EWM24396.1, cds6280 (CDS) Nannochloropsis gaditana

Overview
NameEWM24396.1
Unique Namecds6280
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:196252..196383 -
Alignment locationCM002468.1:196060..196125 -
Alignment locationCM002468.1:195353..195832 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24396.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100283g3.8478.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:196252..196383 -
CM002468.1supercontigCM002468.1:196060..196125 -
CM002468.1supercontigCM002468.1:195353..195832 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005607BSD
Homology
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|585105798|gb|EWM24396.1| (hypothetical protein Naga_100283g3 [Nannochloropsis gaditana])

HSP 1 Score: 461.07 bits (1185), Expect = 2.587e-164
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKEEAVQAAQALHQVAEKAAQEISAEEARIKASSSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDLENYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGMGGNAPGGGGGGMRSGGSR 225
            MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKEEAVQAAQALHQVAEKAAQEISAEEARIKASSSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDLENYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGMGGNAPGGGGGGMRSGGSR
Sbjct:    1 MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKEEAVQAAQALHQVAEKAAQEISAEEARIKASSSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDLENYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGMGGNAPGGGGGGMRSGGSR 225          
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|553192318|ref|XP_005855551.1| (hypothetical protein NGA_0641800, partial [Nannochloropsis gaditana CCMP526] >gi|422293517|gb|EKU20817.1| hypothetical protein NGA_0641800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 134.035 bits (336), Expect = 2.102e-37
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
Query:    1 MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKE 66
            MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKE
Sbjct:    1 MSEDNPATRSPPASTTATNWFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKE 66          
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|298715173|emb|CBJ34007.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 74.3294 bits (181), Expect = 3.123e-12
Identity = 46/157 (29.30%), Postives = 79/157 (50.32%), Query Frame = 0
Query:   73 QALHQVAEKAAQEISAEEARIKASSSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFA--PLHA--------------------EEEEQFGPFDLENYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGM 207
            + +++  + A  +I+++EA+I+   +      + + +LPWE   E   IL+  LME+IL++S +E+ F   PL +                    ++      F L+ + +V  ++LSLDP L K+HARL  R   E+ FW  YF R A LR+   +
Sbjct:   48 EEINKAIQNAEDDITSKEAKIQQEDAGL--KQAEIKILPWETRIEKMAILSHGLMEKILSLSLEESNFTTPPLESGTKPEEISEDSALQGNGGADDDRNGAAAFQLDRHTSVAIKMLSLDPNLAKIHARLISR-MPERTFWYHYFSRVATLRAEVDL 201          
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|223998220|ref|XP_002288783.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975891|gb|EED94219.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 69.707 bits (169), Expect = 1.802e-10
Identity = 43/143 (30.07%), Postives = 60/143 (41.96%), Query Frame = 0
Query:  105 SLVSLLPWEANDESQEILTQPLMEQILAISHDEATFA-PL----------------------HAEEEEQ-----------------FGPFDLENYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGM 207
            +L  +LPW+  D   EIL     E IL +S  E TF  P                        A++ EQ                    FDL+ +V +I RL  +DP L +MH+RL   G+ E  FW++YF+ CA  R   G+
Sbjct:   62 TLAEILPWDTRDAEMEILVDECKEAILGLSAREETFTGPFVLDGGLPSGEEEGEGEVDSDLKAAKDLEQAEKSAGKLSKLQPLPALLADFDLDTHVGLIQRLFEVDPKLVEMHSRLSSGGKRELTFWKNYFFHCAYTRYEAGL 204          
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|1210524952|dbj|GAX16144.1| (hypothetical protein FisN_3Hh375 [Fistulifera solaris])

HSP 1 Score: 68.9366 bits (167), Expect = 2.229e-10
Identity = 47/137 (34.31%), Postives = 76/137 (55.47%), Query Frame = 0
Query:   70 QAAQALHQVAEKAAQEISAEEARIKASS------SAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDL-ENYVTVITRLLSLDPALEKMHARLGGR-GREEKEFWQSYFYRC 198
            + A  +    +++A  ++AE +R++ S       S  + P +L  ++  + + + QEIL   L E+I+A+S +++TF   HA  +    PF L E  + +I RLL LD  L   HARL GR   +E EFW++YF RC
Sbjct:   62 ETAGGVASFVQRSAMTVAAELSRLEESELTGECESGEIIPLNLPWVIKVDEDSDDQEILV--LKERIMALSREDSTFLRSHATSDSP--PFSLDEPRIQLIRRLLELDENLATSHARLSGRVDVKETEFWKNYFDRC 194          
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|1210531079|dbj|GAX10180.1| (hypothetical protein FisN_3Lh375 [Fistulifera solaris])

HSP 1 Score: 65.855 bits (159), Expect = 2.835e-9
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 0
Query:   70 QAAQALHQVAEKAAQEISAEEARIKAS------SSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDLENYVTVITRLLSLDPALEKMHARLGGR-GREEKEFWQSYFYRC 198
            + A  +    +++A  ++AE +R++ S       S  + P +L  ++  + + + QEIL   L E+I+A+S +++TF   HA  +      D E  + +I RLL LD  L   HARL GR   +E EFW++YF RC
Sbjct:   64 ETAGGVASFVQRSAMTVAAELSRLEESELTGECKSGEIIPLNLPWVIKVDEDSDYQEILV--LKERIMALSREDSTFFGSHATADSPSFSLD-EPRIQLIRRLLELDENLATSHARLSGRVDVKETEFWKNYFDRC 196          
BLAST of EWM24396.1 vs. NCBI_GenBank
Match: gi|1173880836|gb|OQR67530.1| (synapse-associated protein 1-like, partial [Tropilaelaps mercedesae])

HSP 1 Score: 61.2326 bits (147), Expect = 1.084e-7
Identity = 39/112 (34.82%), Postives = 57/112 (50.89%), Query Frame = 0
Query:  110 LPWEANDESQEILTQPLMEQILAISHDEATFA--PLHAEEEEQFGPFDLE-NYVTVITRLLSLDPALEKMHARLGGRGREEKEFWQSYFYRCACLRSGCGMGGNAPGGGGGG 218
            LPW   +  +E     + +QIL++S D+ TF   P +  + E    FDLE  Y  V   +L  DP LEKM   L  +   E +FW++YFYR + ++    +   A  GGG G
Sbjct:   31 LPWAGCENPEE-----MKQQILSLSEDKRTFVRNPPNGVQFE----FDLEGQYAPVAMAMLKEDPRLEKMRFDLVPKLISEADFWRNYFYRVSLVKQSSQLNSLAKSGGGDG 133          
The following BLAST results are available for this feature:
BLAST of EWM24396.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585105798|gb|EWM24396.1|2.587e-164100.00hypothetical protein Naga_100283g3 [Nannochloropsi... [more]
gi|553192318|ref|XP_005855551.1|2.102e-37100.00hypothetical protein NGA_0641800, partial [Nannoch... [more]
gi|298715173|emb|CBJ34007.1|3.123e-1229.30conserved unknown protein [Ectocarpus siliculosus][more]
gi|223998220|ref|XP_002288783.1|1.802e-1030.07predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210524952|dbj|GAX16144.1|2.229e-1034.31hypothetical protein FisN_3Hh375 [Fistulifera sola... [more]
gi|1210531079|dbj|GAX10180.1|2.835e-933.09hypothetical protein FisN_3Lh375 [Fistulifera sola... [more]
gi|1173880836|gb|OQR67530.1|1.084e-734.82synapse-associated protein 1-like, partial [Tropil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6295rna6295Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications