EWM24316.1, cds6359 (CDS) Nannochloropsis gaditana

Overview
NameEWM24316.1
Unique Namecds6359
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:375639..375923 +
Alignment locationCM002468.1:376015..376311 +
Alignment locationCM002468.1:376387..376461 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24316.1
Productferredoxin (2fe-2s)
Orig transcript idgnl|cribi|Naga_100047g16.6079.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:375639..375923 +
CM002468.1supercontigCM002468.1:376015..376311 +
CM002468.1supercontigCM002468.1:376387..376461 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR012675Beta-grasp_dom
IPR0010412Fe-2S_ferredoxin-type
Homology
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|585105708|gb|EWM24316.1| (ferredoxin (2fe-2s) [Nannochloropsis gaditana])

HSP 1 Score: 457.218 bits (1175), Expect = 6.082e-163
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
Query:    1 MREGFLLLVLLLLSSTSQAFLQPAIQHEQNSKSHRSLFQQGRFHSPAALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEVGKRPNTILLAVTVRLNYFKMLF 218
            MREGFLLLVLLLLSSTSQAFLQPAIQHEQNSKSHRSLFQQGRFHSPAALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEVGKRPNTILLAVTVRLNYFKMLF
Sbjct:    1 MREGFLLLVLLLLSSTSQAFLQPAIQHEQNSKSHRSLFQQGRFHSPAALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEVGKRPNTILLAVTVRLNYFKMLF 218          
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|298715104|emb|CBJ27792.1| (ferredoxin [Ectocarpus siliculosus])

HSP 1 Score: 176.792 bits (447), Expect = 4.634e-52
Identity = 94/188 (50.00%), Postives = 124/188 (65.96%), Query Frame = 0
Query:    8 LVLLLLSSTSQAFL-QPAIQHEQNSKSHRSLFQQGRFHSPAALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194
            LV L ++  S+AFL  PA+         R     G   + AA   SP     +   ++ SPN+W  +   + PG GGIWPG PDA+ + VT V+   +   + DVP DRYI+FA ED+GVD+P++N KRMCRNGCCTTCAVK+ EGKVK E ALGLL+D+K +GYAL+CCS P+SD+V  LQ+ED+VY
Sbjct:   35 LVWLSMTVQSRAFLVAPAV----GGGVCRPRAGAGSARTSAA---SP----LMAYDVKYSPNKW-WDEDDIVPGFGGIWPGDPDAETHHVTYVNKAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVY 210          
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|873237306|emb|CEL97897.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 167.162 bits (422), Expect = 1.064e-47
Identity = 76/130 (58.46%), Postives = 101/130 (77.69%), Query Frame = 0
Query:   66 SPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYE 195
            +P +W+  G  ++P  GG WPG P+AK YKVT++DP +   +T DVPEDRYIFF+FE+S    P+ N K+MCRNGCCTTCAV+++EG+VKM+  +GL R+M+  GYAL+C S PRSD+V ELQDEDEVY+
Sbjct:  133 TPMKWEM-GDRIKPYKGGPWPGDPNAKTYKVTIIDPVSGERHTQDVPEDRYIFFSFEESRNLPPIKNIKKMCRNGCCTTCAVRVREGEVKMDPQIGLTREMERAGYALTCVSYPRSDVVLELQDEDEVYK 261          
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|545704688|ref|XP_005704666.1| (ferredoxin [Galdieria sulphuraria] >gi|452821112|gb|EME28146.1| ferredoxin [Galdieria sulphuraria])

HSP 1 Score: 119.398 bits (298), Expect = 2.972e-30
Identity = 71/172 (41.28%), Postives = 96/172 (55.81%), Query Frame = 0
Query:   35 RSLFQQGR------FHSPAALHASPP------KRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194
            R+ F   R      FH    L+ S        +RLT   Q  LS   W  +G+           G P+A+KY+VTV + RT   Y  DVP DRYI+++F + G++LP       C NGCCTTCA ++  G+++   ALGLL++MKNK YAL C S P+SD+   LQ+EDEVY
Sbjct:    8 RTTFHSNRNRKLTSFHHCCPLYGSSRYYTRILRRLTRNCQQYLS---WTCHGETF---------GDPNARKYRVTVRNQRTGECYIRDVPTDRYIWWSFLEQGIELPS-----SCVNGCCTTCACRVVSGRIEQPLALGLLKEMKNKRYALLCVSYPKSDVEVVLQEEDEVY 162          
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|1189382649|gb|OSX70086.1| (hypothetical protein BU14_0924s0003 [Porphyra umbilicalis])

HSP 1 Score: 119.398 bits (298), Expect = 9.437e-30
Identity = 62/113 (54.87%), Postives = 73/113 (64.60%), Query Frame = 0
Query:   83 GIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFED-SGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194
            G  PG PDA  + VTV+D       T+ VPEDRYI+ A E+ SG  LP       CR+GCCTTCAV++  G+V    ALGLLR M+  GYAL C S PRSDI C LQ+EDEVY
Sbjct:   54 GSLPGSPDAPTHTVTVLDGAGAVVQTLAVPEDRYIWHAMEEASGGRLP-----SSCRHGCCTTCAVRVTSGEVDQREALGLLRQMREVGYALLCVSKPRSDITCVLQEEDEVY 161          
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|546324976|ref|XP_005718525.1| (unnamed protein product [Chondrus crispus] >gi|507115127|emb|CDF38620.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 119.398 bits (298), Expect = 1.221e-29
Identity = 57/112 (50.89%), Postives = 71/112 (63.39%), Query Frame = 0
Query:   83 GIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194
            G  PG P+AK + VTV DP+        VPEDRY++    D   D+P       C NGCCTTCAVK+  G+V    ALGLL++M+++ YAL C S P+SDI C LQDEDEVY
Sbjct:  113 GSLPGNPNAKTHTVTVHDPKNDRVLKYQVPEDRYVWHGMSDQDADIP-----SSCLNGCCTTCAVKITSGEVDQSEALGLLKEMRDQDYALLCVSYPKSDIECVLQDEDEVY 219          
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|544213087|ref|XP_005536691.1| (similar to ferredoxin [Cyanidioschyzon merolae strain 10D] >gi|544216779|ref|XP_005538534.1| probable ferredoxin [Cyanidioschyzon merolae strain 10D] >gi|449017253|dbj|BAM80655.1| similar to ferredoxin [Cyanidioschyzon merolae strain 10D] >gi|449019096|dbj|BAM82498.1| probable ferredoxin [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 115.161 bits (287), Expect = 1.468e-28
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 0
Query:   82 GGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYE 195
            GG  PG P A K+ VT+++ R   + T+ VPEDRYI++ F ++G +LP       C NGCCTTCA K+  G ++   ALGL R+ ++KGY L C S PRS +V  LQ EDEVYE
Sbjct:   61 GGALPGDPAAPKHNVTILNYRDDESLTLAVPEDRYIWWYFRENGYELPS-----SCLNGCCTTCAAKIVRGSLEQPEALGLTREFRDKGYCLLCVSYPRSALVLVLQSEDEVYE 169          
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|1121298279|ref|WP_073610103.1| (ferredoxin [Phormidium tenue] >gi|1115282529|gb|OKH45698.1| ferredoxin [Phormidium tenue NIES-30])

HSP 1 Score: 112.464 bits (280), Expect = 2.738e-28
Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = 0
Query:   91 AKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEV 196
            A+ + +TV   +T   YT++VPEDRYI  A E  GV+LP       CRNG CTTCAV++ EG+V+   A+GL  D++++GYAL C S PRS+I  E QDEDEVYE+
Sbjct:    2 ARTHTITVHHRQTGRIYTVEVPEDRYILQAAESQGVELPFA-----CRNGACTTCAVRLLEGEVEQPEAMGLSPDLRDRGYALLCVSYPRSNIQAETQDEDEVYEL 102          
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|1210114590|dbj|BAY33718.1| (2Fe-2S ferredoxin [Nostoc carneum NIES-2107] >gi|1210182413|dbj|BAZ01474.1| 2Fe-2S ferredoxin [Tolypothrix tenuis PCC 7101] >gi|1210255601|dbj|BAZ74603.1| 2Fe-2S ferredoxin [Aulosira laxa NIES-50])

HSP 1 Score: 108.612 bits (270), Expect = 8.013e-27
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 0
Query:   91 AKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEV 196
            ++ YK+ V D  T   YT+ VPEDRYI  + E  G +LP       CRNG CTTCAV++  G++    A+GL  +++ KGYAL C S PRSDI  E QDEDEVYE+
Sbjct:    2 SQTYKIRVRDRNTGKEYTLQVPEDRYILHSAEQQGTELPF-----SCRNGACTTCAVRVLSGEIYQPEAIGLSPELRRKGYALLCVSYPRSDIEVETQDEDEVYEL 102          
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|797206978|ref|WP_045867930.1| (ferredoxin [Tolypothrix sp. PCC 7601] >gi|407273281|gb|EKF04715.1| ferredoxin [Tolypothrix sp. PCC 7601] >gi|1210173005|dbj|BAY92080.1| 2Fe-2S ferredoxin [Fremyella diplosiphon NIES-3275])

HSP 1 Score: 108.612 bits (270), Expect = 9.420e-27
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 0
Query:   91 AKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEV 196
            ++ YK+ V D  T   YT+ VPEDRYI  + E  G +LP       CRNG CTTCAV++  G++    A+GL  +++ KGYAL C S PRSDI  E QDEDEVYE+
Sbjct:    2 SQTYKIRVRDRNTGKEYTIQVPEDRYILHSAEQQGTELPF-----SCRNGACTTCAVRVLSGEIYQPEAIGLSPELRRKGYALLCVSYPRSDIEVETQDEDEVYEL 102          
The following BLAST results are available for this feature:
BLAST of EWM24316.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105708|gb|EWM24316.1|6.082e-163100.00ferredoxin (2fe-2s) [Nannochloropsis gaditana][more]
gi|298715104|emb|CBJ27792.1|4.634e-5250.00ferredoxin [Ectocarpus siliculosus][more]
gi|873237306|emb|CEL97897.1|1.064e-4758.46unnamed protein product [Vitrella brassicaformis C... [more]
gi|545704688|ref|XP_005704666.1|2.972e-3041.28ferredoxin [Galdieria sulphuraria] >gi|452821112|g... [more]
gi|1189382649|gb|OSX70086.1|9.437e-3054.87hypothetical protein BU14_0924s0003 [Porphyra umbi... [more]
gi|546324976|ref|XP_005718525.1|1.221e-2950.89unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|544213087|ref|XP_005536691.1|1.468e-2849.12similar to ferredoxin [Cyanidioschyzon merolae str... [more]
gi|1121298279|ref|WP_073610103.1|2.738e-2851.89ferredoxin [Phormidium tenue] >gi|1115282529|gb|OK... [more]
gi|1210114590|dbj|BAY33718.1|8.013e-2750.002Fe-2S ferredoxin [Nostoc carneum NIES-2107] >gi|1... [more]
gi|797206978|ref|WP_045867930.1|9.420e-2750.00ferredoxin [Tolypothrix sp. PCC 7601] >gi|40727328... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6374rna6374Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications