EWM24485.1, cds6190 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|585105959|gb|EWM24485.1| (Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich [Nannochloropsis gaditana]) HSP 1 Score: 502.671 bits (1293), Expect = 4.509e-180 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query: 1 MTRKEKSISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLFGGAIRIRESVQHEYTHITARQDGVGWAFSIRLLKVSNNALIKSREA 246
MTRKEKSISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLFGGAIRIRESVQHEYTHITARQDGVGWAFSIRLLKVSNNALIKSREA
Sbjct: 1 MTRKEKSISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLFGGAIRIRESVQHEYTHITARQDGVGWAFSIRLLKVSNNALIKSREA 246
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|698518347|ref|XP_009804047.1| (PREDICTED: ran guanine nucleotide release factor isoform X1 [Nicotiana sylvestris] >gi|1025280038|ref|XP_016495375.1| PREDICTED: ran guanine nucleotide release factor-like [Nicotiana tabacum]) HSP 1 Score: 118.627 bits (296), Expect = 2.279e-29 Identity = 81/209 (38.76%), Postives = 113/209 (54.07%), Query Frame = 0
Query: 5 EKSISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYAL----VGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQ--APAAASFNAAMFVKGNVCPDSGMAALQE----ALASLTIRNWGLFGGA 203
E S +E+ ALFGGAI+ + P F S++RQVPD+QEVF+D D SLI+ELLDL+ D +AT+F DLA DA+ ATI + S P L T A+ VG VSK A V++YL N+RL++ GTD+L+T P L + A++ A + V SG+ + E A++S + +W LFG A
Sbjct: 3 EDSCTER----ALFGGAISSTFPLRFQDVSNVRQVPDHQEVFVDPGRDESLIIELLDLKLDVADSGSATWFLQDLANEQDAEGATIIEQ---SAVFEAPGLCYRNTPAVISTAVGQMAVSKGRQGREAQNLVKVYLANLRLKEVGTDILITAYEPLLINPLSETASTVGAGIAVPAA---QSGIMPMAEVFKLAVSSFKVHDWSLFGTA 201
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|1111037618|ref|XP_019225620.1| (PREDICTED: ran guanine nucleotide release factor-like [Nicotiana attenuata] >gi|1102285609|gb|OIT32539.1| hypothetical protein A4A49_66090 [Nicotiana attenuata]) HSP 1 Score: 118.242 bits (295), Expect = 3.457e-29 Identity = 79/199 (39.70%), Postives = 109/199 (54.77%), Query Frame = 0
Query: 15 HALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYAL----VGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQ--APAAASFNAAMFVKGNVCPDSGMAALQE----ALASLTIRNWGLFGGA 203
ALFGGAI+ + P F S++RQVPD+QEVF+D D SLI+ELLDL+ D +AT+F DLA DA+ ATI + S P L T A+ VG VSK A V++YL N+RL++ GTD+L+T P L + +A+S A + V SG+ + E A++S + +W LFG A
Sbjct: 9 RALFGGAISSTFPLRFQDVSNVRQVPDHQEVFVDLGRDESLIIELLDLKLDVADSGSATWFLQDLANEQDAEGATIIEQ---SAVFEAPGLCYRNTPAVITTAVGQMAVSKGRQGREAQNLVKVYLANLRLKEVGTDILITAYEPLLINPLSESASSVGAGVAVPA---AQSGIMPMAEVFKLAVSSFKVHDWSLFGTA 201
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|298706037|emb|CBJ29147.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 120.553 bits (301), Expect = 4.023e-29 Identity = 73/167 (43.71%), Postives = 99/167 (59.28%), Query Frame = 0
Query: 17 LFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERD--------KEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASF-NAAMFVKG 174
LFGGA+ LPA++ SD+RQVPD+QEVF S+++E+L E D K+G +A +FF+DLA N A ++ + DLS S++P LA+Y AL G QTV+KF DA VR+YLVNVRL GTD+L+T+N+P Q A + A F G
Sbjct: 14 LFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKEDGISIVIEVLSFEADINMDEQARKDGA-SARHFFDDLAAANGATSSACDFCGDLS-DSIMPKLASYTKSALAGRQTVAKFR-QDAPPDAVRLYLVNVRLPNVGTDLLITVNVPCPDQDTAVRTMAGAECFCSG 177
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|1025090512|ref|XP_016456872.1| (PREDICTED: ran guanine nucleotide release factor-like [Nicotiana tabacum]) HSP 1 Score: 117.472 bits (293), Expect = 6.904e-29 Identity = 76/198 (38.38%), Postives = 105/198 (53.03%), Query Frame = 0
Query: 15 HALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNAT-IQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQ--APAAASFNAAMFVKGNVCPDSGMAALQE----ALASLTIRNWGLFGGAIR 205
ALFGGAI+ + P F S++RQVPD+QEVF+D A D SLI+ELLDL+ D +AT+F DLA DA+ T I+ T L VG VSK A V++YL N+RL++ GTD+L+T P L + +A++ A + V SG+ + E A+ S + +W LFG A R
Sbjct: 9 RALFGGAISSTFPLRFQDVSNVRQVPDHQEVFVDPARDESLIIELLDLKVDVADSGSATWFLQDLANEQDAEGTTIIEQSAVFEATGLCYRNTPAVISTAVGQMAVSKGRQGREAQNLVKVYLANLRLKEVGTDILVTAYEPLLINPLSESASTVGAGVAVPAA---QSGIMPMAEVFKLAVPSFKVHDWSLFGTATR 203
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|567955052|gb|ETK80685.1| (hypothetical protein L915_13708 [Phytophthora parasitica]) HSP 1 Score: 116.701 bits (291), Expect = 7.246e-29 Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 0
Query: 17 LFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDA--QNATIQYKEDLSGTSLVPNL-AAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLF 200
LFGGA++ +P F+ S RQVPDNQEVF + A+D +I+ELL E ++A YFFN++A+ N T+ +E + + N+ A + T +VG Q+V+KF D A VR+YL N+RL TDV+L+++ P + PA++S +A F + + A ++AL S + +W LF
Sbjct: 5 LFGGALSCEIPEGFADVSSFRQVPDNQEVFANAATDQCVIVELLQYEESVTDAQSARYFFNEIAQSNGCGPDEVTVLLEEKANTKNAPANIDAPHTTQIIVGDQSVAKFKEGDHAKNVVRVYLGNIRLPGVTTDVVLSMSAP-MRINPASSSCDAFQFEDNS---EVAAAIFKQALQSFAVLDWSLF 187
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|953490659|emb|CEG46313.1| (RAN guanine nucleotide release factor [Plasmopara halstedii]) HSP 1 Score: 116.701 bits (291), Expect = 7.560e-29 Identity = 70/189 (37.04%), Postives = 107/189 (56.61%), Query Frame = 0
Query: 17 LFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHN----DAQNATIQYKEDLSGTSL-VPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLF 200
LFGGA++ +P F S RQVPDNQEVF + +D +I+ELL E + ++A YFFN++A+ N D ++ K D T + VP++ +VG Q V+KF D A VR+YL N+RL TDV+L+++ P + PA++S NA F + + +A ++AL S +++W LF
Sbjct: 5 LFGGALSCEIPEDFVDVSSFRQVPDNQEVFANATTDQCVIVELLQFEESVDDNQSARYFFNEIAQSNGCGPDEVAVLLEEKTDTKLTGVDVPHIMRI----IVGDQCVAKFKEGDHAKNVVRVYLGNIRLPSVTTDVVLSVSAP-MRINPASSSRNAFQFEDNS---EVSVAIFKQALHSFAVKDWSLF 185
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|566017676|gb|ETI40587.1| (hypothetical protein F443_14065 [Phytophthora parasitica P1569] >gi|568043313|gb|ETM40608.1| hypothetical protein L914_13501 [Phytophthora parasitica] >gi|570321344|gb|ETO69292.1| hypothetical protein F444_14096 [Phytophthora parasitica P1976]) HSP 1 Score: 116.701 bits (291), Expect = 7.726e-29 Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 0
Query: 17 LFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDA--QNATIQYKEDLSGTSLVPNL-AAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLF 200
LFGGA++ +P F+ S RQVPDNQEVF + A+D +I+ELL E ++A YFFN++A+ N T+ +E + + N+ A + T +VG Q+V+KF D A VR+YL N+RL TDV+L+++ P + PA++S +A F + + A ++AL S + +W LF
Sbjct: 5 LFGGALSCEIPEGFADVSSFRQVPDNQEVFANAATDQCVIVELLQYEESVTDAQSACYFFNEIAQSNGCGPDEVTVLLEEKANTKNAPANIDAPHTTQIIVGDQSVAKFKEGDHAKNVVRVYLGNIRLPGVTTDVVLSMSAP-MRINPASSSRDAFQFEDNS---EVAAAIFKQALQSFAVLDWSLF 187
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|729706574|emb|CEI96871.1| (hypothetical protein RMCBS344292_11019 [Rhizopus microsporus]) HSP 1 Score: 116.316 bits (290), Expect = 9.769e-29 Identity = 76/190 (40.00%), Postives = 99/190 (52.11%), Query Frame = 0
Query: 14 SHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPT--YALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLFG 201
S LFGGAI + SF AS IRQVPDNQEVF+D + S I+ELL+ D + E A + F L E N+A ++ I E + P L T Y L G Q V+KF+ D AL + I LV VR Q TD ++++N+P AA S A F + NV D + L L +R+W LFG
Sbjct: 2 SRPLFGGAIVCPIRPSFLDASSIRQVPDNQEVFVDTETQQSFIVELLE-PADAQDQEIAKFHFQQLCEDNEAADSVIVSVEHCKPEDITPLLPKDTTEVYLLHGKQMVAKFNEKD-ALNTIDILLVVVRFNQVSTDCVISMNVPVQV---AANSSEAESFTQANV--DLAKQDIMTILQGLQVRDWNLFG 184
BLAST of EWM24485.1 vs. NCBI_GenBank
Match: gi|1023187492|ref|XP_016290053.1| (hypothetical protein PSEUBRA_SCAF7g04588 [Kalmanozyma brasiliensis GHG001] >gi|557995518|gb|EST05064.1| hypothetical protein PSEUBRA_SCAF7g04588 [Kalmanozyma brasiliensis GHG001]) HSP 1 Score: 116.316 bits (290), Expect = 1.008e-28 Identity = 79/199 (39.70%), Postives = 103/199 (51.76%), Query Frame = 0
Query: 8 ISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDK---EGLEAATYF-FNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYA-LVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLFG 201
+++ + ALFGGAIT+ LP F ASD RQVPDNQEV + D SD SLI+E+L L D+ E L+ A F F+ LA N A ++T+ +S ++ P A P A L GTQ V KF A PV I + RL G D++L++N P Q AS A + A ASL IR+W LF
Sbjct: 1 MTQARETRALFGGAITVELPKGFIDASDFRQVPDNQEVLVRDDSDISLIIEVLQLATDEGADENLDKAVRFHFSSLAHDNSASSSTVHETHTISQATIPP---ATPQPATLTGTQLVRKFGKATEPEEPVNIRVALWRLPAKGIDLVLSVNEPGKTQDTPQAS--------------QAQDAFESAAASLCIRDWDLFA 182 The following BLAST results are available for this feature:
BLAST of EWM24485.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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