EWM24371.1, cds6305 (CDS) Nannochloropsis gaditana

Overview
NameEWM24371.1
Unique Namecds6305
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:240597..241220 +

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Properties
Property NameValue
Protein idEWM24371.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100246g6.10066.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:240597..241220 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM24371.1 vs. NCBI_GenBank
Match: gi|585105768|gb|EWM24371.1| (hypothetical protein Naga_100246g6 [Nannochloropsis gaditana])

HSP 1 Score: 426.017 bits (1094), Expect = 5.435e-151
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 
Query:    1 MHKGILRLSSIFLIHSAYFCSTFRLIGTNRLRTLFPQSRLYAPTLVAWVKDQPADLQETFGDRFQDSDHKEGQKEHMARKTTADPIKDSSTKVSAAKKASPKKKAEAPGKSRSGTNSVIQNTKLSAENKAEREFKTPRRYKEGSTKQKTRRGKSPEDLEDDVEVMAEKVGIELPEDEKQKEEEVESAIEATSDRPYREYSKQGALEV 207
            MHKGILRLSSIFLIHSAYFCSTFRLIGTNRLRTLFPQSRLYAPTLVAWVKDQPADLQETFGDRFQDSDHKEGQKEHMARKTTADPIKDSSTKVSAAKKASPKKKAEAPGKSRSGTNSVIQNTKLSAENKAEREFKTPRRYKEGSTKQKTRRGKSPEDLEDDVEVMAEKVGIELPEDEKQKEEEVESAIEATSDRPYREYSKQGALEV
Sbjct:    1 MHKGILRLSSIFLIHSAYFCSTFRLIGTNRLRTLFPQSRLYAPTLVAWVKDQPADLQETFGDRFQDSDHKEGQKEHMARKTTADPIKDSSTKVSAAKKASPKKKAEAPGKSRSGTNSVIQNTKLSAENKAEREFKTPRRYKEGSTKQKTRRGKSPEDLEDDVEVMAEKVGIELPEDEKQKEEEVESAIEATSDRPYREYSKQGALEV 207
[Close]
BLAST of EWM24371.1 vs. NCBI_GenBank
Match: gi|553191763|ref|XP_005855448.1| (dna polymerase beta [Nannochloropsis gaditana CCMP526] >gi|422293607|gb|EKU20907.1| dna polymerase beta [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 424.861 bits (1091), Expect = 3.451e-149
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 
Query:    1 MHKGILRLSSIFLIHSAYFCSTFRLIGTNRLRTLFPQSRLYAPTLVAWVKDQPADLQETFGDRFQDSDHKEGQKEHMARKTTADPIKDSSTKVSAAKKASPKKKAEAPGKSRSGTNSVIQNTKLSAENKAEREFKTPRRYKEGSTKQKTRRGKSPEDLEDDVEVMAEKVGIELPEDEKQKEEEVESAIEATSDRPYREYSKQGALE 206
            MHKGILRLSSIFLIHSAYFCSTFRLIGTNRLRTLFPQSRLYAPTLVAWVKDQPADLQETFGDRFQDSDHKEGQKEHMARKTTADPIKDSSTKVSAAKKASPKKKAEAPGKSRSGTNSVIQNTKLSAENKAEREFKTPRRYKEGSTKQKTRRGKSPEDLEDDVEVMAEKVGIELPEDEKQKEEEVESAIEATSDRPYREYSKQGALE
Sbjct:    1 MHKGILRLSSIFLIHSAYFCSTFRLIGTNRLRTLFPQSRLYAPTLVAWVKDQPADLQETFGDRFQDSDHKEGQKEHMARKTTADPIKDSSTKVSAAKKASPKKKAEAPGKSRSGTNSVIQNTKLSAENKAEREFKTPRRYKEGSTKQKTRRGKSPEDLEDDVEVMAEKVGIELPEDEKQKEEEVESAIEATSDRPYREYSKQGALE 206
The following BLAST results are available for this feature:
BLAST of EWM24371.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105768|gb|EWM24371.1|5.435e-151100.00hypothetical protein Naga_100246g6 [Nannochloropsi... [more]
gi|553191763|ref|XP_005855448.1|3.451e-149100.00dna polymerase beta [Nannochloropsis gaditana CCMP... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6320rna6320Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications