EWM24396.1, cds6280 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|585105798|gb|EWM24396.1| (hypothetical protein Naga_100283g3 [Nannochloropsis gaditana]) HSP 1 Score: 461.07 bits (1185), Expect = 2.587e-164 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0 Query: 1 MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKEEAVQAAQALHQVAEKAAQEISAEEARIKASSSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDLENYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGMGGNAPGGGGGGMRSGGSR 225 MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKEEAVQAAQALHQVAEKAAQEISAEEARIKASSSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDLENYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGMGGNAPGGGGGGMRSGGSR Sbjct: 1 MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKEEAVQAAQALHQVAEKAAQEISAEEARIKASSSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDLENYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGMGGNAPGGGGGGMRSGGSR 225
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|553192318|ref|XP_005855551.1| (hypothetical protein NGA_0641800, partial [Nannochloropsis gaditana CCMP526] >gi|422293517|gb|EKU20817.1| hypothetical protein NGA_0641800, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 134.035 bits (336), Expect = 2.102e-37 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 Query: 1 MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKE 66 MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKE Sbjct: 1 MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKE 66
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|298715173|emb|CBJ34007.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 74.3294 bits (181), Expect = 3.123e-12 Identity = 46/157 (29.30%), Postives = 79/157 (50.32%), Query Frame = 0 Query: 73 QALHQVAEKAAQEISAEEARIKASSSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFA--PLHA--------------------EEEEQFGPFDLENYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGM 207 + +++ + A +I+++EA+I+ + + + +LPWE E IL+ LME+IL++S +E+ F PL + ++ F L+ + +V ++LSLDP L K+HARL R E+ FW YF R A LR+ + Sbjct: 48 EEINKAIQNAEDDITSKEAKIQQEDAGL--KQAEIKILPWETRIEKMAILSHGLMEKILSLSLEESNFTTPPLESGTKPEEISEDSALQGNGGADDDRNGAAAFQLDRHTSVAIKMLSLDPNLAKIHARLISR-MPERTFWYHYFSRVATLRAEVDL 201
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|223998220|ref|XP_002288783.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975891|gb|EED94219.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 69.707 bits (169), Expect = 1.802e-10 Identity = 43/143 (30.07%), Postives = 60/143 (41.96%), Query Frame = 0 Query: 105 SLVSLLPWEANDESQEILTQPLMEQILAISHDEATFA-PL----------------------HAEEEEQ-----------------FGPFDLENYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGM 207 +L +LPW+ D EIL E IL +S E TF P A++ EQ FDL+ +V +I RL +DP L +MH+RL G+ E FW++YF+ CA R G+ Sbjct: 62 TLAEILPWDTRDAEMEILVDECKEAILGLSAREETFTGPFVLDGGLPSGEEEGEGEVDSDLKAAKDLEQAEKSAGKLSKLQPLPALLADFDLDTHVGLIQRLFEVDPKLVEMHSRLSSGGKRELTFWKNYFFHCAYTRYEAGL 204
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|1210524952|dbj|GAX16144.1| (hypothetical protein FisN_3Hh375 [Fistulifera solaris]) HSP 1 Score: 68.9366 bits (167), Expect = 2.229e-10 Identity = 47/137 (34.31%), Postives = 76/137 (55.47%), Query Frame = 0 Query: 70 QAAQALHQVAEKAAQEISAEEARIKASS------SAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDL-ENYVTVITRLLSLDPALEKMHARLGGR-GREEKEFWQSYFYRC 198 + A + +++A ++AE +R++ S S + P +L ++ + + + QEIL L E+I+A+S +++TF HA + PF L E + +I RLL LD L HARL GR +E EFW++YF RC Sbjct: 62 ETAGGVASFVQRSAMTVAAELSRLEESELTGECESGEIIPLNLPWVIKVDEDSDDQEILV--LKERIMALSREDSTFLRSHATSDSP--PFSLDEPRIQLIRRLLELDENLATSHARLSGRVDVKETEFWKNYFDRC 194
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|1210531079|dbj|GAX10180.1| (hypothetical protein FisN_3Lh375 [Fistulifera solaris]) HSP 1 Score: 65.855 bits (159), Expect = 2.835e-9 Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 0 Query: 70 QAAQALHQVAEKAAQEISAEEARIKAS------SSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDLENYVTVITRLLSLDPALEKMHARLGGR-GREEKEFWQSYFYRC 198 + A + +++A ++AE +R++ S S + P +L ++ + + + QEIL L E+I+A+S +++TF HA + D E + +I RLL LD L HARL GR +E EFW++YF RC Sbjct: 64 ETAGGVASFVQRSAMTVAAELSRLEESELTGECKSGEIIPLNLPWVIKVDEDSDYQEILV--LKERIMALSREDSTFFGSHATADSPSFSLD-EPRIQLIRRLLELDENLATSHARLSGRVDVKETEFWKNYFDRC 196
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|1173880836|gb|OQR67530.1| (synapse-associated protein 1-like, partial [Tropilaelaps mercedesae]) HSP 1 Score: 61.2326 bits (147), Expect = 1.084e-7 Identity = 39/112 (34.82%), Postives = 57/112 (50.89%), Query Frame = 0 Query: 110 LPWEANDESQEILTQPLMEQILAISHDEATFA--PLHAEEEEQFGPFDLE-NYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGMGGNAPGGGGGG 218 LPW + +E + +QIL++S D+ TF P + + E FDLE Y V +L DP LEKM L + E +FW++YFYR + ++ + A GGG G Sbjct: 31 LPWAGCENPEE-----MKQQILSLSEDKRTFVRNPPNGVQFE----FDLEGQYAPVAMAMLKEDPRLEKMRFDLVPKLISEADFWRNYFYRVSLVKQSSQLNSLAKSGGGDG 133 The following BLAST results are available for this feature:
BLAST of EWM24396.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|