EWM24493.1, cds6180 (CDS) Nannochloropsis gaditana

Overview
NameEWM24493.1
Unique Namecds6180
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:815762..815810 +
Alignment locationCM002467.1:815948..816110 +
Alignment locationCM002467.1:816282..817030 +

Link to JBrowse

Properties
Property NameValue
End range.
End range817030
Protein idEWM24493.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100883g3.3079.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:815762..815810 +
CM002467.1supercontigCM002467.1:815948..816110 +
CM002467.1supercontigCM002467.1:816282..817030 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24493.1 vs. NCBI_GenBank
Match: gi|585105976|gb|EWM24493.1| (hypothetical protein Naga_100883g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0 
Query:    1 MDEAELNLGATLSPSRDEKEALLLLLSLPSVANVRVPDERDNTKRKPGPPPRYFPITSFPSTAHVPSGRQCGIYPFLSPANRSPTFPGSNGGEPSDECSISSLSSGGTINSMDVDVSCALPQKNGSKRWMSQSVSAAVWDDEDGGETDQVPMTSEDDDEEEEEEEEGEGWGEEEEEVAGEKKETYSSPLRSGQVAQRREGTGREDAEGEVLQAVGAGEEEEEEEEEEGREDEEVVMVKADGSFLLLSDSPWTRQSRRREREGTGLPSSPSLPPSLPHGPPRECGGQRVERQKEDGLLPTTMMAALELRGLKEGVLVTEVG 320
            MDEAELNLGATLSPSRDEKEALLLLLSLPSVANVRVPDERDNTKRKPGPPPRYFPITSFPSTAHVPSGRQCGIYPFLSPANRSPTFPGSNGGEPSDECSISSLSSGGTINSMDVDVSCALPQKNGSKRWMSQSVSAAVWDDEDGGETDQVPMTSEDDDEEEEEEEEGEGWGEEEEEVAGEKKETYSSPLRSGQVAQRREGTGREDAEGEVLQAVGAGEEEEEEEEEEGREDEEVVMVKADGSFLLLSDSPWTRQSRRREREGTGLPSSPSLPPSLPHGPPRECGGQRVERQKEDGLLPTTMMAALELRGLKEGVLVTEVG
Sbjct:    1 MDEAELNLGATLSPSRDEKEALLLLLSLPSVANVRVPDERDNTKRKPGPPPRYFPITSFPSTAHVPSGRQCGIYPFLSPANRSPTFPGSNGGEPSDECSISSLSSGGTINSMDVDVSCALPQKNGSKRWMSQSVSAAVWDDEDGGETDQVPMTSEDDDEEEEEEEEGEGWGEEEEEVAGEKKETYSSPLRSGQVAQRREGTGREDAEGEVLQAVGAGEEEEEEEEEEGREDEEVVMVKADGSFLLLSDSPWTRQSRRREREGTGLPSSPSLPPSLPHGPPRECGGQRVERQKEDGLLPTTMMAALELRGLKEGVLVTEVG 320
[Close]
BLAST of EWM24493.1 vs. NCBI_GenBank
Match: gi|553192916|ref|XP_005855669.1| (hypothetical protein NGA_0649100 [Nannochloropsis gaditana CCMP526] >gi|422293387|gb|EKU20687.1| hypothetical protein NGA_0649100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 382.874 bits (982), Expect = 6.293e-132
Identity = 203/237 (85.65%), Postives = 203/237 (85.65%), Query Frame = 0 
Query:    1 MDEAELNLGATLSPSRDEKEALLLLLSLPSVANVRVPDERDNTKRKPGPPPRYFPITSFPSTAHVPSGRQCGIYPFLSPANRSPTFPGSNGGEPSDECSISSLSSGGTINSMDVDVSCALPQKNGSKRWMSQSVSAAVWDDEDGGETDQVPMTSEDDDEEEEEEEEGEGWGEEEEEVAGEKKETYSSPLRSGQVAQRREGTGREDAEGEVLQAVGAGEEEEEEEEEEGREDEEVVMV 237
            MDEAELNLGATLSPSRDEKEALLLLLSLPSVANVRVPDERDNTKRKPGPPPRYFPITSFPSTAHVPSGRQC                               LSSGGTINSMDVDVSCALPQKNGSKRWMSQSVSAAVWDDEDGGETDQVPMTSEDDDEEEEEEEEGEGWGEEEEEVAGEKKETYSSPLRSGQVAQRREGTGREDAEGEVLQAVGAGEEEEEEEEEEGREDEEV   
Sbjct:    1 MDEAELNLGATLSPSRDEKEALLLLLSLPSVANVRVPDERDNTKRKPGPPPRYFPITSFPSTAHVPSGRQC-------------------------------LSSGGTINSMDVDVSCALPQKNGSKRWMSQSVSAAVWDDEDGGETDQVPMTSEDDDEEEEEEEEGEGWGEEEEEVAGEKKETYSSPLRSGQVAQRREGTGREDAEGEVLQAVGAGEEEEEEEEEEGREDEEVTFF 206
The following BLAST results are available for this feature:
BLAST of EWM24493.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105976|gb|EWM24493.1|0.000e+0100.00hypothetical protein Naga_100883g3, partial [Nanno... [more]
gi|553192916|ref|XP_005855669.1|6.293e-13285.65hypothetical protein NGA_0649100 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6195rna6195Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications