EWM24486.1, cds6186 (CDS) Nannochloropsis gaditana

Overview
NameEWM24486.1
Unique Namecds6186
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:827704..827755 -
Alignment locationCM002467.1:827395..827516 -
Alignment locationCM002467.1:827036..827158 -
Alignment locationCM002467.1:826884..826915 -
Alignment locationCM002467.1:826511..826590 -
Alignment locationCM002467.1:826312..826388 -

Link to JBrowse

Properties
Property NameValue
Start range826312
Start range.
Protein idEWM24486.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101272g2.7596.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:827704..827755 -
CM002467.1supercontigCM002467.1:827395..827516 -
CM002467.1supercontigCM002467.1:827036..827158 -
CM002467.1supercontigCM002467.1:826884..826915 -
CM002467.1supercontigCM002467.1:826511..826590 -
CM002467.1supercontigCM002467.1:826312..826388 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|585105963|gb|EWM24486.1| (hypothetical protein Naga_101272g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 330.872 bits (847), Expect = 8.328e-115
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MASSIRLLPSALKARHAALFALGIGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
            MASSIRLLPSALKARHAALFALGIGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA
Sbjct:    1 MASSIRLLPSALKARHAALFALGIGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162          
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|923126699|ref|XP_013756816.1| (hypothetical protein AMSG_11995 [Thecamonas trahens ATCC 50062] >gi|906557470|gb|KNC50713.1| hypothetical protein AMSG_11995 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 146.747 bits (369), Expect = 9.368e-38
Identity = 77/155 (49.68%), Postives = 100/155 (64.52%), Query Frame = 0
Query:    8 LPSALKARHAALFALGIGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
             P++ K    A  ALG+  A      Q DEG +RS+YFW  AFPIYLHYR+   +V   PE  Q+ A+  LH++YA  A DIIL L+GFYIKI QVG+TR+D +P +Y++ L I Q D+P    F  I+D VER LG PL  VFA+F+  P+GAA
Sbjct:  667 FPASGKLSVKAKLALGVVAA------QHDEGMQRSLYFWRNAFPIYLHYRFTMWRVADDPENVQDAAFEELHERYAERARDIILALRGFYIKIGQVGATRADMVPPQYMNALSILQDDVPPLS-FDTIRDIVERELGAPLDTVFADFEPRPLGAA 814          
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|514690840|ref|XP_004992994.1| (hypothetical protein PTSG_06100 [Salpingoeca rosetta] >gi|326429167|gb|EGD74737.1| hypothetical protein PTSG_06100 [Salpingoeca rosetta])

HSP 1 Score: 144.821 bits (364), Expect = 1.272e-37
Identity = 68/130 (52.31%), Postives = 90/130 (69.23%), Query Frame = 0
Query:   33 YQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
            Y T   T+R+V FW+  FPIY HYR+V      LPEAE+  A+  LH++YAP+ + IIL ++GFYIKI Q+ STR+DF+P ++L RL+  Q  +P  EPF  +Q  VE SLG+PL  VFAEFD  P+GAA
Sbjct:   24 YVTHTATQRTVSFWANVFPIYGHYRFVDITTAKLPEAERAAAFDKLHERYAPDLIRIILMMRGFYIKIGQIASTRADFMPPQFLDRLDKLQDQVP-PEPFAYVQSVVESSLGQPLSAVFAEFDPTPLGAA 152          
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|298708408|emb|CBJ48471.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 144.436 bits (363), Expect = 1.278e-37
Identity = 70/125 (56.00%), Postives = 89/125 (71.20%), Query Frame = 0
Query:   38 GTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
            G  RS  FWS+A PI+L YR V+ +V  LPE EQ+EAYAPLH  +A EAVDIIL LKGFYIKI Q+ STR+DFLP +Y  R+++ Q D P  EP   I+  VE+SLG+P+  +F  F+  P+GAA
Sbjct:   41 GLSRSAIFWSQALPIWLRYRVVQWKVDGLPEKEQDEAYAPLHDAHAKEAVDIILRLKGFYIKIGQLASTRADFLPPQYYDRVKMLQSDTPA-EPLDYIRGLVEQSLGQPIDTMFRSFEERPLGAA 164          
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|873230817|emb|CEM09973.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 143.28 bits (360), Expect = 4.509e-37
Identity = 74/157 (47.13%), Postives = 95/157 (60.51%), Query Frame = 0
Query:    6 RLLPSALKARHAALFALGIGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
            RL+ +  +    A   LG       I   TD+G RR+ YFW+RAFP+Y+HYR+ +  V+ L E EQ   Y  LH+ +AP    I  HLKGFYIK+ Q+GSTR+DFL + YL   E  Q D P TEPF  I D +E SLGK + EVF   DH P+G+A
Sbjct:   12 RLVGNFGRVVGLAGITLGATCTGVGIVAYTDQGARRNAYFWARAFPVYIHYRWTEWLVKDLSEEEQNRRYDALHELHAPRMEGIARHLKGFYIKLGQLGSTRTDFLAEPYLKVCERLQDDCP-TEPFERIVDIIENSLGKKVGEVFRHVDHKPLGSA 167          
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|695400274|ref|XP_009522474.1| (hypothetical protein PHYSODRAFT_497640 [Phytophthora sojae] >gi|348679941|gb|EGZ19757.1| hypothetical protein PHYSODRAFT_497640 [Phytophthora sojae])

HSP 1 Score: 140.584 bits (353), Expect = 1.546e-36
Identity = 72/153 (47.06%), Postives = 98/153 (64.05%), Query Frame = 0
Query:   15 RHAALFALG---IGGAAGAIRYQTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQHLPEAEQEEA--YAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
            RH A   LG   +G     +   +DEG  RS+YFW +AFPIYLHYR  +  ++HL  +++E++  Y  LH KYAPE  DI+L LKGFY+K+AQ GSTR D LP++YL R    Q D P ++P + I   +E+S GKP+ +VF   D  P+GAA
Sbjct:    7 RHGARLLLGSTAVGAGGVTLAAHSDEGFNRSLYFWRKAFPIYLHYRAAQLYMEHLQLSDEEQSVEYEKLHDKYAPEVFDIVLELKGFYVKLAQTGSTRPDVLPKQYLDRAAQLQDDAP-SKPVSEICAIIEQSYGKPVGQVFRAIDPKPLGAA 158          
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|669167718|ref|XP_008619421.1| (hypothetical protein SDRG_15036 [Saprolegnia diclina VS20] >gi|530728893|gb|EQC27135.1| hypothetical protein SDRG_15036 [Saprolegnia diclina VS20])

HSP 1 Score: 141.354 bits (355), Expect = 2.103e-36
Identity = 73/160 (45.62%), Postives = 100/160 (62.50%), Query Frame = 0
Query:   13 KARHAALFALGIGGAAGAIR------YQTDEGTRRSVYFWSRAFPIYLHYR----YVKSQVQHLPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
            ++ HAA  A+ + G   AI        Q DEG  RS+YF+++A P Y+HYR    Y+   +Q L + EQ+  Y  LH  YAP   D++LHLKGFY+K+AQ+GSTR DFLP++YL R +I Q D P ++P   I   +ERS GKP+ E+F   D  P+GAA
Sbjct:   24 RSSHAAKAAMTLAGLTAAIGGGVYYGSQVDEGFARSLYFYTKAMPAYIHYRSKQVYINDVLQ-LSQDEQDAHYEELHDLYAPTLYDVVLHLKGFYVKLAQIGSTRHDFLPKQYLDRCKILQSDAP-SKPMDEIVGIIERSFGKPISEIFLSIDTKPLGAA 181          
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|567971705|gb|ETK96708.1| (hypothetical protein L915_00641 [Phytophthora parasitica])

HSP 1 Score: 140.969 bits (354), Expect = 2.415e-36
Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 0
Query:   15 RHAALFALG-IGGAAGAIRY--QTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQH--LPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
            R+ A   LG     AG + Y   +DEG  RS+YFW +AFPIYLHYR  +  ++H  L + EQ+  Y  LH+KYAPE  DI+L LKGFY+K+AQ GSTR D LP++YL R    Q D P ++P   I   +E S GKP+ +VF   D  P+GAA
Sbjct:    7 RNGARMLLGSTAMGAGGVTYAAHSDEGFNRSLYFWRKAFPIYLHYRAAQLYMEHAQLSDEEQDAEYEKLHEKYAPEVFDIVLELKGFYVKLAQTGSTRPDVLPKQYLERAAKLQDDAP-SKPVEEICAIIEHSYGKPIDQVFQSIDSKPLGAA 158          
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|675162721|ref|XP_008890245.1| (hypothetical protein PPTG_00585 [Phytophthora parasitica INRA-310] >gi|566034006|gb|ETI56917.1| hypothetical protein F443_00700 [Phytophthora parasitica P1569] >gi|568000026|gb|ETL50054.1| hypothetical protein L916_00642 [Phytophthora parasitica] >gi|568029184|gb|ETM03115.1| hypothetical protein L917_00612 [Phytophthora parasitica] >gi|568059818|gb|ETM56380.1| hypothetical protein L914_00633 [Phytophthora parasitica] >gi|568109541|gb|ETN24148.1| hypothetical protein PPTG_00585 [Phytophthora parasitica INRA-310] >gi|570337740|gb|ETO85688.1| hypothetical protein F444_00693 [Phytophthora parasitica P1976] >gi|570961721|gb|ETP26700.1| hypothetical protein F441_00689 [Phytophthora parasitica CJ01A1] >gi|570998474|gb|ETP54692.1| hypothetical protein F442_00660 [Phytophthora parasitica P10297])

HSP 1 Score: 140.969 bits (354), Expect = 2.415e-36
Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 0
Query:   15 RHAALFALG-IGGAAGAIRY--QTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQH--LPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
            R+ A   LG     AG + Y   +DEG  RS+YFW +AFPIYLHYR  +  ++H  L + EQ+  Y  LH+KYAPE  DI+L LKGFY+K+AQ GSTR D LP++YL R    Q D P ++P   I   +E S GKP+ +VF   D  P+GAA
Sbjct:    7 RNGARMLLGSTAMGAGGVTYAAHSDEGFNRSLYFWRKAFPIYLHYRAAQLYMEHAQLSDEEQDAEYEKLHEKYAPEVFDIVLELKGFYVKLAQTGSTRPDVLPKQYLERAAKLQDDAP-SKPVEEICAIIEHSYGKPIDQVFQSIDSKPLGAA 158          
BLAST of EWM24486.1 vs. NCBI_GenBank
Match: gi|970651486|gb|KUF90294.1| (hypothetical protein AM588_10002626 [Phytophthora nicotianae])

HSP 1 Score: 140.969 bits (354), Expect = 2.491e-36
Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 0
Query:   15 RHAALFALG-IGGAAGAIRY--QTDEGTRRSVYFWSRAFPIYLHYRYVKSQVQH--LPEAEQEEAYAPLHQKYAPEAVDIILHLKGFYIKIAQVGSTRSDFLPQEYLSRLEIFQGDIPCTEPFTAIQDTVERSLGKPLPEVFAEFDHIPVGAA 162
            R+ A   LG     AG + Y   +DEG  RS+YFW +AFPIYLHYR  +  ++H  L + EQ+  Y  LH+KYAPE  DI+L LKGFY+K+AQ GSTR D LP++YL R    Q D P ++P   I   +E S GKP+ +VF   D  P+GAA
Sbjct:    7 RNGARMLLGSTAMGAGGVTYAAHSDEGFNRSLYFWRKAFPIYLHYRAAQLYMEHAQLSDEEQDAEYEKLHEKYAPEVFDIVLELKGFYVKLAQTGSTRPDVLPKQYLERAAKLQDDAP-SKPVEEICAIIEHSYGKPIDQVFQSIDSKPLGAA 158          
The following BLAST results are available for this feature:
BLAST of EWM24486.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105963|gb|EWM24486.1|8.328e-115100.00hypothetical protein Naga_101272g2, partial [Nanno... [more]
gi|923126699|ref|XP_013756816.1|9.368e-3849.68hypothetical protein AMSG_11995 [Thecamonas trahen... [more]
gi|514690840|ref|XP_004992994.1|1.272e-3752.31hypothetical protein PTSG_06100 [Salpingoeca roset... [more]
gi|298708408|emb|CBJ48471.1|1.278e-3756.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|873230817|emb|CEM09973.1|4.509e-3747.13unnamed protein product [Vitrella brassicaformis C... [more]
gi|695400274|ref|XP_009522474.1|1.546e-3647.06hypothetical protein PHYSODRAFT_497640 [Phytophtho... [more]
gi|669167718|ref|XP_008619421.1|2.103e-3645.63hypothetical protein SDRG_15036 [Saprolegnia dicli... [more]
gi|567971705|gb|ETK96708.1|2.415e-3648.37hypothetical protein L915_00641 [Phytophthora para... [more]
gi|675162721|ref|XP_008890245.1|2.415e-3648.37hypothetical protein PPTG_00585 [Phytophthora para... [more]
gi|970651486|gb|KUF90294.1|2.491e-3648.37hypothetical protein AM588_10002626 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6201rna6201Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications