EWM24393.1, cds6277 (CDS) Nannochloropsis gaditana

Overview
NameEWM24393.1
Unique Namecds6277
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:185944..186193 +
Alignment locationCM002468.1:186361..186866 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24393.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100283g6.8475.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:185944..186193 +
CM002468.1supercontigCM002468.1:186361..186866 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24393.1 vs. NCBI_GenBank
Match: gi|585105795|gb|EWM24393.1| (hypothetical protein Naga_100283g6 [Nannochloropsis gaditana])

HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0 
Query:    1 MRRAGIGRRMGGGGGGGAGWGEEYTLSVEIFDRKGGFRLFCSYGRVSIMHQGVGVEGRWMTKLAVTGFASCWHFSAASRDSVHGRFETIKDYFERAHEPGLEHCLCTEVTAMHKKTGRMAVLYASSKESRRRLAGEKNGTSYFEEELRPAFASSAGVMASTASGSSHPGLPPSLSSFCAPSPGIPYLAASGIAVSKVSTPPSTSSLSPLPAGIPSMDEEKEQKYRVDRLYLIFSTERRWDLPKIFEGLEWT 251
            MRRAGIGRRMGGGGGGGAGWGEEYTLSVEIFDRKGGFRLFCSYGRVSIMHQGVGVEGRWMTKLAVTGFASCWHFSAASRDSVHGRFETIKDYFERAHEPGLEHCLCTEVTAMHKKTGRMAVLYASSKESRRRLAGEKNGTSYFEEELRPAFASSAGVMASTASGSSHPGLPPSLSSFCAPSPGIPYLAASGIAVSKVSTPPSTSSLSPLPAGIPSMDEEKEQKYRVDRLYLIFSTERRWDLPKIFEGLEWT
Sbjct:    1 MRRAGIGRRMGGGGGGGAGWGEEYTLSVEIFDRKGGFRLFCSYGRVSIMHQGVGVEGRWMTKLAVTGFASCWHFSAASRDSVHGRFETIKDYFERAHEPGLEHCLCTEVTAMHKKTGRMAVLYASSKESRRRLAGEKNGTSYFEEELRPAFASSAGVMASTASGSSHPGLPPSLSSFCAPSPGIPYLAASGIAVSKVSTPPSTSSLSPLPAGIPSMDEEKEQKYRVDRLYLIFSTERRWDLPKIFEGLEWT 251
[Close]
BLAST of EWM24393.1 vs. NCBI_GenBank
Match: gi|585103262|gb|EWM22694.1| (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])

HSP 1 Score: 61.6178 bits (148), Expect = 2.541e-7
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 0 
Query:   17 GAGWGEEYTLSVEIFDRKGGFRLFCSYG--RVSIMHQGVGVEGRW--MTKLAVTGFASCWHFSAASRDSVHGRFETIKDYFERAHEPGLEHCLCTEVTAMHKKTGRMAVLYASSKES 129
            G    + ++LS E++D   G R+  + G  RV +  QG     R     +  V G A    FSAASRD +  RF +++DYF R H P     L   VT   ++TGRMA+L+++ K++
Sbjct:  279 GEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPA----FSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDA 391
The following BLAST results are available for this feature:
BLAST of EWM24393.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105795|gb|EWM24393.1|0.000e+0100.00hypothetical protein Naga_100283g6 [Nannochloropsi... [more]
gi|585103262|gb|EWM22694.1|2.541e-735.04hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6292rna6292Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications