EWM24504.1, cds6169 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|553191689|ref|XP_005855433.1| (leucine rich repeat containing 56 [Nannochloropsis gaditana CCMP526] >gi|422293626|gb|EKU20926.1| leucine rich repeat containing 56 [Nannochloropsis gaditana CCMP526] >gi|585105999|gb|EWM24504.1| hypothetical protein Naga_100796g3 [Nannochloropsis gaditana]) HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0 Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0
Query: 1 MQHASKADFPANSEKIQWNERRRLAAARRLAASYSSSSLRPVSPKDNNATTLTAAWLRKHYKCASVPMWTEDTDEHEDTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVERALQNLAIGSKIDSSYRKIVGSLIPQLHVLDGKKLPKSEKDGEEQDIDEAAWRNVVLLLQKMEDEERDEEKTERWENRKADRVSKRITD 306
MQHASKADFPANSEKIQWNERRRLAAARRLAASYSSSSLRPVSPKDNNATTLTAAWLRKHYKCASVPMWTEDTDEHEDTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVERALQNLAIGSKIDSSYRKIVGSLIPQLHVLDGKKLPKSEKDGEEQDIDEAAWRNVVLLLQKMEDEERDEEKTERWENRKADRVSKRITD
Sbjct: 1 MQHASKADFPANSEKIQWNERRRLAAARRLAASYSSSSLRPVSPKDNNATTLTAAWLRKHYKCASVPMWTEDTDEHEDTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVERALQNLAIGSKIDSSYRKIVGSLIPQLHVLDGKKLPKSEKDGEEQDIDEAAWRNVVLLLQKMEDEERDEEKTERWENRKADRVSKRITD 306
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|594042603|ref|XP_006045833.1| (PREDICTED: leucine-rich repeat-containing protein 56 isoform X14 [Bubalus bubalis]) HSP 1 Score: 104.375 bits (259), Expect = 2.101e-21 Identity = 70/172 (40.70%), Postives = 95/172 (55.23%), Query Frame = 0
Query: 78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
D LR V+ L + +T ++L +LG LP+L L SCL SLRDLG+ LGHL+VL L C L LDG+++FP L+E+YLS+N + DL+PL L + L +LD+ N L L C + TL+++ P+ R SYR V LIPQL VLD
Sbjct: 66 DDLRLVSVLEMCVNTRE---SSLGSLGLHLPNLSQLKLNGSCLGSLRDLGTSLGHLQVLWLARCGLADLDGISSFPALKELYLSYNDIWDLSPLCLLEQLEVLDLEGNCV----EDPGQLRYLQLCPRLATLTLEGNPLCLRPGSGPTHQVPQGYSYRAEVRKLIPQLQVLD 230
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|1187629479|ref|XP_020767795.1| (leucine-rich repeat-containing protein 56 isoform X1 [Odocoileus virginianus texanus] >gi|1187629481|ref|XP_020767796.1| leucine-rich repeat-containing protein 56 isoform X1 [Odocoileus virginianus texanus] >gi|1187629483|ref|XP_020767797.1| leucine-rich repeat-containing protein 56 isoform X1 [Odocoileus virginianus texanus] >gi|1187629485|ref|XP_020767798.1| leucine-rich repeat-containing protein 56 isoform X1 [Odocoileus virginianus texanus] >gi|1187629487|ref|XP_020767799.1| leucine-rich repeat-containing protein 56 isoform X1 [Odocoileus virginianus texanus]) HSP 1 Score: 104.375 bits (259), Expect = 2.237e-21 Identity = 69/174 (39.66%), Postives = 95/174 (54.60%), Query Frame = 0
Query: 76 HEDTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
ED L+ V+ L + +T +L + G LP+L L SCL SLRDLG+ LGHL VL L C L LDG+++FP L+E+YLS+N + DL+PL L +HL +LD+ N + L L C + TL+++ P+ R +YR V LIPQL VLD
Sbjct: 64 QEDDLQLVSMLEMCVNTRE---NSLGSFGLHLPNLSQLKLNGSCLGSLRDLGTSLGHLHVLWLARCGLADLDGISSFPALKELYLSYNDIWDLSPLCLLEHLEVLDLEGNCV----EDLGQLRYLQLCPRLATLTLEGNPLCLRPGPGPTHQVPRGYNYRAEVRKLIPQLQVLD 230
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|594042577|ref|XP_006045820.1| (PREDICTED: leucine-rich repeat-containing protein 56 isoform X1 [Bubalus bubalis] >gi|594042579|ref|XP_006045821.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X2 [Bubalus bubalis] >gi|594042581|ref|XP_006045822.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X3 [Bubalus bubalis] >gi|594042583|ref|XP_006045823.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X4 [Bubalus bubalis] >gi|594042585|ref|XP_006045824.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X5 [Bubalus bubalis] >gi|594042587|ref|XP_006045825.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X6 [Bubalus bubalis] >gi|594042589|ref|XP_006045826.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X7 [Bubalus bubalis] >gi|594042591|ref|XP_006045827.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X8 [Bubalus bubalis] >gi|594042593|ref|XP_006045828.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X9 [Bubalus bubalis] >gi|594042595|ref|XP_006045829.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X10 [Bubalus bubalis] >gi|594042597|ref|XP_006045830.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X11 [Bubalus bubalis] >gi|594042599|ref|XP_006045831.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X12 [Bubalus bubalis] >gi|594042601|ref|XP_006045832.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X13 [Bubalus bubalis]) HSP 1 Score: 103.99 bits (258), Expect = 2.559e-21 Identity = 70/172 (40.70%), Postives = 95/172 (55.23%), Query Frame = 0
Query: 78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
D LR V+ L + +T ++L +LG LP+L L SCL SLRDLG+ LGHL+VL L C L LDG+++FP L+E+YLS+N + DL+PL L + L +LD+ N L L C + TL+++ P+ R SYR V LIPQL VLD
Sbjct: 66 DDLRLVSVLEMCVNTRE---SSLGSLGLHLPNLSQLKLNGSCLGSLRDLGTSLGHLQVLWLARCGLADLDGISSFPALKELYLSYNDIWDLSPLCLLEQLEVLDLEGNCV----EDPGQLRYLQLCPRLATLTLEGNPLCLRPGSGPTHQVPQGYSYRAEVRKLIPQLQVLD 230
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|594042605|ref|XP_006045834.1| (PREDICTED: leucine-rich repeat-containing protein 56 isoform X15 [Bubalus bubalis]) HSP 1 Score: 102.834 bits (255), Expect = 3.722e-21 Identity = 70/172 (40.70%), Postives = 95/172 (55.23%), Query Frame = 0
Query: 78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
D LR V+ L + +T ++L +LG LP+L L SCL SLRDLG+ LGHL+VL L C L LDG+++FP L+E+YLS+N + DL+PL L + L +LD+ N L L C + TL+++ P+ R SYR V LIPQL VLD
Sbjct: 66 DDLRLVSVLEMCVNTRE---SSLGSLGLHLPNLSQLKLNGSCLGSLRDLGTSLGHLQVLWLARCGLADLDGISSFPALKELYLSYNDIWDLSPLCLLEQLEVLDLEGNCV----EDPGQLRYLQLCPRLATLTLEGNPLCLRPGSGPTHQVPQGYSYRAEVRKLIPQLQVLD 230
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|1048435988|ref|XP_017534333.1| (PREDICTED: leucine-rich repeat-containing protein 56 [Manis javanica]) HSP 1 Score: 103.219 bits (256), Expect = 5.443e-21 Identity = 68/178 (38.20%), Postives = 95/178 (53.37%), Query Frame = 0
Query: 78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLS-------MKETPVERALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
D LR V+ L + +T +L T G LP+L L SCL S+RDLG+ LGHL+VL L C L LDG+ +FP L+E+Y+S+N + DL+PL L + L +LD+ N + L L C + TL+ ++ +P +A Q +YR V LIPQL VLD
Sbjct: 65 DDLRLVSMLEMCVNTRD---NSLGTFGVHLPNLRHLKLNGSCLGSVRDLGTSLGHLQVLWLARCGLTDLDGIGSFPALKELYVSYNDISDLSPLCLLEQLEVLDLEGNSV----EGLGQLRYLQLCPRLATLTLEGNLVCLQPSPCNKAPQGY--------NYRAEVRKLIPQLQVLD 227
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|634871925|ref|XP_007947555.1| (PREDICTED: leucine-rich repeat-containing protein 56 [Orycteropus afer afer]) HSP 1 Score: 102.064 bits (253), Expect = 9.357e-21 Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 0
Query: 99 NLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVERALQNLAIGS---KIDSSYRKIVGSLIPQLHVLD 248
+L G LP+L L SCL+S+RDLG+ LGHL+VL L C L LDG+++FP L+E+Y+S+N + DL+PL L + L +LD+ N + +H L C + TL+++ PV LQ S +YR V LIPQL VLD
Sbjct: 15 SLGNFGIHLPNLSQLKLNGSCLASVRDLGTSLGHLQVLWLACCGLPDLDGISSFPALKELYVSYNNVSDLSPLCLLEQLEVLDLEGNSV----EDLGQVHYLRLCPRLATLTLEGNPV--CLQPGPGPSNKAPQGYNYRAEVRKLIPQLQVLD 161
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|953497187|emb|CEG41496.1| (Protein phosphatase 1, regulatory subunit, and related proteins [Plasmopara halstedii]) HSP 1 Score: 102.449 bits (254), Expect = 1.468e-20 Identity = 73/229 (31.88%), Postives = 113/229 (49.34%), Query Frame = 0
Query: 35 SSSSLRPVSPKDNNATTLTAAWLRKHYKCASVPMWTEDTDEHEDTLRNVTHLS-LTRSTD-----TPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVERALQNLAIGSKIDSSYRKIVGSLIPQLHVLDGKKLPKSEK 257
+S SL VSP + + + K+ + S+ + D E+ LR ++ +S L R T + ++E +GELLPSL+ S L S RDLG+ L LRVL C + LDG+ A L+E+YL HN + D++PL +HD + I+D+ N + + LA C + +L + P+E Q YR+IV + +PQL D K + SE+
Sbjct: 44 ASGSLFSVSPMNKH--------INKNRRRDSIQLDNPFDDITEEKLRQLSKMSNLERVTSLHISIDSEKQSVEVIGELLPSLQQLHFQQSSLRSFRDLGTSLRSLRVLWAAQCQISNLDGIGALMNLQELYLQHNNVNDVSPLTMHDEIGIIDLEGNQM----TEFRQIEQLAFCLQLRSLKLAGNPIETVKQ-----------YRQIVANFLPQLVKFDDKIVCDSER 249
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|440906586|gb|ELR56834.1| (Leucine-rich repeat-containing protein 56, partial [Bos mutus]) HSP 1 Score: 101.679 bits (252), Expect = 1.696e-20 Identity = 68/172 (39.53%), Postives = 95/172 (55.23%), Query Frame = 0
Query: 78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
D LR V+ L + +T ++L +LG LP+L L SCL SLRDLG+ L HL+VL L C L LDG+++FP L+E+YLS+N + DL+PL L + L +LD+ N + L L C + TL+++ P+ R +YR V LIPQL VLD
Sbjct: 66 DDLRLVSMLEMCVNTRE---SSLGSLGLHLPNLSQLKLNGSCLGSLRDLGTSLSHLQVLWLARCGLADLDGISSFPALKELYLSYNNIWDLSPLCLLEQLEVLDLEGNCV----EDLGQLRYLQLCPKLATLTLEGNPLCLRPGSGPTHQVPQGYNYRAEVRKLIPQLQVLD 230
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|555966289|ref|XP_005895197.1| (PREDICTED: leucine-rich repeat-containing protein 56 [Bos mutus]) HSP 1 Score: 101.679 bits (252), Expect = 1.704e-20 Identity = 68/172 (39.53%), Postives = 95/172 (55.23%), Query Frame = 0
Query: 78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
D LR V+ L + +T ++L +LG LP+L L SCL SLRDLG+ L HL+VL L C L LDG+++FP L+E+YLS+N + DL+PL L + L +LD+ N + L L C + TL+++ P+ R +YR V LIPQL VLD
Sbjct: 66 DDLRLVSMLEMCVNTRE---SSLGSLGLHLPNLSQLKLNGSCLGSLRDLGTSLSHLQVLWLARCGLADLDGISSFPALKELYLSYNNIWDLSPLCLLEQLEVLDLEGNCV----EDLGQLRYLQLCPKLATLTLEGNPLCLRPGSGPTHQVPQGYNYRAEVRKLIPQLQVLD 230 The following BLAST results are available for this feature:
BLAST of EWM24504.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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