLASCLPPPPPPALPRSVDLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLLIFLLAPFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHGLSPFFDRELLHAIAGGGISLLAIVLLAGWGGRGGRGGTTSRRTRSIGSHCISTAGSSGMYSLPGNSAPSISPSSLKAWPPILPSWSGQGRCSVSSSSSSSSPPSPRPWESYLYPQGSGAVCSSSP
Sbjct:    1 MHRRKPQAASSGWQSISLGTHRLYPLFPPPFLASCLPPPPPPALPRSVDLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLLIFLLAPFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHGLSPFFDRELLHAIAGGGISLLAIVLLAGWGGRGGRGGTTSRRTRSIGSHCISTAGSSGMYSLPGNSAPSISPSSLKAWPPILPSWSGQGRCSVSSSSSSSSPPSPRPWESYLYPQGSGAVCSSSP 267          
BLAST of EWM30032.1 vs. NCBI_GenBank
Match: gi|553179125|ref|XP_005852652.1| (p-type had subfamily ic [Nannochloropsis gaditana CCMP526] >gi|422295880|gb|EKU23179.1| p-type had subfamily ic [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 335.495 bits (859), Expect = 2.809e-114
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 0
Query:    1 MHRRKPQAASSGWQSISLGTHRLYPLFPPPFLASCLPPPPPPALPRSVDLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLLIFLLAPFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHGLSPFFDRELLHAIAGGGISLLAIVLLAGWG 172
            MHRRKPQAASSGWQSISLGTHRLYPLFPPPFLASCLPPPPPPALPRSVDLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLL+FLLAPFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHGLSPFFDRELLHAIAGGGISLLAIVLLAGWG
Sbjct:    1 MHRRKPQAASSGWQSISLGTHRLYPLFPPPFLASCLPPPPPPALPRSVDLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLLLFLLAPFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHGLSPFFDRELLHAIAGGGISLLAIVLLAGWG 172          
BLAST of EWM30032.1 vs. NCBI_GenBank
Match: gi|168045566|ref|XP_001775248.1| (predicted protein [Physcomitrella patens] >gi|162673461|gb|EDQ59984.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 119.398 bits (298), Expect = 7.436e-27
Identity = 62/129 (48.06%), Postives = 88/129 (68.22%), Query Frame = 0
Query:   43 ALPRSVDLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLLIFLLAP-FPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPP-HGLSPFFDRELLHAIAGGGISLLAIVLLA 169
            A+ +  D+A+ AA IV   ++F  +   L EGRRL AN RKALAFYLGAK  L+++F++   FPLS +QII+LELFMD+GAS +F +EPAD D+M RPP      FF+RE++  I    + ++  VL++
Sbjct:  566 AMGKGTDVAREAASIVFVDDNFAMVPFALAEGRRLLANLRKALAFYLGAKIGLIMLFIIGTFFPLSAIQIIVLELFMDLGASTSFVMEPADTDIMRRPPLDSTKRFFNREIVGGILVSALCMIFTVLVS 694          
BLAST of EWM30032.1 vs. NCBI_GenBank
Match: gi|290973595|ref|XP_002669533.1| (predicted protein [Naegleria gruberi] >gi|284083082|gb|EFC36789.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 116.701 bits (291), Expect = 7.810e-26
Identity = 62/135 (45.93%), Postives = 81/135 (60.00%), Query Frame = 0
Query:   43 ALPRSVDLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLLIFLL---------APF-PLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHGLSPFFDRELLHAIAGGGISLLAIVL 167
            A+   VDLAK AA I++  ++F  +V  +REGRRL+AN RK+L FYL  K  L+++F+           PF PL PMQIILLELF D+GA+ TF LE  +  LM  PP     F D+  ++ I  G ISL A V 
Sbjct:  602 AMRSGVDLAKEAAEIIIMDDNFATIVAGIREGRRLYANLRKSLQFYLSCKVTLVVLFVTNMIVGGSSAIPFIPLEPMQIILLELFSDIGAATTFVLEEEEETLMKNPPRTEKNFVDKSFIYHIIIGSISLFATVF 736          
BLAST of EWM30032.1 vs. NCBI_GenBank
Match: gi|1028080832|ref|WP_063840215.1| (hypothetical protein [Alicycliphilus sp. B1])

HSP 1 Score: 115.931 bits (289), Expect = 1.228e-25
Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = 0
Query:   49 DLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLL-----IFLLAPFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPH-GLSPFFDRELLHAIAGGGISLLAIVLL 168
            D+A+ AA +V+A ++F  +VE +R GR L+AN RKA+ +YL AK AL+      + L  P P  P+QIIL+ELFMD+GASVTF  EP + D+M R P     PF DR ++  I  GG+SL A VL+
Sbjct:  653 DVAREAADLVLADDNFATVVEAVRTGRVLYANLRKAVRYYLAAKVALVFASLAAVLLKLPVPFDPVQIILMELFMDLGASVTFVAEPPENDVMARRPRDARQPFMDRSMVGGILFGGLSLGAAVLI 778          
BLAST of EWM30032.1 vs. NCBI_GenBank
Match: gi|781563751|dbj|GAO22081.1| (ATPase [Alicycliphilus sp. B1])

HSP 1 Score: 115.931 bits (289), Expect = 1.407e-25
Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = 0
Query:   49 DLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLL-----IFLLAPFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPH-GLSPFFDRELLHAIAGGGISLLAIVLL 168
            D+A+ AA +V+A ++F  +VE +R GR L+AN RKA+ +YL AK AL+      + L  P P  P+QIIL+ELFMD+GASVTF  EP + D+M R P     PF DR ++  I  GG+SL A VL+
Sbjct:  630 DVAREAADLVLADDNFATVVEAVRTGRVLYANLRKAVRYYLAAKVALVFASLAAVLLKLPVPFDPVQIILMELFMDLGASVTFVAEPPENDVMARRPRDARQPFMDRSMVGGILFGGLSLGAAVLI 755          
BLAST of EWM30032.1 vs. NCBI_GenBank
Match: gi|1175322479|ref|WP_081870272.1| (hypothetical protein [Lachnoclostridium phytofermentans])

HSP 1 Score: 108.612 bits (270), Expect = 3.990e-23
Identity = 53/125 (42.40%), Postives = 80/125 (64.00%), Query Frame = 0
Query:   49 DLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLLIFLLA-----PFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHG-LSPFFDRELLHAIAGGGISLLAIVL 167
            D+AK AA +++  + FT++V+ ++EGRRL+ N  K + +YL  K  L++ FL+      P P SP+QII+LELFMD+ AS +F  EPA+ DL+ R P      F ++ ++  I  GGI+L A VL
Sbjct:  599 DVAKEAADMILTNDSFTSIVDAIQEGRRLYDNLSKCVKYYLSCKVGLIISFLVPVLFNMPLPFSPIQIIILELFMDLAASTSFVAEPAESDLLKRKPRDPKESFMNKNMMTGIFSGGITLSAAVL 723          
BLAST of EWM30032.1 vs. NCBI_GenBank
Match: gi|1174951919|ref|WP_081625138.1| (hypothetical protein [Hyphomicrobium denitrificans])

HSP 1 Score: 108.227 bits (269), Expect = 5.501e-23
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 0
Query:   49 DLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKA-----ALLLIFLLAPFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHG-LSPFFDRELLHAIAGGGISLLAIVLLAGWGG 173
            D+A+ AA +V+  + F  LVE +REGRRL+ NFRKA+ +YL  K      +     L  P P +P+QI++LELFMD+GAS+ F  +PA+ D+M RPP    + FFD  ++  +  GG++L AIV  + W G
Sbjct:  633 DVARQAAQVVLTDDSFATLVEAVREGRRLYDNFRKAIRYYLAVKVALVLASAAAAILGLPLPFTPVQIVVLELFMDLGASLAFVGQPAEPDVMCRPPRDPDARFFDHGMVLGLLAGGVTLAAIVFASFWIG 763          
BLAST of EWM30032.1 vs. NCBI_GenBank
Match: gi|484583705|gb|AGK59738.1| (cation-transporting ATPase [Hyphomicrobium denitrificans 1NES1])

HSP 1 Score: 108.227 bits (269), Expect = 5.713e-23
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 0
Query:   49 DLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKA-----ALLLIFLLAPFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHG-LSPFFDRELLHAIAGGGISLLAIVLLAGWGG 173
            D+A+ AA +V+  + F  LVE +REGRRL+ NFRKA+ +YL  K      +     L  P P +P+QI++LELFMD+GAS+ F  +PA+ D+M RPP    + FFD  ++  +  GG++L AIV  + W G
Sbjct:  632 DVARQAAQVVLTDDSFATLVEAVREGRRLYDNFRKAIRYYLAVKVALVLASAAAAILGLPLPFTPVQIVVLELFMDLGASLAFVGQPAEPDVMCRPPRDPDARFFDHGMVLGLLAGGVTLAAIVFASFWIG 762          
BLAST of EWM30032.1 vs. NCBI_GenBank
Match: gi|1101132012|gb|OIO88795.1| (hypothetical protein AUK32_00595 [Actinobacteria bacterium CG2_30_50_142])

HSP 1 Score: 100.908 bits (250), Expect = 5.197e-22
Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 0
Query:   49 DLAKAAAGIVVAPEDFTALVETLREGRRLHANFRKALAFYLGAKAALLLIFLL-----APFPLSPMQIILLELFMDVGASVTFTLEPADGDLMLRPPHG-LSPFFDRELLHAIAGGGISLLAIV 166
            D+A+ AA +++  +DF+ +   ++ GRR++ N RK + +YL  K  L+ IFLL      P P +P+QII+LELFMD+GAS  F  EP + DLM +PP      F DR +L  I  G ISL   V
Sbjct:    7 DVAREAADMILTNDDFSTIAFAVQSGRRMYDNLRKGVRYYLAVKLGLMSIFLLPVLLGIPLPFAPIQIIVLELFMDLGASAAFVAEPGEKDLMTQPPRNPNQRFMDRPMLRTIVLGAISLFLAV 130          
The following BLAST results are available for this feature:
BLAST of EWM30032.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112659|gb|EWM30032.1|0.000e+0100.00cation-transporting p-type atpase [Nannochloropsis... [more]
gi|553179125|ref|XP_005852652.1|2.809e-11499.42p-type had subfamily ic [Nannochloropsis gaditana ... [more]
gi|168045566|ref|XP_001775248.1|7.436e-2748.06predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|290973595|ref|XP_002669533.1|7.810e-2645.93predicted protein [Naegleria gruberi] >gi|28408308... [more]
gi|1028080832|ref|WP_063840215.1|1.228e-2548.41hypothetical protein [Alicycliphilus sp. B1][more]
gi|781563751|dbj|GAO22081.1|1.407e-2548.41ATPase [Alicycliphilus sp. B1][more]
gi|1175322479|ref|WP_081870272.1|3.990e-2342.40hypothetical protein [Lachnoclostridium phytoferme... [more]
gi|1174951919|ref|WP_081625138.1|5.501e-2343.51hypothetical protein [Hyphomicrobium denitrificans... [more]
gi|484583705|gb|AGK59738.1|5.713e-2343.51cation-transporting ATPase [Hyphomicrobium denitri... [more]
gi|1101132012|gb|OIO88795.1|5.197e-2242.74hypothetical protein AUK32_00595 [Actinobacteria b... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna641rna641Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications