EWM24485.1, cds6190 (CDS) Nannochloropsis gaditana

Overview
NameEWM24485.1
Unique Namecds6190
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:835671..835704 -
Alignment locationCM002467.1:835468..835534 -
Alignment locationCM002467.1:835246..835354 -
Alignment locationCM002467.1:834587..834895 -
Alignment locationCM002467.1:834295..834376 -
Alignment locationCM002467.1:834082..834221 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24485.1
ProductMog1/PsbP/DUF1795, alpha/beta/alpha sandwich
Orig transcript idgnl|cribi|Naga_100662g3.4388.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:835671..835704 -
CM002467.1supercontigCM002467.1:835468..835534 -
CM002467.1supercontigCM002467.1:835246..835354 -
CM002467.1supercontigCM002467.1:834587..834895 -
CM002467.1supercontigCM002467.1:834295..834376 -
CM002467.1supercontigCM002467.1:834082..834221 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007681Mog1
IPR016123Mog1/PsbP_a/b/a-sand
Homology
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|585105959|gb|EWM24485.1| (Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich [Nannochloropsis gaditana])

HSP 1 Score: 502.671 bits (1293), Expect = 4.509e-180
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 MTRKEKSISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLFGGAIRIRESVQHEYTHITARQDGVGWAFSIRLLKVSNNALIKSREA 246
            MTRKEKSISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLFGGAIRIRESVQHEYTHITARQDGVGWAFSIRLLKVSNNALIKSREA
Sbjct:    1 MTRKEKSISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLFGGAIRIRESVQHEYTHITARQDGVGWAFSIRLLKVSNNALIKSREA 246          
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|698518347|ref|XP_009804047.1| (PREDICTED: ran guanine nucleotide release factor isoform X1 [Nicotiana sylvestris] >gi|1025280038|ref|XP_016495375.1| PREDICTED: ran guanine nucleotide release factor-like [Nicotiana tabacum])

HSP 1 Score: 118.627 bits (296), Expect = 2.279e-29
Identity = 81/209 (38.76%), Postives = 113/209 (54.07%), Query Frame = 0
Query:    5 EKSISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYAL----VGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQ--APAAASFNAAMFVKGNVCPDSGMAALQE----ALASLTIRNWGLFGGA 203
            E S +E+    ALFGGAI+ + P  F   S++RQVPD+QEVF+D   D SLI+ELLDL+ D     +AT+F  DLA   DA+ ATI  +   S     P L    T A+    VG   VSK      A   V++YL N+RL++ GTD+L+T   P L    +  A++  A + V       SG+  + E    A++S  + +W LFG A
Sbjct:    3 EDSCTER----ALFGGAISSTFPLRFQDVSNVRQVPDHQEVFVDPGRDESLIIELLDLKLDVADSGSATWFLQDLANEQDAEGATIIEQ---SAVFEAPGLCYRNTPAVISTAVGQMAVSKGRQGREAQNLVKVYLANLRLKEVGTDILITAYEPLLINPLSETASTVGAGIAVPAA---QSGIMPMAEVFKLAVSSFKVHDWSLFGTA 201          
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|1111037618|ref|XP_019225620.1| (PREDICTED: ran guanine nucleotide release factor-like [Nicotiana attenuata] >gi|1102285609|gb|OIT32539.1| hypothetical protein A4A49_66090 [Nicotiana attenuata])

HSP 1 Score: 118.242 bits (295), Expect = 3.457e-29
Identity = 79/199 (39.70%), Postives = 109/199 (54.77%), Query Frame = 0
Query:   15 HALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYAL----VGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQ--APAAASFNAAMFVKGNVCPDSGMAALQE----ALASLTIRNWGLFGGA 203
             ALFGGAI+ + P  F   S++RQVPD+QEVF+D   D SLI+ELLDL+ D     +AT+F  DLA   DA+ ATI  +   S     P L    T A+    VG   VSK      A   V++YL N+RL++ GTD+L+T   P L    + +A+S  A + V       SG+  + E    A++S  + +W LFG A
Sbjct:    9 RALFGGAISSTFPLRFQDVSNVRQVPDHQEVFVDLGRDESLIIELLDLKLDVADSGSATWFLQDLANEQDAEGATIIEQ---SAVFEAPGLCYRNTPAVITTAVGQMAVSKGRQGREAQNLVKVYLANLRLKEVGTDILITAYEPLLINPLSESASSVGAGVAVPA---AQSGIMPMAEVFKLAVSSFKVHDWSLFGTA 201          
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|298706037|emb|CBJ29147.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 120.553 bits (301), Expect = 4.023e-29
Identity = 73/167 (43.71%), Postives = 99/167 (59.28%), Query Frame = 0
Query:   17 LFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERD--------KEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASF-NAAMFVKG 174
            LFGGA+   LPA++   SD+RQVPD+QEVF       S+++E+L  E D        K+G  +A +FF+DLA  N A ++   +  DLS  S++P LA+Y   AL G QTV+KF   DA    VR+YLVNVRL   GTD+L+T+N+P   Q  A  +   A  F  G
Sbjct:   14 LFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKEDGISIVIEVLSFEADINMDEQARKDGA-SARHFFDDLAAANGATSSACDFCGDLS-DSIMPKLASYTKSALAGRQTVAKFR-QDAPPDAVRLYLVNVRLPNVGTDLLITVNVPCPDQDTAVRTMAGAECFCSG 177          
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|1025090512|ref|XP_016456872.1| (PREDICTED: ran guanine nucleotide release factor-like [Nicotiana tabacum])

HSP 1 Score: 117.472 bits (293), Expect = 6.904e-29
Identity = 76/198 (38.38%), Postives = 105/198 (53.03%), Query Frame = 0
Query:   15 HALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNAT-IQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQ--APAAASFNAAMFVKGNVCPDSGMAALQE----ALASLTIRNWGLFGGAIR 205
             ALFGGAI+ + P  F   S++RQVPD+QEVF+D A D SLI+ELLDL+ D     +AT+F  DLA   DA+  T I+       T L            VG   VSK      A   V++YL N+RL++ GTD+L+T   P L    + +A++  A + V       SG+  + E    A+ S  + +W LFG A R
Sbjct:    9 RALFGGAISSTFPLRFQDVSNVRQVPDHQEVFVDPARDESLIIELLDLKVDVADSGSATWFLQDLANEQDAEGTTIIEQSAVFEATGLCYRNTPAVISTAVGQMAVSKGRQGREAQNLVKVYLANLRLKEVGTDILVTAYEPLLINPLSESASTVGAGVAVPAA---QSGIMPMAEVFKLAVPSFKVHDWSLFGTATR 203          
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|567955052|gb|ETK80685.1| (hypothetical protein L915_13708 [Phytophthora parasitica])

HSP 1 Score: 116.701 bits (291), Expect = 7.246e-29
Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 0
Query:   17 LFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDA--QNATIQYKEDLSGTSLVPNL-AAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLF 200
            LFGGA++  +P  F+  S  RQVPDNQEVF + A+D  +I+ELL  E      ++A YFFN++A+ N       T+  +E  +  +   N+ A + T  +VG Q+V+KF   D A   VR+YL N+RL    TDV+L+++ P +   PA++S +A  F   +   +   A  ++AL S  + +W LF
Sbjct:    5 LFGGALSCEIPEGFADVSSFRQVPDNQEVFANAATDQCVIVELLQYEESVTDAQSARYFFNEIAQSNGCGPDEVTVLLEEKANTKNAPANIDAPHTTQIIVGDQSVAKFKEGDHAKNVVRVYLGNIRLPGVTTDVVLSMSAP-MRINPASSSCDAFQFEDNS---EVAAAIFKQALQSFAVLDWSLF 187          
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|953490659|emb|CEG46313.1| (RAN guanine nucleotide release factor [Plasmopara halstedii])

HSP 1 Score: 116.701 bits (291), Expect = 7.560e-29
Identity = 70/189 (37.04%), Postives = 107/189 (56.61%), Query Frame = 0
Query:   17 LFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHN----DAQNATIQYKEDLSGTSL-VPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLF 200
            LFGGA++  +P  F   S  RQVPDNQEVF +  +D  +I+ELL  E   +  ++A YFFN++A+ N    D     ++ K D   T + VP++       +VG Q V+KF   D A   VR+YL N+RL    TDV+L+++ P +   PA++S NA  F   +   +  +A  ++AL S  +++W LF
Sbjct:    5 LFGGALSCEIPEDFVDVSSFRQVPDNQEVFANATTDQCVIVELLQFEESVDDNQSARYFFNEIAQSNGCGPDEVAVLLEEKTDTKLTGVDVPHIMRI----IVGDQCVAKFKEGDHAKNVVRVYLGNIRLPSVTTDVVLSVSAP-MRINPASSSRNAFQFEDNS---EVSVAIFKQALHSFAVKDWSLF 185          
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|566017676|gb|ETI40587.1| (hypothetical protein F443_14065 [Phytophthora parasitica P1569] >gi|568043313|gb|ETM40608.1| hypothetical protein L914_13501 [Phytophthora parasitica] >gi|570321344|gb|ETO69292.1| hypothetical protein F444_14096 [Phytophthora parasitica P1976])

HSP 1 Score: 116.701 bits (291), Expect = 7.726e-29
Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 0
Query:   17 LFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDA--QNATIQYKEDLSGTSLVPNL-AAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLF 200
            LFGGA++  +P  F+  S  RQVPDNQEVF + A+D  +I+ELL  E      ++A YFFN++A+ N       T+  +E  +  +   N+ A + T  +VG Q+V+KF   D A   VR+YL N+RL    TDV+L+++ P +   PA++S +A  F   +   +   A  ++AL S  + +W LF
Sbjct:    5 LFGGALSCEIPEGFADVSSFRQVPDNQEVFANAATDQCVIVELLQYEESVTDAQSACYFFNEIAQSNGCGPDEVTVLLEEKANTKNAPANIDAPHTTQIIVGDQSVAKFKEGDHAKNVVRVYLGNIRLPGVTTDVVLSMSAP-MRINPASSSRDAFQFEDNS---EVAAAIFKQALQSFAVLDWSLF 187          
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|729706574|emb|CEI96871.1| (hypothetical protein RMCBS344292_11019 [Rhizopus microsporus])

HSP 1 Score: 116.316 bits (290), Expect = 9.769e-29
Identity = 76/190 (40.00%), Postives = 99/190 (52.11%), Query Frame = 0
Query:   14 SHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPT--YALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLFG 201
            S  LFGGAI   +  SF  AS IRQVPDNQEVF+D  +  S I+ELL+   D +  E A + F  L E N+A ++ I   E      + P L    T  Y L G Q V+KF+  D AL  + I LV VR  Q  TD ++++N+P      AA S  A  F + NV  D     +   L  L +R+W LFG
Sbjct:    2 SRPLFGGAIVCPIRPSFLDASSIRQVPDNQEVFVDTETQQSFIVELLE-PADAQDQEIAKFHFQQLCEDNEAADSVIVSVEHCKPEDITPLLPKDTTEVYLLHGKQMVAKFNEKD-ALNTIDILLVVVRFNQVSTDCVISMNVPVQV---AANSSEAESFTQANV--DLAKQDIMTILQGLQVRDWNLFG 184          
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|1023187492|ref|XP_016290053.1| (hypothetical protein PSEUBRA_SCAF7g04588 [Kalmanozyma brasiliensis GHG001] >gi|557995518|gb|EST05064.1| hypothetical protein PSEUBRA_SCAF7g04588 [Kalmanozyma brasiliensis GHG001])

HSP 1 Score: 116.316 bits (290), Expect = 1.008e-28
Identity = 79/199 (39.70%), Postives = 103/199 (51.76%), Query Frame = 0
Query:    8 ISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDK---EGLEAATYF-FNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYA-LVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLFG 201
            +++   + ALFGGAIT+ LP  F  ASD RQVPDNQEV + D SD SLI+E+L L  D+   E L+ A  F F+ LA  N A ++T+     +S  ++ P   A P  A L GTQ V KF  A     PV I +   RL   G D++L++N P   Q    AS                  A + A ASL IR+W LF 
Sbjct:    1 MTQARETRALFGGAITVELPKGFIDASDFRQVPDNQEVLVRDDSDISLIIEVLQLATDEGADENLDKAVRFHFSSLAHDNSASSSTVHETHTISQATIPP---ATPQPATLTGTQLVRKFGKATEPEEPVNIRVALWRLPAKGIDLVLSVNEPGKTQDTPQAS--------------QAQDAFESAAASLCIRDWDLFA 182          
The following BLAST results are available for this feature:
BLAST of EWM24485.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105959|gb|EWM24485.1|4.509e-180100.00Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich [Nann... [more]
gi|698518347|ref|XP_009804047.1|2.279e-2938.76PREDICTED: ran guanine nucleotide release factor i... [more]
gi|1111037618|ref|XP_019225620.1|3.457e-2939.70PREDICTED: ran guanine nucleotide release factor-l... [more]
gi|298706037|emb|CBJ29147.1|4.023e-2943.71conserved unknown protein [Ectocarpus siliculosus][more]
gi|1025090512|ref|XP_016456872.1|6.904e-2938.38PREDICTED: ran guanine nucleotide release factor-l... [more]
gi|567955052|gb|ETK80685.1|7.246e-2936.90hypothetical protein L915_13708 [Phytophthora para... [more]
gi|953490659|emb|CEG46313.1|7.560e-2937.04RAN guanine nucleotide release factor [Plasmopara ... [more]
gi|566017676|gb|ETI40587.1|7.726e-2936.90hypothetical protein F443_14065 [Phytophthora para... [more]
gi|729706574|emb|CEI96871.1|9.769e-2940.00hypothetical protein RMCBS344292_11019 [Rhizopus m... [more]
gi|1023187492|ref|XP_016290053.1|1.008e-2839.70hypothetical protein PSEUBRA_SCAF7g04588 [Kalmanoz... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6205rna6205Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications