EWM24364.1, cds6302 (CDS) Nannochloropsis gaditana

Overview
NameEWM24364.1
Unique Namecds6302
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:236436..236553 -
Alignment locationCM002468.1:235717..236333 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24364.1
Productputative domain XH
Orig transcript idgnl|cribi|Naga_100246g9.10059.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:236436..236553 -
CM002468.1supercontigCM002468.1:235717..236333 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005379Uncharacterised_XH
Homology
[Close]
BLAST of EWM24364.1 vs. NCBI_GenBank
Match: gi|585105761|gb|EWM24364.1| (putative domain XH [Nannochloropsis gaditana])

HSP 1 Score: 503.827 bits (1296), Expect = 1.852e-180
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0 
Query:    1 MPSCVTPSPLFDSYILVLFSCGTLIPSVFTPVGPFGWKFKLNEAKHILVEAGTAELSDIIPVHVFCEATYEEVEKALIKDVRLPQLISSPKGGKNVDNNTSSITTTDAVTTRSRKRAASRKKGKQICRSALVYRALDAVDSLVRDATFDPFHRQHGRIIGTNHSHKLLLSLCEEWGPAMADLVVLKKEEIEKFCPSGHYPTPVLWKEGKEVTIGAVVRRMVEVLRETRNTKDRDKVRKREREQE 244
            MPSCVTPSPLFDSYILVLFSCGTLIPSVFTPVGPFGWKFKLNEAKHILVEAGTAELSDIIPVHVFCEATYEEVEKALIKDVRLPQLISSPKGGKNVDNNTSSITTTDAVTTRSRKRAASRKKGKQICRSALVYRALDAVDSLVRDATFDPFHRQHGRIIGTNHSHKLLLSLCEEWGPAMADLVVLKKEEIEKFCPSGHYPTPVLWKEGKEVTIGAVVRRMVEVLRETRNTKDRDKVRKREREQE
Sbjct:    1 MPSCVTPSPLFDSYILVLFSCGTLIPSVFTPVGPFGWKFKLNEAKHILVEAGTAELSDIIPVHVFCEATYEEVEKALIKDVRLPQLISSPKGGKNVDNNTSSITTTDAVTTRSRKRAASRKKGKQICRSALVYRALDAVDSLVRDATFDPFHRQHGRIIGTNHSHKLLLSLCEEWGPAMADLVVLKKEEIEKFCPSGHYPTPVLWKEGKEVTIGAVVRRMVEVLRETRNTKDRDKVRKREREQE 244
[Close]
BLAST of EWM24364.1 vs. NCBI_GenBank
Match: gi|553191788|ref|XP_005855455.1| (hypothetical protein NGA_0628720 [Nannochloropsis gaditana CCMP526] >gi|422293614|gb|EKU20914.1| hypothetical protein NGA_0628720 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 107.071 bits (266), Expect = 1.033e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0 
Query:   40 KLNEAKHILVEAGTAELSDIIPVHVFCEATYEEVEKALIKDVRLPQLISSPKG 92
            +LNEAKHILVEAGTAELSDIIPVHVFCEATYEEVEKALIKDVRLPQLISSPKG
Sbjct:   62 ELNEAKHILVEAGTAELSDIIPVHVFCEATYEEVEKALIKDVRLPQLISSPKG 114
[Close]
BLAST of EWM24364.1 vs. NCBI_GenBank
Match: gi|585103647|gb|EWM22930.1| (putative domain XH [Nannochloropsis gaditana])

HSP 1 Score: 92.0485 bits (227), Expect = 2.423e-18
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 0 
Query:  134 RALDAVDSLVRDATFDPFHRQHGRIIGTNHSHKLLLSLCEEWGPAMADLVVLKKEEIEKFCPSGHYPTPVLW 205
            R +  +D+ +RDA+FDP  RQ GRI+G +  H +L +L EE+G AMA+LVV KK+E+E++CPSG YP  VLW
Sbjct:  224 RVMTRIDATIRDASFDPLMRQEGRIVGVDWDHMVLRNLQEEYGRAMAELVVAKKKEVERYCPSGSYPVLVLW 295
The following BLAST results are available for this feature:
BLAST of EWM24364.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105761|gb|EWM24364.1|1.852e-180100.00putative domain XH [Nannochloropsis gaditana][more]
gi|553191788|ref|XP_005855455.1|1.033e-2598.11hypothetical protein NGA_0628720 [Nannochloropsis ... [more]
gi|585103647|gb|EWM22930.1|2.423e-1854.17putative domain XH [Nannochloropsis gaditana][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6317rna6317Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications