EWM24316.1, cds6359 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|585105708|gb|EWM24316.1| (ferredoxin (2fe-2s) [Nannochloropsis gaditana]) HSP 1 Score: 457.218 bits (1175), Expect = 6.082e-163 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0 Query: 1 MREGFLLLVLLLLSSTSQAFLQPAIQHEQNSKSHRSLFQQGRFHSPAALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEVGKRPNTILLAVTVRLNYFKMLF 218 MREGFLLLVLLLLSSTSQAFLQPAIQHEQNSKSHRSLFQQGRFHSPAALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEVGKRPNTILLAVTVRLNYFKMLF Sbjct: 1 MREGFLLLVLLLLSSTSQAFLQPAIQHEQNSKSHRSLFQQGRFHSPAALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEVGKRPNTILLAVTVRLNYFKMLF 218
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|298715104|emb|CBJ27792.1| (ferredoxin [Ectocarpus siliculosus]) HSP 1 Score: 176.792 bits (447), Expect = 4.634e-52 Identity = 94/188 (50.00%), Postives = 124/188 (65.96%), Query Frame = 0 Query: 8 LVLLLLSSTSQAFL-QPAIQHEQNSKSHRSLFQQGRFHSPAALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194 LV L ++ S+AFL PA+ R G + AA SP + ++ SPN+W + + PG GGIWPG PDA+ + VT V+ + + DVP DRYI+FA ED+GVD+P++N KRMCRNGCCTTCAVK+ EGKVK E ALGLL+D+K +GYAL+CCS P+SD+V LQ+ED+VY Sbjct: 35 LVWLSMTVQSRAFLVAPAV----GGGVCRPRAGAGSARTSAA---SP----LMAYDVKYSPNKW-WDEDDIVPGFGGIWPGDPDAETHHVTYVNKAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVY 210
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|873237306|emb|CEL97897.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 167.162 bits (422), Expect = 1.064e-47 Identity = 76/130 (58.46%), Postives = 101/130 (77.69%), Query Frame = 0 Query: 66 SPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYE 195 +P +W+ G ++P GG WPG P+AK YKVT++DP + +T DVPEDRYIFF+FE+S P+ N K+MCRNGCCTTCAV+++EG+VKM+ +GL R+M+ GYAL+C S PRSD+V ELQDEDEVY+ Sbjct: 133 TPMKWEM-GDRIKPYKGGPWPGDPNAKTYKVTIIDPVSGERHTQDVPEDRYIFFSFEESRNLPPIKNIKKMCRNGCCTTCAVRVREGEVKMDPQIGLTREMERAGYALTCVSYPRSDVVLELQDEDEVYK 261
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|545704688|ref|XP_005704666.1| (ferredoxin [Galdieria sulphuraria] >gi|452821112|gb|EME28146.1| ferredoxin [Galdieria sulphuraria]) HSP 1 Score: 119.398 bits (298), Expect = 2.972e-30 Identity = 71/172 (41.28%), Postives = 96/172 (55.81%), Query Frame = 0 Query: 35 RSLFQQGR------FHSPAALHASPP------KRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194 R+ F R FH L+ S +RLT Q LS W +G+ G P+A+KY+VTV + RT Y DVP DRYI+++F + G++LP C NGCCTTCA ++ G+++ ALGLL++MKNK YAL C S P+SD+ LQ+EDEVY Sbjct: 8 RTTFHSNRNRKLTSFHHCCPLYGSSRYYTRILRRLTRNCQQYLS---WTCHGETF---------GDPNARKYRVTVRNQRTGECYIRDVPTDRYIWWSFLEQGIELPS-----SCVNGCCTTCACRVVSGRIEQPLALGLLKEMKNKRYALLCVSYPKSDVEVVLQEEDEVY 162
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|1189382649|gb|OSX70086.1| (hypothetical protein BU14_0924s0003 [Porphyra umbilicalis]) HSP 1 Score: 119.398 bits (298), Expect = 9.437e-30 Identity = 62/113 (54.87%), Postives = 73/113 (64.60%), Query Frame = 0 Query: 83 GIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFED-SGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194 G PG PDA + VTV+D T+ VPEDRYI+ A E+ SG LP CR+GCCTTCAV++ G+V ALGLLR M+ GYAL C S PRSDI C LQ+EDEVY Sbjct: 54 GSLPGSPDAPTHTVTVLDGAGAVVQTLAVPEDRYIWHAMEEASGGRLP-----SSCRHGCCTTCAVRVTSGEVDQREALGLLRQMREVGYALLCVSKPRSDITCVLQEEDEVY 161
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|546324976|ref|XP_005718525.1| (unnamed protein product [Chondrus crispus] >gi|507115127|emb|CDF38620.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 119.398 bits (298), Expect = 1.221e-29 Identity = 57/112 (50.89%), Postives = 71/112 (63.39%), Query Frame = 0 Query: 83 GIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194 G PG P+AK + VTV DP+ VPEDRY++ D D+P C NGCCTTCAVK+ G+V ALGLL++M+++ YAL C S P+SDI C LQDEDEVY Sbjct: 113 GSLPGNPNAKTHTVTVHDPKNDRVLKYQVPEDRYVWHGMSDQDADIP-----SSCLNGCCTTCAVKITSGEVDQSEALGLLKEMRDQDYALLCVSYPKSDIECVLQDEDEVY 219
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|544213087|ref|XP_005536691.1| (similar to ferredoxin [Cyanidioschyzon merolae strain 10D] >gi|544216779|ref|XP_005538534.1| probable ferredoxin [Cyanidioschyzon merolae strain 10D] >gi|449017253|dbj|BAM80655.1| similar to ferredoxin [Cyanidioschyzon merolae strain 10D] >gi|449019096|dbj|BAM82498.1| probable ferredoxin [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 115.161 bits (287), Expect = 1.468e-28 Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 0 Query: 82 GGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYE 195 GG PG P A K+ VT+++ R + T+ VPEDRYI++ F ++G +LP C NGCCTTCA K+ G ++ ALGL R+ ++KGY L C S PRS +V LQ EDEVYE Sbjct: 61 GGALPGDPAAPKHNVTILNYRDDESLTLAVPEDRYIWWYFRENGYELPS-----SCLNGCCTTCAAKIVRGSLEQPEALGLTREFRDKGYCLLCVSYPRSALVLVLQSEDEVYE 169
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|1121298279|ref|WP_073610103.1| (ferredoxin [Phormidium tenue] >gi|1115282529|gb|OKH45698.1| ferredoxin [Phormidium tenue NIES-30]) HSP 1 Score: 112.464 bits (280), Expect = 2.738e-28 Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = 0 Query: 91 AKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEV 196 A+ + +TV +T YT++VPEDRYI A E GV+LP CRNG CTTCAV++ EG+V+ A+GL D++++GYAL C S PRS+I E QDEDEVYE+ Sbjct: 2 ARTHTITVHHRQTGRIYTVEVPEDRYILQAAESQGVELPFA-----CRNGACTTCAVRLLEGEVEQPEAMGLSPDLRDRGYALLCVSYPRSNIQAETQDEDEVYEL 102
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|1210114590|dbj|BAY33718.1| (2Fe-2S ferredoxin [Nostoc carneum NIES-2107] >gi|1210182413|dbj|BAZ01474.1| 2Fe-2S ferredoxin [Tolypothrix tenuis PCC 7101] >gi|1210255601|dbj|BAZ74603.1| 2Fe-2S ferredoxin [Aulosira laxa NIES-50]) HSP 1 Score: 108.612 bits (270), Expect = 8.013e-27 Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 0 Query: 91 AKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEV 196 ++ YK+ V D T YT+ VPEDRYI + E G +LP CRNG CTTCAV++ G++ A+GL +++ KGYAL C S PRSDI E QDEDEVYE+ Sbjct: 2 SQTYKIRVRDRNTGKEYTLQVPEDRYILHSAEQQGTELPF-----SCRNGACTTCAVRVLSGEIYQPEAIGLSPELRRKGYALLCVSYPRSDIEVETQDEDEVYEL 102
BLAST of EWM24316.1 vs. NCBI_GenBank
Match: gi|797206978|ref|WP_045867930.1| (ferredoxin [Tolypothrix sp. PCC 7601] >gi|407273281|gb|EKF04715.1| ferredoxin [Tolypothrix sp. PCC 7601] >gi|1210173005|dbj|BAY92080.1| 2Fe-2S ferredoxin [Fremyella diplosiphon NIES-3275]) HSP 1 Score: 108.612 bits (270), Expect = 9.420e-27 Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 0 Query: 91 AKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYEV 196 ++ YK+ V D T YT+ VPEDRYI + E G +LP CRNG CTTCAV++ G++ A+GL +++ KGYAL C S PRSDI E QDEDEVYE+ Sbjct: 2 SQTYKIRVRDRNTGKEYTIQVPEDRYILHSAEQQGTELPF-----SCRNGACTTCAVRVLSGEIYQPEAIGLSPELRRKGYALLCVSYPRSDIEVETQDEDEVYEL 102 The following BLAST results are available for this feature:
BLAST of EWM24316.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|