EWM24367.1, cds6298 (CDS) Nannochloropsis gaditana

Overview
NameEWM24367.1
Unique Namecds6298
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:229547..230594 -
Alignment locationCM002468.1:229266..229372 -
Alignment locationCM002468.1:228974..229068 -
Alignment locationCM002468.1:228762..228768 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24367.1
Productdna mismatch repair protein
Orig transcript idgnl|cribi|Naga_100246g12.10062.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:229547..230594 -
CM002468.1supercontigCM002468.1:229266..229372 -
CM002468.1supercontigCM002468.1:228974..229068 -
CM002468.1supercontigCM002468.1:228762..228768 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006298mismatch repair
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0000166nucleotide binding
GO:0030983mismatched DNA binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR016151DNA_mismatch_repair_MutS_N
IPR007695DNA_mismatch_repair_MutS-lik_N
Homology
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|585105764|gb|EWM24367.1| (dna mismatch repair protein [Nannochloropsis gaditana])

HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0
Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0
Query:    1 MEVSSRPVARHLLFCFFLSALLLHVQLPTATTTTNIMLSCAVRKHVPHISGFRTRLCFAPWRLRETATSTSHRRPSSSLDRVAPSHVLRVSSRSSSSSNSNEQARKGPGRSKATSKSPPRGAKRGGKSSRSLSSASSSMASPENERAVADIIGKRTEAGKKAGGLEGSLVRERDMLISEDAGRMAPREEEKAENDDASDGGKSQHGSNQSLPLLLLPSSPPSPFTSPSPPPSSPFDLPDDHLAGHLQRLYAGSQPPSPSSSLGPDTLHPYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYLP 418
            MEVSSRPVARHLLFCFFLSALLLHVQLPTATTTTNIMLSCAVRKHVPHISGFRTRLCFAPWRLRETATSTSHRRPSSSLDRVAPSHVLRVSSRSSSSSNSNEQARKGPGRSKATSKSPPRGAKRGGKSSRSLSSASSSMASPENERAVADIIGKRTEAGKKAGGLEGSLVRERDMLISEDAGRMAPREEEKAENDDASDGGKSQHGSNQSLPLLLLPSSPPSPFTSPSPPPSSPFDLPDDHLAGHLQRLYAGSQPPSPSSSLGPDTLHPYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYLP
Sbjct:    1 MEVSSRPVARHLLFCFFLSALLLHVQLPTATTTTNIMLSCAVRKHVPHISGFRTRLCFAPWRLRETATSTSHRRPSSSLDRVAPSHVLRVSSRSSSSSNSNEQARKGPGRSKATSKSPPRGAKRGGKSSRSLSSASSSMASPENERAVADIIGKRTEAGKKAGGLEGSLVRERDMLISEDAGRMAPREEEKAENDDASDGGKSQHGSNQSLPLLLLPSSPPSPFTSPSPPPSSPFDLPDDHLAGHLQRLYAGSQPPSPSSSLGPDTLHPYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYLP 418          
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|553191775|ref|XP_005855452.1| (dna mismatch repair protein [Nannochloropsis gaditana CCMP526] >gi|422293611|gb|EKU20911.1| dna mismatch repair protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 286.189 bits (731), Expect = 1.336e-83
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query:  277 MLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYL 417
            MLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYL
Sbjct:    1 MLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYL 141          
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|873240844|emb|CEL93038.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 204.912 bits (520), Expect = 2.166e-54
Identity = 105/190 (55.26%), Postives = 136/190 (71.58%), Query Frame = 0
Query:  231 PSSPFDLP-DDHLAGHLQRLYAGSQPPSPSSSLGPDT-LHPYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSA-SPRTSKLKSRLLSQIVSPGASTYL 417
            P SP D   DD L  HL                  DT +HP WL+RL  L+RPAA+ L+  +   N LGFDA  +L  ++GTL+++VL QK+ HP+KV+L RVGEFYETYG+DA+M+VEYAGLNPMG+KAKAGCP++N+Q+TLD LT AGLTVAV EE+SD D+   P + ++K R+L+QIVSPG+STYL
Sbjct:   32 PFSPLDYSGDDLLVAHLI-----------------DTKVHPMWLERLKKLERPAAKELIPSLRGENMLGFDAASSLV-KKGTLFEWVLQQKRKHPDKVLLVRVGEFYETYGIDALMMVEYAGLNPMGSKAKAGCPIRNIQSTLDSLTRAGLTVAVFEELSDADAERGPPSKRIKRRVLAQIVSPGSSTYL 203          
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|922854610|gb|KOO23129.1| (DNA mismatch repair protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 163.696 bits (413), Expect = 2.472e-40
Identity = 81/160 (50.62%), Postives = 114/160 (71.25%), Query Frame = 0
Query:  259 SSSLGPDTLH--PYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTY 416
            +SS G  +L   P+W +RL+ L +PAA ALV  +   N L F+    +++  GTL +F + +K+  P++++L RVGEFYE +G DA+MLV++AGLNPMG+K +AGCPV+NVQATLD LTSAGLTVAV EE++   +   R  KLK R+L+Q+VSP +  Y
Sbjct:   27 TSSAGESSLQLTPFWRQRLAELTKPAAIALVPYLSTENALCFEN--KVARTSGTLVEFAVLEKEKRPDQLLLIRVGEFYEAFGFDALMLVQWAGLNPMGSKCRAGCPVQNVQATLDALTSAGLTVAVYEEVAPAGTGEGRFRKLKQRVLAQVVSPASPVY 184          
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|219110543|ref|XP_002177023.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411558|gb|EEC51486.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 149.443 bits (376), Expect = 2.231e-35
Identity = 83/183 (45.36%), Postives = 113/183 (61.75%), Query Frame = 0
Query:  267 LHPYWLKRLSMLQRPAARALVSQILPTN-PLGFD--AGPTLSQRRGTLYD-----------------------FVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPR------TSKLKSRLLSQIVSPGASTYL 417
            +H YW + L  + RP+AR LV+Q+  T  P+G++  A P +   RGT+ D                       +   QK+++P+ +ILTR G+FYET+G+DA+MLVE+ GLNPMGNKAKAGCP +NVQAT+DGL S G  VAV EE  D DS++         S++KSR L+QIVS  + TYL
Sbjct:  231 IHTYWQEPLLQVTRPSARTLVAQLDATQCPMGYNPLAQP-MDPLRGTVLDTDAQSSSSTTATTTAGKKGSFLAYCRQQKESYPDCIILTRCGDFYETFGLDAVMLVEHCGLNPMGNKAKAGCPYRNVQATIDGLISQGFRVAVYEEAPDTDSSTGTGATGGAKSRIKSRFLAQIVSTSSPTYL 412          
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|1210525653|dbj|GAX15722.1| (hypothetical protein FisN_3Hh196 [Fistulifera solaris])

HSP 1 Score: 142.51 bits (358), Expect = 5.085e-33
Identity = 79/175 (45.14%), Postives = 109/175 (62.29%), Query Frame = 0
Query:  270 YWLKRLSMLQRPAARALVSQILPTN-PLGFD--AGP------------------TLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRT------SKLKSRLLSQIVSPGASTYL 417
            +W + L  L+RP+++ALV Q+     P+GFD  A P                  T + ++G+   F   QK+ +P+ V+LTR G+FYE +G+DAIMLVE+ GLN M  KA+AGCP++NVQAT+DGLTS G  VAV EE +D D++S         S++K R LSQIVSP + TYL
Sbjct:  210 HWREPLLQLRRPSSQALVLQLDSGQCPMGFDPLAQPFDPLRGTTDTLEEEATRTTTAGKKGSFLGFCREQKEKYPDCVLLTRCGDFYEAFGIDAIMLVEHCGLNSMAGKARAGCPIRNVQATIDGLTSQGFRVAVYEEGTDTDASSGAGASAGAKSRIKHRFLSQIVSPASPTYL 384          
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|397582395|gb|EJK52272.1| (hypothetical protein THAOC_28475 [Thalassiosira oceanica])

HSP 1 Score: 138.658 bits (348), Expect = 1.866e-32
Identity = 86/207 (41.55%), Postives = 116/207 (56.04%), Query Frame = 0
Query:  217 PSSPPSPFTSPSPPPSSPFDLPDDHLAGHLQRLYAGSQPPSPSSSLGPDTLHPYWLKRLSMLQRPAARALVSQILP-TNPLGFD----AGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEI-SDLDSASPRTSKLKSRLLSQIVSPGASTYL 417
            P+ PP    + S  P SP+D         +  L++G  P          ++ PYW + L  L + ++R+LV Q+     P+G+D       T +     L  FV  QK  HP+ V+L RVG+FYE+YG DA+MLVE+ GLN M  +A+AGCP  NVQAT+DGLTSAGL VAV EE     D  S R  ++K R LSQ+VS    TY+
Sbjct:  195 PTMPPPAIPAVSDVPPSPYDR-------MVADLFSGDAP----------SIDPYWTEPLLRLAKSSSRSLVRQLRSGVCPMGYDPQAATSSTATGGTTKLLTFVRAQKARHPDAVLLVRVGDFYESYGTDAVMLVEHCGLNSMAGRARAGCPWGNVQATVDGLTSAGLRVAVYEERPWGSDPGSKR--RMKERYLSQVVSSANPTYM 382          
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|397571708|gb|EJK47925.1| (hypothetical protein THAOC_33320, partial [Thalassiosira oceanica])

HSP 1 Score: 134.806 bits (338), Expect = 3.034e-32
Identity = 85/207 (41.06%), Postives = 116/207 (56.04%), Query Frame = 0
Query:  217 PSSPPSPFTSPSPPPSSPFDLPDDHLAGHLQRLYAGSQPPSPSSSLGPDTLHPYWLKRLSMLQRPAARALVSQILP-TNPLGFD----AGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEI-SDLDSASPRTSKLKSRLLSQIVSPGASTYL 417
            P+ PP    + S  P SP+D         +  L++G  P          ++ PYW + L  L + ++R+LV Q+     P+G+D       T +     L  FV  QK  HP+ V+L RVG+FYE+YG DA+MLVE+ GLN M  +A+AGCP  NVQAT+DGLTSAGL VAV EE     D  S R  ++K R LS++VS    TY+
Sbjct:   86 PTMPPPAIPAVSDVPPSPYDR-------MVADLFSGDAP----------SIDPYWTEPLLRLAKSSSRSLVRQLRSGVCPMGYDPQAATSSTATGGTTKLLTFVRDQKARHPDAVLLVRVGDFYESYGTDAVMLVEHCGLNSMAGRARAGCPWGNVQATVDGLTSAGLRVAVYEERPWGSDPGSRR--RMKERYLSKVVSSANPTYM 273          
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|1210525415|dbj|GAX15758.1| (hypothetical protein FisN_3Lh196 [Fistulifera solaris])

HSP 1 Score: 139.043 bits (349), Expect = 6.646e-32
Identity = 77/174 (44.25%), Postives = 107/174 (61.49%), Query Frame = 0
Query:  271 WLKRLSMLQRPAARALVSQILPTN-PLGFD--AGP------------------TLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRT------SKLKSRLLSQIVSPGASTYL 417
            W + L  L+RP+++ALV Q+     P+GFD  A P                  T + ++G+   F   QK+ +P+ V+LTR G+FYE +G+DAIMLVE+ GLN M  KA+AGCP++NVQ T+DGLT+ G  VAV EE +D D++S         S++K R LSQIVSP + TYL
Sbjct:  210 WREPLLQLRRPSSKALVLQLDSGQCPMGFDPLAQPFDSLRGSMDTLEEEATRTTTAGKKGSFLGFCREQKEKYPDCVLLTRCGDFYEAFGIDAIMLVEHCGLNSMAGKARAGCPIRNVQGTIDGLTNQGFRVAVYEEGTDTDASSGAGASAGAKSRIKHRFLSQIVSPASPTYL 383          
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|1008949515|gb|KYK67122.1| (MSH1 protein [Toxoplasma gondii TgCatPRC2])

HSP 1 Score: 139.043 bits (349), Expect = 7.431e-32
Identity = 77/156 (49.36%), Postives = 103/156 (66.03%), Query Frame = 0
Query:  267 LHPYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTL---SQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRT-SKLKSRLLSQIVSPGASTYLP 418
            +HP +L RL +L RPA+R L+S       L FD  P++   S     L  FV  QK+  P+KV++ +VG+F+E YG+DA++LVEY GLNPMG KAKAGCP +N+Q TLD LTS G +V+V EE +   +A+P      K RLL+QIVSP +  YLP
Sbjct:  252 VHPTFLARLPLLSRPASRRLLSF------LSFD-HPSMVPDSLHMPPLLVFVREQKRLRPDKVLIIQVGDFFEAYGLDAVLLVEYCGLNPMGGKAKAGCPKQNLQQTLDCLTSEGFSVSVFEEFASPVAATPIAPGNRKLRLLTQIVSPSSPLYLP 400          
The following BLAST results are available for this feature:
BLAST of EWM24367.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105764|gb|EWM24367.1|0.000e+0100.00dna mismatch repair protein [Nannochloropsis gadit... [more]
gi|553191775|ref|XP_005855452.1|1.336e-83100.00dna mismatch repair protein [Nannochloropsis gadit... [more]
gi|873240844|emb|CEL93038.1|2.166e-5455.26unnamed protein product [Vitrella brassicaformis C... [more]
gi|922854610|gb|KOO23129.1|2.472e-4050.63DNA mismatch repair protein [Chrysochromulina sp. ... [more]
gi|219110543|ref|XP_002177023.1|2.231e-3545.36predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210525653|dbj|GAX15722.1|5.085e-3345.14hypothetical protein FisN_3Hh196 [Fistulifera sola... [more]
gi|397582395|gb|EJK52272.1|1.866e-3241.55hypothetical protein THAOC_28475 [Thalassiosira oc... [more]
gi|397571708|gb|EJK47925.1|3.034e-3241.06hypothetical protein THAOC_33320, partial [Thalass... [more]
gi|1210525415|dbj|GAX15758.1|6.646e-3244.25hypothetical protein FisN_3Lh196 [Fistulifera sola... [more]
gi|1008949515|gb|KYK67122.1|7.431e-3249.36MSH1 protein [Toxoplasma gondii TgCatPRC2][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6313rna6313Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications