EWM24486.1, cds6186 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|585105963|gb|EWM24486.1| (hypothetical protein Naga_101272g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 330.872 bits (847), Expect = 8.328e-115 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 Query: 1 MASSIRLLPSALKARHAALFALGIGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162 MASSIRLLPSALKARHAALFALGIGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA Sbjct: 1 MASSIRLLPSALKARHAALFALGIGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|923126699|ref|XP_013756816.1| (hypothetical protein AMSG_11995 [Thecamonas trahens ATCC 50062] >gi|906557470|gb|KNC50713.1| hypothetical protein AMSG_11995 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 146.747 bits (369), Expect = 9.368e-38 Identity = 77/155 (49.68%), Postives = 100/155 (64.52%), Query Frame = 0 Query: 8 LPSALKARHAALFALGIGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162 P++ K A ALG+ A Q DEG +RS+YFW AFPIYLHYR+ +V PE Q+ A+ LH++YA A DIIL L+GFYIKI QVG+TR+D +P +Y++ L I Q D+P F I+D VER LG PL VFA+F+ P+GAA Sbjct: 667 FPASGKLSVKAKLALGVVAA------QHDEGMQRSLYFWRNAFPIYLHYRFTMWRVADDPENVQDAAFEELHERYAERARDIILALRGFYIKIGQVGATRADMVPPQYMNALSILQDDVPPLS-FDTIRDIVERELGAPLDTVFADFEPRPLGAA 814
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|514690840|ref|XP_004992994.1| (hypothetical protein PTSG_06100 [Salpingoeca rosetta] >gi|326429167|gb|EGD74737.1| hypothetical protein PTSG_06100 [Salpingoeca rosetta]) HSP 1 Score: 144.821 bits (364), Expect = 1.272e-37 Identity = 68/130 (52.31%), Postives = 90/130 (69.23%), Query Frame = 0 Query: 33 YQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162 Y T T+R+V FW+ FPIY HYR+V LPEAE+ A+ LH++YAP+ + IIL ++GFYIKI Q+ STR+DF+P ++L RL+ Q +P EPF +Q VE SLG+PL VFAEFD P+GAA Sbjct: 24 YVTHTATQRTVSFWANVFPIYGHYRFVDITTAKLPEAERAAAFDKLHERYAPDLIRIILMMRGFYIKIGQIASTRADFMPPQFLDRLDKLQDQVP-PEPFAYVQSVVESSLGQPLSAVFAEFDPTPLGAA 152
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|298708408|emb|CBJ48471.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 144.436 bits (363), Expect = 1.278e-37 Identity = 70/125 (56.00%), Postives = 89/125 (71.20%), Query Frame = 0 Query: 38 GTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162 G RS FWS+A PI+L YR V+ +V LPE EQ+EAYAPLH +A EAVDIIL LKGFYIKI Q+ STR+DFLP +Y R+++ Q D P EP I+ VE+SLG+P+ +F F+ P+GAA Sbjct: 41 GLSRSAIFWSQALPIWLRYRVVQWKVDGLPEKEQDEAYAPLHDAHAKEAVDIILRLKGFYIKIGQLASTRADFLPPQYYDRVKMLQSDTPA-EPLDYIRGLVEQSLGQPIDTMFRSFEERPLGAA 164
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|873230817|emb|CEM09973.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 143.28 bits (360), Expect = 4.509e-37 Identity = 74/157 (47.13%), Postives = 95/157 (60.51%), Query Frame = 0 Query: 6 RLLPSALKARHAALFALGIGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162 RL+ + + A LG I TD+G RR+ YFW+RAFP+Y+HYR+ + V+ L E EQ Y LH+ +AP I HLKGFYIK+ Q+GSTR+DFL + YL E Q D P TEPF I D +E SLGK + EVF DH P+G+A Sbjct: 12 RLVGNFGRVVGLAGITLGATCTGVGIVAYTDQGARRNAYFWARAFPVYIHYRWTEWLVKDLSEEEQNRRYDALHELHAPRMEGIARHLKGFYIKLGQLGSTRTDFLAEPYLKVCERLQDDCP-TEPFERIVDIIENSLGKKVGEVFRHVDHKPLGSA 167
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|695400274|ref|XP_009522474.1| (hypothetical protein PHYSODRAFT_497640 [Phytophthora sojae] >gi|348679941|gb|EGZ19757.1| hypothetical protein PHYSODRAFT_497640 [Phytophthora sojae]) HSP 1 Score: 140.584 bits (353), Expect = 1.546e-36 Identity = 72/153 (47.06%), Postives = 98/153 (64.05%), Query Frame = 0 Query: 15 RHAALFALG---IGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEA--YAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162 RH A LG +G + +DEG RS+YFW +AFPIYLHYR + ++HL +++E++ Y LH KYAPE DI+L LKGFY+K+AQ GSTR D LP++YL R Q D P ++P + I +E+S GKP+ +VF D P+GAA Sbjct: 7 RHGARLLLGSTAVGAGGVTLAAHSDEGFNRSLYFWRKAFPIYLHYRAAQLYMEHLQLSDEEQSVEYEKLHDKYAPEVFDIVLELKGFYVKLAQTGSTRPDVLPKQYLDRAAQLQDDAP-SKPVSEICAIIEQSYGKPVGQVFRAIDPKPLGAA 158
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|669167718|ref|XP_008619421.1| (hypothetical protein SDRG_15036 [Saprolegnia diclina VS20] >gi|530728893|gb|EQC27135.1| hypothetical protein SDRG_15036 [Saprolegnia diclina VS20]) HSP 1 Score: 141.354 bits (355), Expect = 2.103e-36 Identity = 73/160 (45.62%), Postives = 100/160 (62.50%), Query Frame = 0 Query: 13 KARHAALFALGIGGAAGAIR------YQTDEGTRRSVYFWSRAFPIYLHYR----YVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162 ++ HAA A+ + G AI Q DEG RS+YF+++A P Y+HYR Y+ +Q L + EQ+ Y LH YAP D++LHLKGFY+K+AQ+GSTR DFLP++YL R +I Q D P ++P I +ERS GKP+ E+F D P+GAA Sbjct: 24 RSSHAAKAAMTLAGLTAAIGGGVYYGSQVDEGFARSLYFYTKAMPAYIHYRSKQVYINDVLQ-LSQDEQDAHYEELHDLYAPTLYDVVLHLKGFYVKLAQIGSTRHDFLPKQYLDRCKILQSDAP-SKPMDEIVGIIERSFGKPISEIFLSIDTKPLGAA 181
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|567971705|gb|ETK96708.1| (hypothetical protein L915_00641 [Phytophthora parasitica]) HSP 1 Score: 140.969 bits (354), Expect = 2.415e-36 Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 0 Query: 15 RHAALFALG-IGGAAGAIRY--QTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQH--LPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162 R+ A LG AG + Y +DEG RS+YFW +AFPIYLHYR + ++H L + EQ+ Y LH+KYAPE DI+L LKGFY+K+AQ GSTR D LP++YL R Q D P ++P I +E S GKP+ +VF D P+GAA Sbjct: 7 RNGARMLLGSTAMGAGGVTYAAHSDEGFNRSLYFWRKAFPIYLHYRAAQLYMEHAQLSDEEQDAEYEKLHEKYAPEVFDIVLELKGFYVKLAQTGSTRPDVLPKQYLERAAKLQDDAP-SKPVEEICAIIEHSYGKPIDQVFQSIDSKPLGAA 158
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|675162721|ref|XP_008890245.1| (hypothetical protein PPTG_00585 [Phytophthora parasitica INRA-310] >gi|566034006|gb|ETI56917.1| hypothetical protein F443_00700 [Phytophthora parasitica P1569] >gi|568000026|gb|ETL50054.1| hypothetical protein L916_00642 [Phytophthora parasitica] >gi|568029184|gb|ETM03115.1| hypothetical protein L917_00612 [Phytophthora parasitica] >gi|568059818|gb|ETM56380.1| hypothetical protein L914_00633 [Phytophthora parasitica] >gi|568109541|gb|ETN24148.1| hypothetical protein PPTG_00585 [Phytophthora parasitica INRA-310] >gi|570337740|gb|ETO85688.1| hypothetical protein F444_00693 [Phytophthora parasitica P1976] >gi|570961721|gb|ETP26700.1| hypothetical protein F441_00689 [Phytophthora parasitica CJ01A1] >gi|570998474|gb|ETP54692.1| hypothetical protein F442_00660 [Phytophthora parasitica P10297]) HSP 1 Score: 140.969 bits (354), Expect = 2.415e-36 Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 0 Query: 15 RHAALFALG-IGGAAGAIRY--QTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQH--LPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162 R+ A LG AG + Y +DEG RS+YFW +AFPIYLHYR + ++H L + EQ+ Y LH+KYAPE DI+L LKGFY+K+AQ GSTR D LP++YL R Q D P ++P I +E S GKP+ +VF D P+GAA Sbjct: 7 RNGARMLLGSTAMGAGGVTYAAHSDEGFNRSLYFWRKAFPIYLHYRAAQLYMEHAQLSDEEQDAEYEKLHEKYAPEVFDIVLELKGFYVKLAQTGSTRPDVLPKQYLERAAKLQDDAP-SKPVEEICAIIEHSYGKPIDQVFQSIDSKPLGAA 158
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|970651486|gb|KUF90294.1| (hypothetical protein AM588_10002626 [Phytophthora nicotianae]) HSP 1 Score: 140.969 bits (354), Expect = 2.491e-36 Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 0 Query: 15 RHAALFALG-IGGAAGAIRY--QTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQH--LPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162 R+ A LG AG + Y +DEG RS+YFW +AFPIYLHYR + ++H L + EQ+ Y LH+KYAPE DI+L LKGFY+K+AQ GSTR D LP++YL R Q D P ++P I +E S GKP+ +VF D P+GAA Sbjct: 7 RNGARMLLGSTAMGAGGVTYAAHSDEGFNRSLYFWRKAFPIYLHYRAAQLYMEHAQLSDEEQDAEYEKLHEKYAPEVFDIVLELKGFYVKLAQTGSTRPDVLPKQYLERAAKLQDDAP-SKPVEEICAIIEHSYGKPIDQVFQSIDSKPLGAA 158 The following BLAST results are available for this feature:
BLAST of EWM24486.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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