EWM24445.1, cds6229 (CDS) Nannochloropsis gaditana

Overview
NameEWM24445.1
Unique Namecds6229
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:68164..68220 -
Alignment locationCM002468.1:67971..68066 -
Alignment locationCM002468.1:67511..67617 -
Alignment locationCM002468.1:67033..67354 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24445.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100820g1.5792.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:68164..68220 -
CM002468.1supercontigCM002468.1:67971..68066 -
CM002468.1supercontigCM002468.1:67511..67617 -
CM002468.1supercontigCM002468.1:67033..67354 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromodomain-like
Homology
[Close]
BLAST of EWM24445.1 vs. NCBI_GenBank
Match: gi|585105897|gb|EWM24445.1| (hypothetical protein Naga_100820g1 [Nannochloropsis gaditana])

HSP 1 Score: 372.859 bits (956), Expect = 2.102e-130
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 
Query:    1 MPQVWYEGKIIEREDDVVKVHFHKWPSKYDEWIPLRAKRFAPHKCFTAVTKDFIKRKRAERRDGEEDEEEDEEEDEAQKQQEEEEESEEEPGRRRKRRCVKRKEEAKEEFMRAKQERREKKRARESSKKNDEGRAEERGECGWEGRREGGKEGGLASDGNGWGTSNGDGSREEDKRLDKKQGEDSVGVDDDAE 193
            MPQVWYEGKIIEREDDVVKVHFHKWPSKYDEWIPLRAKRFAPHKCFTAVTKDFIKRKRAERRDGEEDEEEDEEEDEAQKQQEEEEESEEEPGRRRKRRCVKRKEEAKEEFMRAKQERREKKRARESSKKNDEGRAEERGECGWEGRREGGKEGGLASDGNGWGTSNGDGSREEDKRLDKKQGEDSVGVDDDAE
Sbjct:    1 MPQVWYEGKIIEREDDVVKVHFHKWPSKYDEWIPLRAKRFAPHKCFTAVTKDFIKRKRAERRDGEEDEEEDEEEDEAQKQQEEEEESEEEPGRRRKRRCVKRKEEAKEEFMRAKQERREKKRARESSKKNDEGRAEERGECGWEGRREGGKEGGLASDGNGWGTSNGDGSREEDKRLDKKQGEDSVGVDDDAE 193
The following BLAST results are available for this feature:
BLAST of EWM24445.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105897|gb|EWM24445.1|2.102e-130100.00hypothetical protein Naga_100820g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6244rna6244Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications