EWM24504.1, cds6169 (CDS) Nannochloropsis gaditana

Overview
NameEWM24504.1
Unique Namecds6169
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:793689..794019 +
Alignment locationCM002467.1:794137..794726 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24504.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100796g3.8937.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:793689..794019 +
CM002467.1supercontigCM002467.1:794137..794726 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|553191689|ref|XP_005855433.1| (leucine rich repeat containing 56 [Nannochloropsis gaditana CCMP526] >gi|422293626|gb|EKU20926.1| leucine rich repeat containing 56 [Nannochloropsis gaditana CCMP526] >gi|585105999|gb|EWM24504.1| hypothetical protein Naga_100796g3 [Nannochloropsis gaditana])

HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0
Query:    1 MQHASKADFPANSEKIQWNERRRLAAARRLAASYSSSSLRPVSPKDNNATTLTAAWLRKHYKCASVPMWTEDTDEHEDTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVERALQNLAIGSKIDSSYRKIVGSLIPQLHVLDGKKLPKSEKDGEEQDIDEAAWRNVVLLLQKMEDEERDEEKTERWENRKADRVSKRITD 306
            MQHASKADFPANSEKIQWNERRRLAAARRLAASYSSSSLRPVSPKDNNATTLTAAWLRKHYKCASVPMWTEDTDEHEDTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVERALQNLAIGSKIDSSYRKIVGSLIPQLHVLDGKKLPKSEKDGEEQDIDEAAWRNVVLLLQKMEDEERDEEKTERWENRKADRVSKRITD
Sbjct:    1 MQHASKADFPANSEKIQWNERRRLAAARRLAASYSSSSLRPVSPKDNNATTLTAAWLRKHYKCASVPMWTEDTDEHEDTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVERALQNLAIGSKIDSSYRKIVGSLIPQLHVLDGKKLPKSEKDGEEQDIDEAAWRNVVLLLQKMEDEERDEEKTERWENRKADRVSKRITD 306          
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|594042603|ref|XP_006045833.1| (PREDICTED: leucine-rich repeat-containing protein 56 isoform X14 [Bubalus bubalis])

HSP 1 Score: 104.375 bits (259), Expect = 2.101e-21
Identity = 70/172 (40.70%), Postives = 95/172 (55.23%), Query Frame = 0
Query:   78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
            D LR V+ L +  +T     ++L +LG  LP+L    L  SCL SLRDLG+ LGHL+VL L  C L  LDG+++FP L+E+YLS+N + DL+PL L + L +LD+  N           L  L  C  + TL+++  P+  R             SYR  V  LIPQL VLD
Sbjct:   66 DDLRLVSVLEMCVNTRE---SSLGSLGLHLPNLSQLKLNGSCLGSLRDLGTSLGHLQVLWLARCGLADLDGISSFPALKELYLSYNDIWDLSPLCLLEQLEVLDLEGNCV----EDPGQLRYLQLCPRLATLTLEGNPLCLRPGSGPTHQVPQGYSYRAEVRKLIPQLQVLD 230          
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|1187629479|ref|XP_020767795.1| (leucine-rich repeat-containing protein 56 isoform X1 [Odocoileus virginianus texanus] >gi|1187629481|ref|XP_020767796.1| leucine-rich repeat-containing protein 56 isoform X1 [Odocoileus virginianus texanus] >gi|1187629483|ref|XP_020767797.1| leucine-rich repeat-containing protein 56 isoform X1 [Odocoileus virginianus texanus] >gi|1187629485|ref|XP_020767798.1| leucine-rich repeat-containing protein 56 isoform X1 [Odocoileus virginianus texanus] >gi|1187629487|ref|XP_020767799.1| leucine-rich repeat-containing protein 56 isoform X1 [Odocoileus virginianus texanus])

HSP 1 Score: 104.375 bits (259), Expect = 2.237e-21
Identity = 69/174 (39.66%), Postives = 95/174 (54.60%), Query Frame = 0
Query:   76 HEDTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
             ED L+ V+ L +  +T      +L + G  LP+L    L  SCL SLRDLG+ LGHL VL L  C L  LDG+++FP L+E+YLS+N + DL+PL L +HL +LD+  N        +  L  L  C  + TL+++  P+  R             +YR  V  LIPQL VLD
Sbjct:   64 QEDDLQLVSMLEMCVNTRE---NSLGSFGLHLPNLSQLKLNGSCLGSLRDLGTSLGHLHVLWLARCGLADLDGISSFPALKELYLSYNDIWDLSPLCLLEHLEVLDLEGNCV----EDLGQLRYLQLCPRLATLTLEGNPLCLRPGPGPTHQVPRGYNYRAEVRKLIPQLQVLD 230          
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|594042577|ref|XP_006045820.1| (PREDICTED: leucine-rich repeat-containing protein 56 isoform X1 [Bubalus bubalis] >gi|594042579|ref|XP_006045821.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X2 [Bubalus bubalis] >gi|594042581|ref|XP_006045822.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X3 [Bubalus bubalis] >gi|594042583|ref|XP_006045823.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X4 [Bubalus bubalis] >gi|594042585|ref|XP_006045824.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X5 [Bubalus bubalis] >gi|594042587|ref|XP_006045825.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X6 [Bubalus bubalis] >gi|594042589|ref|XP_006045826.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X7 [Bubalus bubalis] >gi|594042591|ref|XP_006045827.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X8 [Bubalus bubalis] >gi|594042593|ref|XP_006045828.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X9 [Bubalus bubalis] >gi|594042595|ref|XP_006045829.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X10 [Bubalus bubalis] >gi|594042597|ref|XP_006045830.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X11 [Bubalus bubalis] >gi|594042599|ref|XP_006045831.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X12 [Bubalus bubalis] >gi|594042601|ref|XP_006045832.1| PREDICTED: leucine-rich repeat-containing protein 56 isoform X13 [Bubalus bubalis])

HSP 1 Score: 103.99 bits (258), Expect = 2.559e-21
Identity = 70/172 (40.70%), Postives = 95/172 (55.23%), Query Frame = 0
Query:   78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
            D LR V+ L +  +T     ++L +LG  LP+L    L  SCL SLRDLG+ LGHL+VL L  C L  LDG+++FP L+E+YLS+N + DL+PL L + L +LD+  N           L  L  C  + TL+++  P+  R             SYR  V  LIPQL VLD
Sbjct:   66 DDLRLVSVLEMCVNTRE---SSLGSLGLHLPNLSQLKLNGSCLGSLRDLGTSLGHLQVLWLARCGLADLDGISSFPALKELYLSYNDIWDLSPLCLLEQLEVLDLEGNCV----EDPGQLRYLQLCPRLATLTLEGNPLCLRPGSGPTHQVPQGYSYRAEVRKLIPQLQVLD 230          
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|594042605|ref|XP_006045834.1| (PREDICTED: leucine-rich repeat-containing protein 56 isoform X15 [Bubalus bubalis])

HSP 1 Score: 102.834 bits (255), Expect = 3.722e-21
Identity = 70/172 (40.70%), Postives = 95/172 (55.23%), Query Frame = 0
Query:   78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
            D LR V+ L +  +T     ++L +LG  LP+L    L  SCL SLRDLG+ LGHL+VL L  C L  LDG+++FP L+E+YLS+N + DL+PL L + L +LD+  N           L  L  C  + TL+++  P+  R             SYR  V  LIPQL VLD
Sbjct:   66 DDLRLVSVLEMCVNTRE---SSLGSLGLHLPNLSQLKLNGSCLGSLRDLGTSLGHLQVLWLARCGLADLDGISSFPALKELYLSYNDIWDLSPLCLLEQLEVLDLEGNCV----EDPGQLRYLQLCPRLATLTLEGNPLCLRPGSGPTHQVPQGYSYRAEVRKLIPQLQVLD 230          
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|1048435988|ref|XP_017534333.1| (PREDICTED: leucine-rich repeat-containing protein 56 [Manis javanica])

HSP 1 Score: 103.219 bits (256), Expect = 5.443e-21
Identity = 68/178 (38.20%), Postives = 95/178 (53.37%), Query Frame = 0
Query:   78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLS-------MKETPVERALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
            D LR V+ L +  +T      +L T G  LP+L    L  SCL S+RDLG+ LGHL+VL L  C L  LDG+ +FP L+E+Y+S+N + DL+PL L + L +LD+  N        +  L  L  C  + TL+       ++ +P  +A Q          +YR  V  LIPQL VLD
Sbjct:   65 DDLRLVSMLEMCVNTRD---NSLGTFGVHLPNLRHLKLNGSCLGSVRDLGTSLGHLQVLWLARCGLTDLDGIGSFPALKELYVSYNDISDLSPLCLLEQLEVLDLEGNSV----EGLGQLRYLQLCPRLATLTLEGNLVCLQPSPCNKAPQGY--------NYRAEVRKLIPQLQVLD 227          
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|634871925|ref|XP_007947555.1| (PREDICTED: leucine-rich repeat-containing protein 56 [Orycteropus afer afer])

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-21
Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 0
Query:   99 NLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVERALQNLAIGS---KIDSSYRKIVGSLIPQLHVLD 248
            +L   G  LP+L    L  SCL+S+RDLG+ LGHL+VL L  C L  LDG+++FP L+E+Y+S+N + DL+PL L + L +LD+  N        +  +H L  C  + TL+++  PV   LQ     S       +YR  V  LIPQL VLD
Sbjct:   15 SLGNFGIHLPNLSQLKLNGSCLASVRDLGTSLGHLQVLWLACCGLPDLDGISSFPALKELYVSYNNVSDLSPLCLLEQLEVLDLEGNSV----EDLGQVHYLRLCPRLATLTLEGNPV--CLQPGPGPSNKAPQGYNYRAEVRKLIPQLQVLD 161          
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|953497187|emb|CEG41496.1| (Protein phosphatase 1, regulatory subunit, and related proteins [Plasmopara halstedii])

HSP 1 Score: 102.449 bits (254), Expect = 1.468e-20
Identity = 73/229 (31.88%), Postives = 113/229 (49.34%), Query Frame = 0
Query:   35 SSSSLRPVSPKDNNATTLTAAWLRKHYKCASVPMWTEDTDEHEDTLRNVTHLS-LTRSTD-----TPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVERALQNLAIGSKIDSSYRKIVGSLIPQLHVLDGKKLPKSEK 257
            +S SL  VSP + +        + K+ +  S+ +     D  E+ LR ++ +S L R T        +  ++E +GELLPSL+      S L S RDLG+ L  LRVL    C +  LDG+ A   L+E+YL HN + D++PL +HD + I+D+  N      +    +  LA C  + +L +   P+E   Q           YR+IV + +PQL   D K +  SE+
Sbjct:   44 ASGSLFSVSPMNKH--------INKNRRRDSIQLDNPFDDITEEKLRQLSKMSNLERVTSLHISIDSEKQSVEVIGELLPSLQQLHFQQSSLRSFRDLGTSLRSLRVLWAAQCQISNLDGIGALMNLQELYLQHNNVNDVSPLTMHDEIGIIDLEGNQM----TEFRQIEQLAFCLQLRSLKLAGNPIETVKQ-----------YRQIVANFLPQLVKFDDKIVCDSER 249          
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|440906586|gb|ELR56834.1| (Leucine-rich repeat-containing protein 56, partial [Bos mutus])

HSP 1 Score: 101.679 bits (252), Expect = 1.696e-20
Identity = 68/172 (39.53%), Postives = 95/172 (55.23%), Query Frame = 0
Query:   78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
            D LR V+ L +  +T     ++L +LG  LP+L    L  SCL SLRDLG+ L HL+VL L  C L  LDG+++FP L+E+YLS+N + DL+PL L + L +LD+  N        +  L  L  C  + TL+++  P+  R             +YR  V  LIPQL VLD
Sbjct:   66 DDLRLVSMLEMCVNTRE---SSLGSLGLHLPNLSQLKLNGSCLGSLRDLGTSLSHLQVLWLARCGLADLDGISSFPALKELYLSYNNIWDLSPLCLLEQLEVLDLEGNCV----EDLGQLRYLQLCPKLATLTLEGNPLCLRPGSGPTHQVPQGYNYRAEVRKLIPQLQVLD 230          
BLAST of EWM24504.1 vs. NCBI_GenBank
Match: gi|555966289|ref|XP_005895197.1| (PREDICTED: leucine-rich repeat-containing protein 56 [Bos mutus])

HSP 1 Score: 101.679 bits (252), Expect = 1.704e-20
Identity = 68/172 (39.53%), Postives = 95/172 (55.23%), Query Frame = 0
Query:   78 DTLRNVTHLSLTRSTDTPDITNLETLGELLPSLESFSLTHSCLSSLRDLGSRLGHLRVLDLTACNLQCLDGMAAFPLLEEVYLSHNLLRDLTPLFLHDHLTILDISHNLYLRLPSSMAPLHVLASCKNMHTLSMKETPVE-RALQNLAIGSKIDSSYRKIVGSLIPQLHVLD 248
            D LR V+ L +  +T     ++L +LG  LP+L    L  SCL SLRDLG+ L HL+VL L  C L  LDG+++FP L+E+YLS+N + DL+PL L + L +LD+  N        +  L  L  C  + TL+++  P+  R             +YR  V  LIPQL VLD
Sbjct:   66 DDLRLVSMLEMCVNTRE---SSLGSLGLHLPNLSQLKLNGSCLGSLRDLGTSLSHLQVLWLARCGLADLDGISSFPALKELYLSYNNIWDLSPLCLLEQLEVLDLEGNCV----EDLGQLRYLQLCPKLATLTLEGNPLCLRPGSGPTHQVPQGYNYRAEVRKLIPQLQVLD 230          
The following BLAST results are available for this feature:
BLAST of EWM24504.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553191689|ref|XP_005855433.1|0.000e+0100.00leucine rich repeat containing 56 [Nannochloropsis... [more]
gi|594042603|ref|XP_006045833.1|2.101e-2140.70PREDICTED: leucine-rich repeat-containing protein ... [more]
gi|1187629479|ref|XP_020767795.1|2.237e-2139.66leucine-rich repeat-containing protein 56 isoform ... [more]
gi|594042577|ref|XP_006045820.1|2.559e-2140.70PREDICTED: leucine-rich repeat-containing protein ... [more]
gi|594042605|ref|XP_006045834.1|3.722e-2140.70PREDICTED: leucine-rich repeat-containing protein ... [more]
gi|1048435988|ref|XP_017534333.1|5.443e-2138.20PREDICTED: leucine-rich repeat-containing protein ... [more]
gi|634871925|ref|XP_007947555.1|9.357e-2141.18PREDICTED: leucine-rich repeat-containing protein ... [more]
gi|953497187|emb|CEG41496.1|1.468e-2031.88Protein phosphatase 1, regulatory subunit, and rel... [more]
gi|440906586|gb|ELR56834.1|1.696e-2039.53Leucine-rich repeat-containing protein 56, partial... [more]
gi|555966289|ref|XP_005895197.1|1.704e-2039.53PREDICTED: leucine-rich repeat-containing protein ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6184rna6184Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications