EWM24454.1, cds6219 (CDS) Nannochloropsis gaditana

Overview
NameEWM24454.1
Unique Namecds6219
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:49357..49428 -
Alignment locationCM002468.1:49135..49226 -
Alignment locationCM002468.1:48845..48944 -
Alignment locationCM002468.1:48577..48642 -
Alignment locationCM002468.1:48401..48457 -
Alignment locationCM002468.1:48179..48196 -
Alignment locationCM002468.1:48063..48128 -
Alignment locationCM002468.1:47752..47875 -
Alignment locationCM002468.1:47480..47496 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24454.1
Productdynamin GTPase family protein
Orig transcript idgnl|cribi|Naga_101589g1.5286.mrna
GeneRME1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:49357..49428 -
CM002468.1supercontigCM002468.1:49135..49226 -
CM002468.1supercontigCM002468.1:48845..48944 -
CM002468.1supercontigCM002468.1:48577..48642 -
CM002468.1supercontigCM002468.1:48401..48457 -
CM002468.1supercontigCM002468.1:48179..48196 -
CM002468.1supercontigCM002468.1:48063..48128 -
CM002468.1supercontigCM002468.1:47752..47875 -
CM002468.1supercontigCM002468.1:47480..47496 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|585105910|gb|EWM24454.1| (dynamin GTPase family protein [Nannochloropsis gaditana])

HSP 1 Score: 419.468 bits (1077), Expect = 1.652e-148
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
Query:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPEGEQGALRDGGERLDEGFEGPAPKLCHAQDQRARQADAPLASTCLYNRVLEGADADIYGPGEDAGAPPS 203
            MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPEGEQGALRDGGERLDEGFEGPAPKLCHAQDQRARQADAPLASTCLYNRVLEGADADIYGPGEDAGAPPS
Sbjct:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPEGEQGALRDGGERLDEGFEGPAPKLCHAQDQRARQADAPLASTCLYNRVLEGADADIYGPGEDAGAPPS 203          
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|298713481|emb|CBJ27036.1| (RME1, RME-1/EHD family ATPase with a C-terminal EH domain [Ectocarpus siliculosus])

HSP 1 Score: 236.113 bits (601), Expect = 1.894e-71
Identity = 109/135 (80.74%), Postives = 121/135 (89.63%), Query Frame = 0
Query:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135
            + V+ NLP+RGLDRFGVSFLN+FE S  PS VLRNI IVDTPGVL+G KQ V+RGYDF NVC WFAERADLILLLFDAHKLDISDEFK VIE+L+G DDKIR +LNKADQVDRQKLMRVYGALMWSMGK+++TPE
Sbjct:  106 LTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTPGVLSGEKQRVSRGYDFVNVCHWFAERADLILLLFDAHKLDISDEFKAVIERLKGQDDKIRVILNKADQVDRQKLMRVYGALMWSMGKIIRTPE 240          
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|635369666|emb|CCI42136.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 216.468 bits (550), Expect = 3.536e-64
Identity = 97/135 (71.85%), Postives = 116/135 (85.93%), Query Frame = 0
Query:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135
            +AV+ +LP+ GL  FG +FLN+FE +  PS+VL NI ++DTPG+L+G KQ + RGYDF  V  WFAER+DLILLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNKADQ+DRQ+LMRVYGALMWSMGKV+KTPE
Sbjct:  137 VAVSPDLPYGGLSMFGTAFLNKFEAAQLPSKVLENITVIDTPGILSGEKQRIQRGYDFVQVARWFAERSDLILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKADQIDRQRLMRVYGALMWSMGKVLKTPE 271          
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|224009007|ref|XP_002293462.1| (receptor mediated endocytosis protein-like protein [Thalassiosira pseudonana CCMP1335] >gi|220970862|gb|EED89198.1| receptor mediated endocytosis protein-like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 216.083 bits (549), Expect = 4.854e-64
Identity = 96/135 (71.11%), Postives = 117/135 (86.67%), Query Frame = 0
Query:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135
            ++V  +LPFRGL+RFGVSFL+RFEGS  PS VLR++ +VDTPG+L+G KQ V RGYDFT V  WFAERADLILLLFDAHKLDISDE K  I+ L+GH+DKIRC+LNKADQ++RQ+LMRVYGAL+WS+GK + +PE
Sbjct:  109 LSVHPDLPFRGLERFGVSFLSRFEGSQLPSSVLRSVTLVDTPGILSGEKQRVNRGYDFTKVVAWFAERADLILLLFDAHKLDISDELKSTIDVLKGHEDKIRCILNKADQINRQQLMRVYGALLWSLGKTINSPE 243          
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|1173952731|gb|OQS00333.1| (hypothetical protein THRCLA_06008 [Thraustotheca clavata])

HSP 1 Score: 213.001 bits (541), Expect = 4.317e-63
Identity = 95/135 (70.37%), Postives = 115/135 (85.19%), Query Frame = 0
Query:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135
            +AV+ +LP+ GL  FG SFLN+FE S  P + L ++ ++DTPG+L+G KQ ++RGYDF  V  WFAERAD+ILLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE
Sbjct:  108 LAVSPDLPYGGLSMFGTSFLNKFEASQLPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 242          
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|813164772|ref|XP_012203446.1| (hypothetical protein SPRG_08827 [Saprolegnia parasitica CBS 223.65] >gi|641531831|gb|KDO25885.1| hypothetical protein SPRG_08827 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 212.616 bits (540), Expect = 5.401e-63
Identity = 95/135 (70.37%), Postives = 115/135 (85.19%), Query Frame = 0
Query:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135
            +AV+ +LP+ GL  FG SFLN+FE S  P + L ++ ++DTPG+L+G KQ ++RGYDF  V  WFAERAD+ILLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE
Sbjct:  108 LAVSPDLPYGGLSMFGTSFLNKFEASQVPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 242          
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|1173948977|gb|OQR97055.1| (hypothetical protein ACHHYP_12745 [Achlya hypogyna])

HSP 1 Score: 212.231 bits (539), Expect = 6.267e-63
Identity = 95/135 (70.37%), Postives = 115/135 (85.19%), Query Frame = 0
Query:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135
            +AV+ +LP+ GL  FG SFLN+FE S  P + L ++ ++DTPG+L+G KQ ++RGYDF  V  WFAERAD+ILLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE
Sbjct:  107 LAVSPDLPYGGLSMFGTSFLNKFEASQVPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 241          
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|673032408|ref|XP_008870165.1| (hypothetical protein H310_06767 [Aphanomyces invadans] >gi|574474165|gb|ETW01167.1| hypothetical protein H310_06767 [Aphanomyces invadans])

HSP 1 Score: 211.846 bits (538), Expect = 8.065e-63
Identity = 94/135 (69.63%), Postives = 115/135 (85.19%), Query Frame = 0
Query:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135
            +AV+ +LP+ GL  FG SFLN+FE S  P + L ++ ++DTPG+L+G KQ ++RGYDF  V  WFAERAD++LLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE
Sbjct:  108 LAVSPDLPYGGLSMFGTSFLNKFEASQLPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMVLLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 242          
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|669164896|ref|XP_008618010.1| (hypothetical protein SDRG_13692 [Saprolegnia diclina VS20] >gi|530730371|gb|EQC28613.1| hypothetical protein SDRG_13692 [Saprolegnia diclina VS20])

HSP 1 Score: 212.616 bits (540), Expect = 9.080e-63
Identity = 95/135 (70.37%), Postives = 115/135 (85.19%), Query Frame = 0
Query:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135
            +AV+ +LP+ GL  FG SFLN+FE S  P + L ++ ++DTPG+L+G KQ ++RGYDF  V  WFAERAD+ILLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE
Sbjct:  136 LAVSPDLPYGGLSMFGTSFLNKFEASQVPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMILLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 270          
BLAST of EWM24454.1 vs. NCBI_GenBank
Match: gi|698779767|ref|XP_009822927.1| (hypothetical protein H257_01428 [Aphanomyces astaci] >gi|574122588|gb|ETV88064.1| hypothetical protein H257_01428 [Aphanomyces astaci])

HSP 1 Score: 211.846 bits (538), Expect = 9.773e-63
Identity = 94/135 (69.63%), Postives = 115/135 (85.19%), Query Frame = 0
Query:    1 MAVAGNLPFRGLDRFGVSFLNRFEGSVCPSEVLRNIHIVDTPGVLAGNKQTVARGYDFTNVCGWFAERADLILLLFDAHKLDISDEFKEVIEKLRGHDDKIRCVLNKADQVDRQKLMRVYGALMWSMGKVMKTPE 135
            +AV+ +LP+ GL  FG SFLN+FE S  P + L ++ ++DTPG+L+G KQ ++RGYDF  V  WFAERAD++LLLFDAHKLDISDEF+ VIE L+GHDDKIRCVLNK+DQ+D+QKLMRVYGALMWSMGKVMKTPE
Sbjct:  108 LAVSPDLPYGGLSMFGTSFLNKFEASQLPCKQLEHMTVIDTPGILSGEKQRISRGYDFVQVAKWFAERADMVLLLFDAHKLDISDEFQRVIEVLKGHDDKIRCVLNKSDQIDQQKLMRVYGALMWSMGKVMKTPE 242          
The following BLAST results are available for this feature:
BLAST of EWM24454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105910|gb|EWM24454.1|1.652e-148100.00dynamin GTPase family protein [Nannochloropsis gad... [more]
gi|298713481|emb|CBJ27036.1|1.894e-7180.74RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
gi|635369666|emb|CCI42136.1|3.536e-6471.85unnamed protein product [Albugo candida][more]
gi|224009007|ref|XP_002293462.1|4.854e-6471.11receptor mediated endocytosis protein-like protein... [more]
gi|1173952731|gb|OQS00333.1|4.317e-6370.37hypothetical protein THRCLA_06008 [Thraustotheca c... [more]
gi|813164772|ref|XP_012203446.1|5.401e-6370.37hypothetical protein SPRG_08827 [Saprolegnia paras... [more]
gi|1173948977|gb|OQR97055.1|6.267e-6370.37hypothetical protein ACHHYP_12745 [Achlya hypogyna... [more]
gi|673032408|ref|XP_008870165.1|8.065e-6369.63hypothetical protein H310_06767 [Aphanomyces invad... [more]
gi|669164896|ref|XP_008618010.1|9.080e-6370.37hypothetical protein SDRG_13692 [Saprolegnia dicli... [more]
gi|698779767|ref|XP_009822927.1|9.773e-6369.63hypothetical protein H257_01428 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6234rna6234Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications