EWM24454.1, cds6219 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|585105910|gb|EWM24454.1| (dynamin GTPase family protein [Nannochloropsis gaditana]) HSP 1 Score: 419.468 bits (1077), Expect = 1.652e-148 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 Query: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPEGEQGALRDGGERLDEGFEGPAPKLCHAQDQRARQADAPLASTCLYNRVLEGADADIYGPGEDAGAPPS 203 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPEGEQGALRDGGERLDEGFEGPAPKLCHAQDQRARQADAPLASTCLYNRVLEGADADIYGPGEDAGAPPS Sbjct: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPEGEQGALRDGGERLDEGFEGPAPKLCHAQDQRARQADAPLASTCLYNRVLEGADADIYGPGEDAGAPPS 203
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|298713481|emb|CBJ27036.1| (RME1, RME-1/EHD family ATPase with a C-terminal EH domain [Ectocarpus siliculosus]) HSP 1 Score: 236.113 bits (601), Expect = 1.894e-71 Identity = 109/135 (80.74%), Postives = 121/135 (89.63%), Query Frame = 0 Query: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135 + V+ NLP+RGLDRFGVSFLN+FE S PS VLRNI IVDTPGVL+G KQ V+RGYDF NVC WFAERADLILLLFDAHKLDISDEFK VIE+L+G DDKIR +LNKADQVDRQKLMRVYGALMWSMGK+++TPE Sbjct: 106 LTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPE 240
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|635369666|emb|CCI42136.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 216.468 bits (550), Expect = 3.536e-64 Identity = 97/135 (71.85%), Postives = 116/135 (85.93%), Query Frame = 0 Query: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135 +AV+ +LP+ GL FG +FLN+FE + PS+VL NI ++DTPG+L+G KQ + RGYDF V WFAER+DLILLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNKADQ+DRQ+LMRVYGALMWSMGKV+KTPE Sbjct: 137 VAVSPDLPYGGLSMFGTAFLNKFEAAQLPSKVLENITVIDTPGILSGEKQRIQRGYDFVQVARWFAERSDLILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKADQIDRQRLMRVYGALMWSMGKVLKTPE 271
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|224009007|ref|XP_002293462.1| (receptor mediated endocytosis protein-like protein [Thalassiosira pseudonana CCMP1335] >gi|220970862|gb|EED89198.1| receptor mediated endocytosis protein-like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 216.083 bits (549), Expect = 4.854e-64 Identity = 96/135 (71.11%), Postives = 117/135 (86.67%), Query Frame = 0 Query: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135 ++V +LPFRGL+RFGVSFL+RFEGS PS VLR++ +VDTPG+L+G KQ V RGYDFT V WFAERADLILLLFDAHKLDISDE K I+ L+GH+DKIRC+LNKADQ++RQ+LMRVYGAL+WS+GK + +PE Sbjct: 109 LSVHPDLPFRGLERFGVSFLSRFEGSQLPSSVLRSVTLVDTPGILSGEKQRVNRGYDFTKVVAWFAERADLILLLFDAHKLDISDELKSTIDVLKGHEDKIRCILNKADQINRQQLMRVYGALLWSLGKTINSPE 243
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|1173952731|gb|OQS00333.1| (hypothetical protein THRCLA_06008 [Thraustotheca clavata]) HSP 1 Score: 213.001 bits (541), Expect = 4.317e-63 Identity = 95/135 (70.37%), Postives = 115/135 (85.19%), Query Frame = 0 Query: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135 +AV+ +LP+ GL FG SFLN+FE S P + L ++ ++DTPG+L+G KQ ++RGYDF V WFAERAD+ILLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE Sbjct: 108 LAVSPDLPYGGLSMFGTSFLNKFEASQLPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 242
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|813164772|ref|XP_012203446.1| (hypothetical protein SPRG_08827 [Saprolegnia parasitica CBS 223.65] >gi|641531831|gb|KDO25885.1| hypothetical protein SPRG_08827 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 212.616 bits (540), Expect = 5.401e-63 Identity = 95/135 (70.37%), Postives = 115/135 (85.19%), Query Frame = 0 Query: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135 +AV+ +LP+ GL FG SFLN+FE S P + L ++ ++DTPG+L+G KQ ++RGYDF V WFAERAD+ILLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE Sbjct: 108 LAVSPDLPYGGLSMFGTSFLNKFEASQVPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 242
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|1173948977|gb|OQR97055.1| (hypothetical protein ACHHYP_12745 [Achlya hypogyna]) HSP 1 Score: 212.231 bits (539), Expect = 6.267e-63 Identity = 95/135 (70.37%), Postives = 115/135 (85.19%), Query Frame = 0 Query: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135 +AV+ +LP+ GL FG SFLN+FE S P + L ++ ++DTPG+L+G KQ ++RGYDF V WFAERAD+ILLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE Sbjct: 107 LAVSPDLPYGGLSMFGTSFLNKFEASQVPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 241
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|673032408|ref|XP_008870165.1| (hypothetical protein H310_06767 [Aphanomyces invadans] >gi|574474165|gb|ETW01167.1| hypothetical protein H310_06767 [Aphanomyces invadans]) HSP 1 Score: 211.846 bits (538), Expect = 8.065e-63 Identity = 94/135 (69.63%), Postives = 115/135 (85.19%), Query Frame = 0 Query: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135 +AV+ +LP+ GL FG SFLN+FE S P + L ++ ++DTPG+L+G KQ ++RGYDF V WFAERAD++LLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE Sbjct: 108 LAVSPDLPYGGLSMFGTSFLNKFEASQLPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMVLLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 242
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|669164896|ref|XP_008618010.1| (hypothetical protein SDRG_13692 [Saprolegnia diclina VS20] >gi|530730371|gb|EQC28613.1| hypothetical protein SDRG_13692 [Saprolegnia diclina VS20]) HSP 1 Score: 212.616 bits (540), Expect = 9.080e-63 Identity = 95/135 (70.37%), Postives = 115/135 (85.19%), Query Frame = 0 Query: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135 +AV+ +LP+ GL FG SFLN+FE S P + L ++ ++DTPG+L+G KQ ++RGYDF V WFAERAD+ILLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE Sbjct: 136 LAVSPDLPYGGLSMFGTSFLNKFEASQVPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 270
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|698779767|ref|XP_009822927.1| (hypothetical protein H257_01428 [Aphanomyces astaci] >gi|574122588|gb|ETV88064.1| hypothetical protein H257_01428 [Aphanomyces astaci]) HSP 1 Score: 211.846 bits (538), Expect = 9.773e-63 Identity = 94/135 (69.63%), Postives = 115/135 (85.19%), Query Frame = 0 Query: 1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135 +AV+ +LP+ GL FG SFLN+FE S P + L ++ ++DTPG+L+G KQ ++RGYDF V WFAERAD++LLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE Sbjct: 108 LAVSPDLPYGGLSMFGTSFLNKFEASQLPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMVLLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 242 The following BLAST results are available for this feature:
BLAST of EWM24454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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