EWM24407.1, cds6265 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|585105818|gb|EWM24407.1| (kef-type k+ transport systems -binding component [Nannochloropsis gaditana]) HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0 Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0 Query: 1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVLEERKKEEQLLKAEREREEEARKARGDTGTGLMALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 311 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVLEERKKEEQLLKAEREREEEARKARGDTGTGLMALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD Sbjct: 1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVLEERKKEEQLLKAEREREEEARKARGDTGTGLMALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 311
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|585105819|gb|EWM24408.1| (kef-type k+ transport systems -binding component [Nannochloropsis gaditana]) HSP 1 Score: 461.07 bits (1185), Expect = 1.168e-162 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0 Query: 84 MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 311 MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD Sbjct: 1 MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 228
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|597758161|ref|XP_007240797.1| (PREDICTED: potassium voltage-gated channel subfamily F member 1 [Astyanax mexicanus]) HSP 1 Score: 66.2402 bits (160), Expect = 1.539e-8 Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 0 Query: 1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYF--RVLEERKKEEQLLKAEREREEEARKARGDTGT 81 +T TTVG+GD YP +TLGR A V+ G+V IALP I +F+ Y R LE K E L A R +EEE R+ +G T Sbjct: 373 ITMTTVGYGDVYPKTTLGRCNAAVSFLCGVVAIALPIHPIINNFVTFYNKQRALESAAKHEIELMALRSQEEEKREGKGQRAT 455
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|255085925|ref|XP_002508929.1| (voltage-gated ion channel superfamily [Micromonas commoda] >gi|226524207|gb|ACO70187.1| voltage-gated ion channel superfamily [Micromonas commoda]) HSP 1 Score: 65.0846 bits (157), Expect = 4.362e-8 Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 0 Query: 1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVLEERKKEEQLLKAEREREEEAR 73 +T TTVG+GD YP + +GR VA++ +GIV +A+P T+IG +F++ E RK + LK +R +E A+ Sbjct: 296 VTMTTVGYGDMYPITLIGRIVAVITMLSGIVVLAMPITLIGSNFVE------EYRKSQANELKEKRRKESNAK 362
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|303287769|ref|XP_003063173.1| (voltage-gated ion channel superfamily [Micromonas pusilla CCMP1545] >gi|226455005|gb|EEH52309.1| voltage-gated ion channel superfamily [Micromonas pusilla CCMP1545]) HSP 1 Score: 64.6994 bits (156), Expect = 5.870e-8 Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 0 Query: 1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRV----LEERKKEEQLLKAERE 67 +T TTVG+GD +P + GRF+A++ + GI+ IA+P T+IG +F+D Y + E+K+ E L KA+ E Sbjct: 304 VTMTTVGYGDMFPITLYGRFIAVLTLFAGIIVIAMPITLIGSNFVDEYRKSQMAQWREKKRLEALAKAKEE 374
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|966648727|gb|KTF83637.1| (hypothetical protein cypCar_00030994 [Cyprinus carpio]) HSP 1 Score: 62.003 bits (149), Expect = 1.173e-7 Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 0 Query: 1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYF--RVLEERKKEEQLLKAEREREE 70 +T TTVG+GD YP +TLGR A V+ G++ IALP I +F+ VY RVLE K E L A R +EE Sbjct: 103 ITMTTVGYGDIYPKTTLGRCNAAVSFLCGVIAIALPIHPIINNFVIVYSKQRVLETAAKHEIELMALRAKEE 174
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|130492250|ref|NP_001076280.1| (potassium voltage-gated channel, subfamily F, member 1a [Danio rerio] >gi|1207154344|ref|XP_021324115.1| potassium voltage-gated channel, subfamily F, member 1a isoform X1 [Danio rerio] >gi|190337496|gb|AAI63435.1| Potassium voltage-gated channel, subfamily F, member 1 [Danio rerio] >gi|190339860|gb|AAI63424.1| Potassium voltage-gated channel, subfamily F, member 1 [Danio rerio]) HSP 1 Score: 62.3882 bits (150), Expect = 2.663e-7 Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 0 Query: 1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYF--RVLEERKKEEQLLKAEREREE 70 +T TTVG+GD YP +TLGR A V+ G++ IALP I +F+ VY RVLE K E L A R REE Sbjct: 369 ITMTTVGYGDIYPKTTLGRCNAAVSFLCGVIAIALPIHPIINNFVIVYSKQRVLETAAKHEIELMALRAREE 440
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|88976032|gb|ABD59027.1| (voltage-gated potassium channel [Physalia physalis]) HSP 1 Score: 62.003 bits (149), Expect = 3.534e-7 Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 0 Query: 1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVLEERKKEEQLLKAEREREEEARKARGDTGTGLMALLCCRRRRR 94 +T TTVG+GD YPT+ LG+ + VA G++ IALP ++ +F Y + RK EE ++ E E++ E RK+ + + + CR+ R+ Sbjct: 364 VTMTTVGYGDMYPTTLLGKLIGFVAVVCGVLTIALPVPVVVSNFEYFYTKERNRRKTEE--VRKEHEKQLEERKS----SSNMFRKMICRKSRK 451
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|669315461|gb|KFD58908.1| (hypothetical protein M513_00071, partial [Trichuris suis] >gi|669332772|gb|KFD72936.1| hypothetical protein M514_00071, partial [Trichuris suis]) HSP 1 Score: 62.3882 bits (150), Expect = 3.802e-7 Identity = 62/179 (34.64%), Postives = 84/179 (46.93%), Query Frame = 0 Query: 1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRV---LEERKKEEQLLKAEREREEEARKARGDTGTGLMALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALV 176 +T TTVG+GD P + LG V + A TG++ IALP +I +F Y + KK ++L E+ R + RKA GD GTGL+ VPG G RE +G E L GGL EA+ S SPR RD + +R A+ L ++E K + LV Sbjct: 489 VTMTTVGYGDMTPKTYLGMIVGSLCALTGVLTIALPVPVIVSNFAMFYSHTQARAKLPKKRRRVLPLEQARMQTRRKAIGD-GTGLLY-----------GRVPG--GQRESKGILSLKGQLEQCILAGGLD-EAEPILS-SPR---RDRHSQRVIANAKSTLYAFNSVSEAKPTQVKLV 648
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|1207908327|ref|XP_021361729.1| (potassium voltage-gated channel protein egl-36-like [Mizuhopecten yessoensis] >gi|1207908329|ref|XP_021361737.1| potassium voltage-gated channel protein egl-36-like [Mizuhopecten yessoensis] >gi|1207908331|ref|XP_021361746.1| potassium voltage-gated channel protein egl-36-like [Mizuhopecten yessoensis]) HSP 1 Score: 61.2326 bits (147), Expect = 6.868e-7 Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0 Query: 1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVL------EERKKEEQLLKAEREREEEAR 73 +T TTVG+GD YPTST+GR VA + A TG+ +A+P II K+F +Y R+L +E++K ++ +K +AR Sbjct: 349 ITMTTVGYGDVYPTSTVGRIVASLCAMTGLFLLAMPIGIISKNFTYLYTRLLHREHHCKEKRKFKKTIKFTSLPNGDAR 427 The following BLAST results are available for this feature:
BLAST of EWM24407.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|