EWM24437.1, cds6237 (CDS) Nannochloropsis gaditana

Overview
NameEWM24437.1
Unique Namecds6237
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:91983..92498 +
Alignment locationCM002468.1:92777..93478 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24437.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101033g1.4765.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:91983..92498 +
CM002468.1supercontigCM002468.1:92777..93478 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24437.1 vs. NCBI_GenBank
Match: gi|585105880|gb|EWM24437.1| (hypothetical protein Naga_101033g1 [Nannochloropsis gaditana])

HSP 1 Score: 798.505 bits (2061), Expect = 0.000e+0
Identity = 405/405 (100.00%), Postives = 405/405 (100.00%), Query Frame = 0 
Query:    1 MIVCLAGPQNSNFSVVHSANLFKCLVGPFLPPMEVVPSRRGTAQIAVEIEEEEEAICVQKALGASLSLLHVMRQKQKPSRRPEAEGWRDHSVRYVSPSSMPESSSPSHLDATVLSRSAGFQALRVCLEEILTLPMALEREREGLVATERAFVDGMGPFAAPEGVNKSGNDTKPDVPQPFSLAPSLFEAASTASPTPSESSHSGMDLSPPPASTCKRRRRMWSYHPEAGADGAQEKAGKREGGRGGRREGLLRRSLSAGSLHVLDTEEVETRNVEEEGREEVKEELSRPPPHCALPALPKSHAQTHTASCLTPSPPPPPSLPAIPSPPRPTCSASPSTSSSSGTLLPPAFVPALPPSLFPPPSLRDPLPARPAVPDHPLACLQGLEGPRPRTSLLAPHPQSGTSRG 405
            MIVCLAGPQNSNFSVVHSANLFKCLVGPFLPPMEVVPSRRGTAQIAVEIEEEEEAICVQKALGASLSLLHVMRQKQKPSRRPEAEGWRDHSVRYVSPSSMPESSSPSHLDATVLSRSAGFQALRVCLEEILTLPMALEREREGLVATERAFVDGMGPFAAPEGVNKSGNDTKPDVPQPFSLAPSLFEAASTASPTPSESSHSGMDLSPPPASTCKRRRRMWSYHPEAGADGAQEKAGKREGGRGGRREGLLRRSLSAGSLHVLDTEEVETRNVEEEGREEVKEELSRPPPHCALPALPKSHAQTHTASCLTPSPPPPPSLPAIPSPPRPTCSASPSTSSSSGTLLPPAFVPALPPSLFPPPSLRDPLPARPAVPDHPLACLQGLEGPRPRTSLLAPHPQSGTSRG
Sbjct:    1 MIVCLAGPQNSNFSVVHSANLFKCLVGPFLPPMEVVPSRRGTAQIAVEIEEEEEAICVQKALGASLSLLHVMRQKQKPSRRPEAEGWRDHSVRYVSPSSMPESSSPSHLDATVLSRSAGFQALRVCLEEILTLPMALEREREGLVATERAFVDGMGPFAAPEGVNKSGNDTKPDVPQPFSLAPSLFEAASTASPTPSESSHSGMDLSPPPASTCKRRRRMWSYHPEAGADGAQEKAGKREGGRGGRREGLLRRSLSAGSLHVLDTEEVETRNVEEEGREEVKEELSRPPPHCALPALPKSHAQTHTASCLTPSPPPPPSLPAIPSPPRPTCSASPSTSSSSGTLLPPAFVPALPPSLFPPPSLRDPLPARPAVPDHPLACLQGLEGPRPRTSLLAPHPQSGTSRG 405
[Close]
BLAST of EWM24437.1 vs. NCBI_GenBank
Match: gi|553189938|ref|XP_005855105.1| (hypothetical protein NGA_0399600 [Nannochloropsis gaditana CCMP526] >gi|422293961|gb|EKU21261.1| hypothetical protein NGA_0399600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 279.256 bits (713), Expect = 1.079e-90
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0 
Query:   33 MEVVPSRRGTAQIAVEIEEEEEAICVQKALGASLSLLHVMRQKQKPSRRPEAEGWRDHSVRYVSPSSMPESSSPSHLDATVLSRSAGFQALRVCLEEILTLPMALEREREGLVATERAFVDGMGPFAAPEGVNKSGNDTK 172
            MEVVPSRRGTAQIAVEIEEEEEAICVQKALGASLSLLHVMRQKQKPSRRPEAEGWRDHSVRYVSPSSMPESSSPSHLDATVLSRSAGFQALRVCLEEILTLPMALEREREGLVATERAF DGMGPFAAPEGVNKSG DTK
Sbjct:    1 MEVVPSRRGTAQIAVEIEEEEEAICVQKALGASLSLLHVMRQKQKPSRRPEAEGWRDHSVRYVSPSSMPESSSPSHLDATVLSRSAGFQALRVCLEEILTLPMALEREREGLVATERAFKDGMGPFAAPEGVNKSGKDTK 140
The following BLAST results are available for this feature:
BLAST of EWM24437.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105880|gb|EWM24437.1|0.000e+0100.00hypothetical protein Naga_101033g1 [Nannochloropsi... [more]
gi|553189938|ref|XP_005855105.1|1.079e-9098.57hypothetical protein NGA_0399600 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6252rna6252Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications