EWM24394.1, cds6279 (CDS) Nannochloropsis gaditana

Overview
NameEWM24394.1
Unique Namecds6279
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:192466..192715 +
Alignment locationCM002468.1:192993..194374 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24394.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100283g4.8476.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:192466..192715 +
CM002468.1supercontigCM002468.1:192993..194374 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24394.1 vs. NCBI_GenBank
Match: gi|585105796|gb|EWM24394.1| (hypothetical protein Naga_100283g4 [Nannochloropsis gaditana])

HSP 1 Score: 1095.11 bits (2831), Expect = 0.000e+0
Identity = 543/543 (100.00%), Postives = 543/543 (100.00%), Query Frame = 0 
Query:    1 MGGEKLNHTNPFRVEPLPQESADEGVASIIATTTRKCPSRCEKREAFLRQALADKQATLVRLHEYEIVVKELAEAIDKITEEKEEIQDKLHAVHHQNRQGNELHLLLDAMMTLGTSRRHSSFGSFSDAPEGRVDATSSRGEAMTARDDLMGIWARGETKEHQEVERELNVLRRRMAKLCRRIRTRQVESERGALHRVHGSDNNESQGAATSASKGTSQDGEHVGMRHEERREEVWHPRSQLPGQEQDQRHHEKPHVLQNEIRDLKDNLQVAQARCASLESAVFAEHGQLEESRGDLREAMERVTELEKQIQRAQESEKAIKEETREEMEALEFTNHDLSREVMTLEASLEEAQQAAESARSELFQLQVGREEAELRTEAEKEKVEELSVIKLALAGQVRRLEEEQRQCTARLSLMEEEVQVWRQRAEDVSEWVGVMCNETEKKEAGTEEVPIPGILAAEGRVQTEEYQTAENVLNVTRASTAEASTATAATMTTPQADSLPLPSIKKTGNAGSNRVEALLQENLALRKTIEGLRGEDTKAKLS 543
            MGGEKLNHTNPFRVEPLPQESADEGVASIIATTTRKCPSRCEKREAFLRQALADKQATLVRLHEYEIVVKELAEAIDKITEEKEEIQDKLHAVHHQNRQGNELHLLLDAMMTLGTSRRHSSFGSFSDAPEGRVDATSSRGEAMTARDDLMGIWARGETKEHQEVERELNVLRRRMAKLCRRIRTRQVESERGALHRVHGSDNNESQGAATSASKGTSQDGEHVGMRHEERREEVWHPRSQLPGQEQDQRHHEKPHVLQNEIRDLKDNLQVAQARCASLESAVFAEHGQLEESRGDLREAMERVTELEKQIQRAQESEKAIKEETREEMEALEFTNHDLSREVMTLEASLEEAQQAAESARSELFQLQVGREEAELRTEAEKEKVEELSVIKLALAGQVRRLEEEQRQCTARLSLMEEEVQVWRQRAEDVSEWVGVMCNETEKKEAGTEEVPIPGILAAEGRVQTEEYQTAENVLNVTRASTAEASTATAATMTTPQADSLPLPSIKKTGNAGSNRVEALLQENLALRKTIEGLRGEDTKAKLS
Sbjct:    1 MGGEKLNHTNPFRVEPLPQESADEGVASIIATTTRKCPSRCEKREAFLRQALADKQATLVRLHEYEIVVKELAEAIDKITEEKEEIQDKLHAVHHQNRQGNELHLLLDAMMTLGTSRRHSSFGSFSDAPEGRVDATSSRGEAMTARDDLMGIWARGETKEHQEVERELNVLRRRMAKLCRRIRTRQVESERGALHRVHGSDNNESQGAATSASKGTSQDGEHVGMRHEERREEVWHPRSQLPGQEQDQRHHEKPHVLQNEIRDLKDNLQVAQARCASLESAVFAEHGQLEESRGDLREAMERVTELEKQIQRAQESEKAIKEETREEMEALEFTNHDLSREVMTLEASLEEAQQAAESARSELFQLQVGREEAELRTEAEKEKVEELSVIKLALAGQVRRLEEEQRQCTARLSLMEEEVQVWRQRAEDVSEWVGVMCNETEKKEAGTEEVPIPGILAAEGRVQTEEYQTAENVLNVTRASTAEASTATAATMTTPQADSLPLPSIKKTGNAGSNRVEALLQENLALRKTIEGLRGEDTKAKLS 543
[Close]
BLAST of EWM24394.1 vs. NCBI_GenBank
Match: gi|553192297|ref|XP_005855546.1| (hypothetical protein NGA_0641200 [Nannochloropsis gaditana CCMP526] >gi|422293512|gb|EKU20812.1| hypothetical protein NGA_0641200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 791.186 bits (2042), Expect = 0.000e+0
Identity = 397/401 (99.00%), Postives = 400/401 (99.75%), Query Frame = 0 
Query:  143 MTARDDLMGIWARGETKEHQEVERELNVLRRRMAKLCRRIRTRQVESERGALHRVHGSDNNESQGAATSASKGTSQDGEHVGMRHEERREEVWHPRSQLPGQEQDQRHHEKPHVLQNEIRDLKDNLQVAQARCASLESAVFAEHGQLEESRGDLREAMERVTELEKQIQRAQESEKAIKEETREEMEALEFTNHDLSREVMTLEASLEEAQQAAESARSELFQLQVGREEAELRTEAEKEKVEELSVIKLALAGQVRRLEEEQRQCTARLSLMEEEVQVWRQRAEDVSEWVGVMCNETEKKEAGTEEVPIPGILAAEGRVQTEEYQTAENVLNVTRASTAEASTATAATMTTPQADSLPLPSIKKTGNAGSNRVEALLQENLALRKTIEGLRGEDTKAKLS 543
            MTARDDLMGIWARGETKEHQEVERELNVLRRRMAKLCRRIRTRQVESERGALHRVHGSDNNESQGAATSAS+GTSQDGEHVGMRHEERREEVWHPRSQLPGQEQDQRHHEKPHVLQNEIRDLKDNLQVAQARCASLESAVFAE GQLEESRGD+REAMERVTELEKQIQRAQESEKAIKEETREEMEALEFTNHDLSREVMTLEASLEEAQQAAESARSELFQLQVGREEAELRTEAEKEKVEELSVIKLALAGQVRRLEEEQRQCTARLSLMEEEVQVWRQRAEDVSEWVGVMCNETEKKEAGTEEVPIPGILAAEGRVQTEEYQTAENVLNVTRASTAEASTATAATMTTPQADSLPLPSIKKTGNAGSNRVEALLQE+LALRKTIEGLRGEDTKAKLS
Sbjct:    1 MTARDDLMGIWARGETKEHQEVERELNVLRRRMAKLCRRIRTRQVESERGALHRVHGSDNNESQGAATSASEGTSQDGEHVGMRHEERREEVWHPRSQLPGQEQDQRHHEKPHVLQNEIRDLKDNLQVAQARCASLESAVFAERGQLEESRGDVREAMERVTELEKQIQRAQESEKAIKEETREEMEALEFTNHDLSREVMTLEASLEEAQQAAESARSELFQLQVGREEAELRTEAEKEKVEELSVIKLALAGQVRRLEEEQRQCTARLSLMEEEVQVWRQRAEDVSEWVGVMCNETEKKEAGTEEVPIPGILAAEGRVQTEEYQTAENVLNVTRASTAEASTATAATMTTPQADSLPLPSIKKTGNAGSNRVEALLQEDLALRKTIEGLRGEDTKAKLS 401
The following BLAST results are available for this feature:
BLAST of EWM24394.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105796|gb|EWM24394.1|0.000e+0100.00hypothetical protein Naga_100283g4 [Nannochloropsi... [more]
gi|553192297|ref|XP_005855546.1|0.000e+099.00hypothetical protein NGA_0641200 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6294rna6294Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications