EWM24367.1, cds6298 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|585105764|gb|EWM24367.1| (dna mismatch repair protein [Nannochloropsis gaditana]) HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0 Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0 Query: 1 MEVSSRPVARHLLFCFFLSALLLHVQLPTATTTTNIMLSCAVRKHVPHISGFRTRLCFAPWRLRETATSTSHRRPSSSLDRVAPSHVLRVSSRSSSSSNSNEQARKGPGRSKATSKSPPRGAKRGGKSSRSLSSASSSMASPENERAVADIIGKRTEAGKKAGGLEGSLVRERDMLISEDAGRMAPREEEKAENDDASDGGKSQHGSNQSLPLLLLPSSPPSPFTSPSPPPSSPFDLPDDHLAGHLQRLYAGSQPPSPSSSLGPDTLHPYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYLP 418 MEVSSRPVARHLLFCFFLSALLLHVQLPTATTTTNIMLSCAVRKHVPHISGFRTRLCFAPWRLRETATSTSHRRPSSSLDRVAPSHVLRVSSRSSSSSNSNEQARKGPGRSKATSKSPPRGAKRGGKSSRSLSSASSSMASPENERAVADIIGKRTEAGKKAGGLEGSLVRERDMLISEDAGRMAPREEEKAENDDASDGGKSQHGSNQSLPLLLLPSSPPSPFTSPSPPPSSPFDLPDDHLAGHLQRLYAGSQPPSPSSSLGPDTLHPYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYLP Sbjct: 1 MEVSSRPVARHLLFCFFLSALLLHVQLPTATTTTNIMLSCAVRKHVPHISGFRTRLCFAPWRLRETATSTSHRRPSSSLDRVAPSHVLRVSSRSSSSSNSNEQARKGPGRSKATSKSPPRGAKRGGKSSRSLSSASSSMASPENERAVADIIGKRTEAGKKAGGLEGSLVRERDMLISEDAGRMAPREEEKAENDDASDGGKSQHGSNQSLPLLLLPSSPPSPFTSPSPPPSSPFDLPDDHLAGHLQRLYAGSQPPSPSSSLGPDTLHPYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYLP 418
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|553191775|ref|XP_005855452.1| (dna mismatch repair protein [Nannochloropsis gaditana CCMP526] >gi|422293611|gb|EKU20911.1| dna mismatch repair protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 286.189 bits (731), Expect = 1.336e-83 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 Query: 277 MLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYL 417 MLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYL Sbjct: 1 MLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTYL 141
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|873240844|emb|CEL93038.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 204.912 bits (520), Expect = 2.166e-54 Identity = 105/190 (55.26%), Postives = 136/190 (71.58%), Query Frame = 0 Query: 231 PSSPFDLP-DDHLAGHLQRLYAGSQPPSPSSSLGPDT-LHPYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSA-SPRTSKLKSRLLSQIVSPGASTYL 417 P SP D DD L HL DT +HP WL+RL L+RPAA+ L+ + N LGFDA +L ++GTL+++VL QK+ HP+KV+L RVGEFYETYG+DA+M+VEYAGLNPMG+KAKAGCP++N+Q+TLD LT AGLTVAV EE+SD D+ P + ++K R+L+QIVSPG+STYL Sbjct: 32 PFSPLDYSGDDLLVAHLI-----------------DTKVHPMWLERLKKLERPAAKELIPSLRGENMLGFDAASSLV-KKGTLFEWVLQQKRKHPDKVLLVRVGEFYETYGIDALMMVEYAGLNPMGSKAKAGCPIRNIQSTLDSLTRAGLTVAVFEELSDADAERGPPSKRIKRRVLAQIVSPGSSTYL 203
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|922854610|gb|KOO23129.1| (DNA mismatch repair protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 163.696 bits (413), Expect = 2.472e-40 Identity = 81/160 (50.62%), Postives = 114/160 (71.25%), Query Frame = 0 Query: 259 SSSLGPDTLH--PYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRTSKLKSRLLSQIVSPGASTY 416 +SS G +L P+W +RL+ L +PAA ALV + N L F+ +++ GTL +F + +K+ P++++L RVGEFYE +G DA+MLV++AGLNPMG+K +AGCPV+NVQATLD LTSAGLTVAV EE++ + R KLK R+L+Q+VSP + Y Sbjct: 27 TSSAGESSLQLTPFWRQRLAELTKPAAIALVPYLSTENALCFEN--KVARTSGTLVEFAVLEKEKRPDQLLLIRVGEFYEAFGFDALMLVQWAGLNPMGSKCRAGCPVQNVQATLDALTSAGLTVAVYEEVAPAGTGEGRFRKLKQRVLAQVVSPASPVY 184
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|219110543|ref|XP_002177023.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411558|gb|EEC51486.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 149.443 bits (376), Expect = 2.231e-35 Identity = 83/183 (45.36%), Postives = 113/183 (61.75%), Query Frame = 0 Query: 267 LHPYWLKRLSMLQRPAARALVSQILPTN-PLGFD--AGPTLSQRRGTLYD-----------------------FVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPR------TSKLKSRLLSQIVSPGASTYL 417 +H YW + L + RP+AR LV+Q+ T P+G++ A P + RGT+ D + QK+++P+ +ILTR G+FYET+G+DA+MLVE+ GLNPMGNKAKAGCP +NVQAT+DGL S G VAV EE D DS++ S++KSR L+QIVS + TYL Sbjct: 231 IHTYWQEPLLQVTRPSARTLVAQLDATQCPMGYNPLAQP-MDPLRGTVLDTDAQSSSSTTATTTAGKKGSFLAYCRQQKESYPDCIILTRCGDFYETFGLDAVMLVEHCGLNPMGNKAKAGCPYRNVQATIDGLISQGFRVAVYEEAPDTDSSTGTGATGGAKSRIKSRFLAQIVSTSSPTYL 412
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|1210525653|dbj|GAX15722.1| (hypothetical protein FisN_3Hh196 [Fistulifera solaris]) HSP 1 Score: 142.51 bits (358), Expect = 5.085e-33 Identity = 79/175 (45.14%), Postives = 109/175 (62.29%), Query Frame = 0 Query: 270 YWLKRLSMLQRPAARALVSQILPTN-PLGFD--AGP------------------TLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRT------SKLKSRLLSQIVSPGASTYL 417 +W + L L+RP+++ALV Q+ P+GFD A P T + ++G+ F QK+ +P+ V+LTR G+FYE +G+DAIMLVE+ GLN M KA+AGCP++NVQAT+DGLTS G VAV EE +D D++S S++K R LSQIVSP + TYL Sbjct: 210 HWREPLLQLRRPSSQALVLQLDSGQCPMGFDPLAQPFDPLRGTTDTLEEEATRTTTAGKKGSFLGFCREQKEKYPDCVLLTRCGDFYEAFGIDAIMLVEHCGLNSMAGKARAGCPIRNVQATIDGLTSQGFRVAVYEEGTDTDASSGAGASAGAKSRIKHRFLSQIVSPASPTYL 384
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|397582395|gb|EJK52272.1| (hypothetical protein THAOC_28475 [Thalassiosira oceanica]) HSP 1 Score: 138.658 bits (348), Expect = 1.866e-32 Identity = 86/207 (41.55%), Postives = 116/207 (56.04%), Query Frame = 0 Query: 217 PSSPPSPFTSPSPPPSSPFDLPDDHLAGHLQRLYAGSQPPSPSSSLGPDTLHPYWLKRLSMLQRPAARALVSQILP-TNPLGFD----AGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEI-SDLDSASPRTSKLKSRLLSQIVSPGASTYL 417 P+ PP + S P SP+D + L++G P ++ PYW + L L + ++R+LV Q+ P+G+D T + L FV QK HP+ V+L RVG+FYE+YG DA+MLVE+ GLN M +A+AGCP NVQAT+DGLTSAGL VAV EE D S R ++K R LSQ+VS TY+ Sbjct: 195 PTMPPPAIPAVSDVPPSPYDR-------MVADLFSGDAP----------SIDPYWTEPLLRLAKSSSRSLVRQLRSGVCPMGYDPQAATSSTATGGTTKLLTFVRAQKARHPDAVLLVRVGDFYESYGTDAVMLVEHCGLNSMAGRARAGCPWGNVQATVDGLTSAGLRVAVYEERPWGSDPGSKR--RMKERYLSQVVSSANPTYM 382
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|397571708|gb|EJK47925.1| (hypothetical protein THAOC_33320, partial [Thalassiosira oceanica]) HSP 1 Score: 134.806 bits (338), Expect = 3.034e-32 Identity = 85/207 (41.06%), Postives = 116/207 (56.04%), Query Frame = 0 Query: 217 PSSPPSPFTSPSPPPSSPFDLPDDHLAGHLQRLYAGSQPPSPSSSLGPDTLHPYWLKRLSMLQRPAARALVSQILP-TNPLGFD----AGPTLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEI-SDLDSASPRTSKLKSRLLSQIVSPGASTYL 417 P+ PP + S P SP+D + L++G P ++ PYW + L L + ++R+LV Q+ P+G+D T + L FV QK HP+ V+L RVG+FYE+YG DA+MLVE+ GLN M +A+AGCP NVQAT+DGLTSAGL VAV EE D S R ++K R LS++VS TY+ Sbjct: 86 PTMPPPAIPAVSDVPPSPYDR-------MVADLFSGDAP----------SIDPYWTEPLLRLAKSSSRSLVRQLRSGVCPMGYDPQAATSSTATGGTTKLLTFVRDQKARHPDAVLLVRVGDFYESYGTDAVMLVEHCGLNSMAGRARAGCPWGNVQATVDGLTSAGLRVAVYEERPWGSDPGSRR--RMKERYLSKVVSSANPTYM 273
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|1210525415|dbj|GAX15758.1| (hypothetical protein FisN_3Lh196 [Fistulifera solaris]) HSP 1 Score: 139.043 bits (349), Expect = 6.646e-32 Identity = 77/174 (44.25%), Postives = 107/174 (61.49%), Query Frame = 0 Query: 271 WLKRLSMLQRPAARALVSQILPTN-PLGFD--AGP------------------TLSQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRT------SKLKSRLLSQIVSPGASTYL 417 W + L L+RP+++ALV Q+ P+GFD A P T + ++G+ F QK+ +P+ V+LTR G+FYE +G+DAIMLVE+ GLN M KA+AGCP++NVQ T+DGLT+ G VAV EE +D D++S S++K R LSQIVSP + TYL Sbjct: 210 WREPLLQLRRPSSKALVLQLDSGQCPMGFDPLAQPFDSLRGSMDTLEEEATRTTTAGKKGSFLGFCREQKEKYPDCVLLTRCGDFYEAFGIDAIMLVEHCGLNSMAGKARAGCPIRNVQGTIDGLTNQGFRVAVYEEGTDTDASSGAGASAGAKSRIKHRFLSQIVSPASPTYL 383
BLAST of EWM24367.1 vs. NCBI_GenBank
Match: gi|1008949515|gb|KYK67122.1| (MSH1 protein [Toxoplasma gondii TgCatPRC2]) HSP 1 Score: 139.043 bits (349), Expect = 7.431e-32 Identity = 77/156 (49.36%), Postives = 103/156 (66.03%), Query Frame = 0 Query: 267 LHPYWLKRLSMLQRPAARALVSQILPTNPLGFDAGPTL---SQRRGTLYDFVLTQKKAHPEKVILTRVGEFYETYGVDAIMLVEYAGLNPMGNKAKAGCPVKNVQATLDGLTSAGLTVAVIEEISDLDSASPRT-SKLKSRLLSQIVSPGASTYLP 418 +HP +L RL +L RPA+R L+S L FD P++ S L FV QK+ P+KV++ +VG+F+E YG+DA++LVEY GLNPMG KAKAGCP +N+Q TLD LTS G +V+V EE + +A+P K RLL+QIVSP + YLP Sbjct: 252 VHPTFLARLPLLSRPASRRLLSF------LSFD-HPSMVPDSLHMPPLLVFVREQKRLRPDKVLIIQVGDFFEAYGLDAVLLVEYCGLNPMGGKAKAGCPKQNLQQTLDCLTSEGFSVSVFEEFASPVAATPIAPGNRKLRLLTQIVSPSSPLYLP 400 The following BLAST results are available for this feature:
BLAST of EWM24367.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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