EWM24512.1, cds6162 (CDS) Nannochloropsis gaditana

Overview
NameEWM24512.1
Unique Namecds6162
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:778402..779919 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24512.1
Productisoform b
Orig transcript idgnl|cribi|Naga_100560g3.2585.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:778402..779919 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|585106012|gb|EWM24512.1| (isoform b [Nannochloropsis gaditana])

HSP 1 Score: 1036.56 bits (2679), Expect = 0.000e+0
Identity = 505/505 (100.00%), Postives = 505/505 (100.00%), Query Frame = 0
Query:    1 MASGRWRVPGGRNLAKIPNVLYRASTKTNALPRKIAVTRMLAFCSCLAALGWVWSSLQLNKNYRLDRIPLSSAALRDLLSMEMQASYNLVVPHDSTSPFSLPIILSSSSHSPTTTTSSSSSSSSSSSSSSSSSSSSTPPLSREECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRCSCAFTLADRPDTRRTREEDKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVTCVERKEEGEGEEMAVRKESWERGRRKAKEGGARAGEKEGRRRRREDAEEEGKEGKGPIGGREGGREGDEGGEGKEGRIRIRVSRMQ 505
            MASGRWRVPGGRNLAKIPNVLYRASTKTNALPRKIAVTRMLAFCSCLAALGWVWSSLQLNKNYRLDRIPLSSAALRDLLSMEMQASYNLVVPHDSTSPFSLPIILSSSSHSPTTTTSSSSSSSSSSSSSSSSSSSSTPPLSREECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRCSCAFTLADRPDTRRTREEDKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVTCVERKEEGEGEEMAVRKESWERGRRKAKEGGARAGEKEGRRRRREDAEEEGKEGKGPIGGREGGREGDEGGEGKEGRIRIRVSRMQ
Sbjct:    1 MASGRWRVPGGRNLAKIPNVLYRASTKTNALPRKIAVTRMLAFCSCLAALGWVWSSLQLNKNYRLDRIPLSSAALRDLLSMEMQASYNLVVPHDSTSPFSLPIILSSSSHSPTTTTSSSSSSSSSSSSSSSSSSSSTPPLSREECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRCSCAFTLADRPDTRRTREEDKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVTCVERKEEGEGEEMAVRKESWERGRRKAKEGGARAGEKEGRRRRREDAEEEGKEGKGPIGGREGGREGDEGGEGKEGRIRIRVSRMQ 505          
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|585107348|gb|EWM25571.1| (wsc domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 182.956 bits (463), Expect = 1.674e-47
Identity = 110/284 (38.73%), Postives = 153/284 (53.87%), Query Frame = 0
Query:  143 EECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMV-FAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATK---EAKDSRRCSCAFTLA-DRPDTRRTREEDK--EVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVT 419
            EEC   Y  RRFLD N    P +LYS+PGSGNT+TRLLID +TGV++G +L    P       GQ HC   V  +KAHP  F P +L    +   C   GG++  F RFILL R+P+ AIWSEY RR    +H   +D   FD E F  VA+   ++ Y   + +F+ ++  LP  +I S+ YED+   D+  R  +L +I  F+G        +  R   CAF LA D    RR  +  K  +++  V  ++ YTPE+AC MW++         GY+ P G+T
Sbjct:  284 EECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLA-KRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFT--VTGRCNDWGGIK-AFRRFILLMRNPFDAIWSEY-RRTATEAHFFLSD--DFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDM--RMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIF-GADVKEFGYTLPNGIT 557          
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|167516342|ref|XP_001742512.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163779136|gb|EDQ92750.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 119.398 bits (298), Expect = 5.033e-25
Identity = 104/323 (32.20%), Postives = 149/323 (46.13%), Query Frame = 0
Query:  163 PAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPD---NCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRV----------------AMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRCSCAFTLADRPDTRRTREEDKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVTCVERKEEGEGEEMAVRKESWER---GRRKAKEGGARAGEKEGRRRRR 463
            P VLYS PGSGNTF R L+D ATG Y+G++    D  L ++LPG+ HC+  V  +KAHP       LL GQ P    NC         F+ F ++ RD Y A+++E+QRR       QA++P      H   +                 M  A+E V T   +E L+ +LP    L V YE L  +    R + L  +V+F+   + A D  R  CAF  +     RR ++E       +  +  +TP L C +W+L++   A  LGY P   + C       +GE    R E  +R   G     +G A+A      +RRR
Sbjct:  280 PPVLYSAPGSGNTFVRTLLDAATGYYSGSL--YLDATLIDSLPGEGHCN-HVSVVKAHPNMHSVDDLL-GQTPTLRRNCGP-------FDAFAIVIRDFYHAVFAEFQRRYVEVV--QASNPRLALNHHVSTLQWKDWDADFRFIWQDYVMRKAKESVATWAQYERLR-QLPNSTTLLVSYERLVNS--AERASELRRLVSFV-VGESAVDESRLECAFESSASGQVRRVKQESD-----LNLQGVFTPRLVCRVWQLIQP-WAEPLGYGPLFDLEC------ADGEPAPRRSEILDRFLSGTSTESDGKAKATASRNTQRRR 573          
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|514691974|ref|XP_004993560.1| (hypothetical protein PTSG_05694 [Salpingoeca rosetta] >gi|326428427|gb|EGD73997.1| hypothetical protein PTSG_05694 [Salpingoeca rosetta])

HSP 1 Score: 108.612 bits (270), Expect = 3.872e-22
Identity = 95/337 (28.19%), Postives = 163/337 (48.37%), Query Frame = 0
Query:  110 HSPTTTTSSSSSSSSSSSSSSSSSSSSTPPLSREECSLRYGARRFLDPN-----PNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAH-------PKQFRPL-KLLAGQLPDN--CQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFD--PE-HFGRVAMVFAQEYVTTLENFEFLKTK---LPRHDILSVKYEDLTTTDVLTREAVLHDIVTF-LGATKEAK----DSRRCSCAFTLADRPDTRRTREEDKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVTC 420
            H+   T++S S + S+ +   ++S+         EC  R+  RR++ P      P+  P +L + PGSGNT+ R+L+++ TG ++ ++   ND +L E +PG+  CD++ I +K+H       P+ +  L K+  G+L     C+    LR  F+  I + RDP+ A  +E  R+L  G H      + F   P+    R  +   + +   ++ ++ L      + R+ IL +++ED+T+   L +   L  ++ F LG   E+           C F+LAD     RT   D      V+ EE  TPE+ C MW ++ +  A    Y PP G+TC
Sbjct:   73 HNHHFTSNSESDTDSNGNGEDAASTDEQADEEAREC--RHVGRRYVTPEDRARLPHAKPPLLLTLPGSGNTWFRMLLEYGTGFFSSSV--YNDFKLKEVMPGELRCDNTTIVVKSHMHLGSYDPEVYNKLFKMQPGELAHGYPCRE---LRP-FDSVIGIIRDPFHAALAEATRQL-TGGHASGISRSRFHNMPQSDIARRLVTQCEMWAHYMKEYQRLLRDGFVVARNFIL-IRFEDMTSP--LLKHDTLGRLLRFVLGPDMESPLGPLTKPTLDCIFSLADDVHVHRTHGPD-----VVSAEEVLTPEIVCKMWAVVRQFAAA-FDYRPPFGITC 391          
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|551542921|ref|XP_005759647.1| (Hypothetical protein EMIHUDRAFT_198564 [Emiliania huxleyi CCMP1516] >gi|485607774|gb|EOD07218.1| Hypothetical protein EMIHUDRAFT_198564 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 92.0485 bits (227), Expect = 5.447e-17
Identity = 85/302 (28.15%), Postives = 121/302 (40.07%), Query Frame = 0
Query:  152 RRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEG--GLRQG--------------FERFILLSRDPYAAIWSEYQR---------------------RLNNGSHHQAADPAA-FDPEHFGRVAMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRCSCAFTLADRPDTRRTREE-DKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSP 414
            R+F  P     P +L+++PGSGNT+ RLL+D ATG YTG++   +D  L   LPG+  CDS  +A+KAHP              D  +  G  G R                F+  ++L+RDPYA+IW+EY+R                      L +   H    PAA F+  HF   A+  A+ +      + + K       +  + YE+L   +   R   L  +V F                   AD P   R R + D   + A       +  L CDMW L     A   GY P
Sbjct:    8 RQFRQPGSGALPPLLWTFPGSGNTWLRLLLDFATGTYTGSV--YSDVSLLPLLPGEGTCDSRALAVKAHPTNV--------DFHDFVRTPGEPGFRLNVTRKPAYLKCAPLRFDALVMLTRDPYASIWAEYKRALAYAEGVGRAPVVATSSCRAALRSQHLHSGGLPAACFNATHFSTFALHQARAWRHMW--YHYRKAAALGLRVHRLAYENL--LEPRGRLGALARLVEF-------------------ADDPRVHRGRHQRDGSPQLASAASAYASSGLVCDMWHLF-GAKAKAAGYRP 275          
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|514687587|ref|XP_004991370.1| (hypothetical protein PTSG_07574 [Salpingoeca rosetta] >gi|326430885|gb|EGD76455.1| hypothetical protein PTSG_07574 [Salpingoeca rosetta])

HSP 1 Score: 92.0485 bits (227), Expect = 7.556e-16
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 0
Query:  121 SSSSSSSSSSSSSSSSTPPLSR-EECSLRYGARRFLDP-NPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQG---FERFILLSRDPYAAIWSEYQRRLN 271
            S+  +++++ S  S   P L + +    R   R FL P   +  PA+L+S PGSGNT TRLLI++ATG  TG+  G  D  L + LPG+  CDSSVIA+K HP                 + E G+  G   F R I+L R+P  AIW++YQR ++
Sbjct:   42 SAPITAAAADSRLSDGQPSLLQCDHSDSRLRQRHFLPPAQQHKAPALLWSQPGSGNTMTRLLIEYATGYLTGSPYG--DKSLLDVLPGEDTCDSSVIAVKLHPLINPRRTNKEDHYTATFKREHGVCDGVSVFARAIILVRNPLDAIWADYQRFIS 195          
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|551536757|ref|XP_005757047.1| (hypothetical protein EMIHUDRAFT_259515 [Emiliania huxleyi CCMP1516] >gi|485604204|gb|EOD04618.1| hypothetical protein EMIHUDRAFT_259515 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.1738 bits (178), Expect = 1.917e-12
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0
Query:  152 RRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQ 223
            R+F  P     P +L+++PGSGNT+ RLL+D ATG YTG++   +D  L   LPG+  CDS  +A+KAHP  
Sbjct:    8 RQFRQPGSGALPPLLWTFPGSGNTWLRLLLDFATGTYTGSV--YSDVSLLPLLPGEGTCDSRALAVKAHPTN 77          
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|906457313|gb|KNC20787.1| (WSCD family member, partial [Lucilia cuprina])

HSP 1 Score: 77.0258 bits (188), Expect = 6.764e-12
Identity = 65/226 (28.76%), Postives = 103/226 (45.58%), Query Frame = 0
Query:  128 SSSSSSSSSTPPLSREECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAH---PKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMVFAQEYVTT-LENFEFLKTKLPRH---DILSVKYEDLTTTDVLTREAVLHDIVTFL 346
            ++ ++S   TP +S  E +++ G               L S+PGSGNT+ R L+  +TG+ TG+I   +   L    PG++ C+SSV+ +K H   PK + P                     F + ILL RDP  AI +E+ R+  +G H   A      P+ + R    + Q++VT  L  +E +     R+   ++  V Y+DL        E VL  I+ FL
Sbjct:   82 TADAASEFKTPNISDNEENIKTGL------------TALASFPGSGNTWLRYLLQQSTGILTGSIYK-DYGLLKTGFPGENICNSSVLLVKTHEWGPKAWAP---------------------FSKAILLVRDPEKAIIAEFNRQ--SGGHVGFA-----SPDRYKRTKGKYWQQFVTNKLRGWELMNLNWARNFTGNVKIVFYDDLVN----NLEPVLRSILEFL 262          
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|443722665|gb|ELU11425.1| (hypothetical protein CAPTEDRAFT_193827 [Capitella teleta])

HSP 1 Score: 75.0998 bits (183), Expect = 3.367e-11
Identity = 65/197 (32.99%), Postives = 95/197 (48.22%), Query Frame = 0
Query:  166 LYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQR-RLNNGSH---HQAADPAAFDPEHFGRVAMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRC 358
            L S+PGSGNT+TR LI+ +TG YTGAI    D  L +A PG+ +   SVIA+K H  +FR +                 R  +ER +L++R P  A+ +E+ R R  N SH    Q  +  A+  +       V   EY     +F F  TK    D+L + Y+D+      T    L ++  FLG + + +D   C
Sbjct:  103 LASFPGSGNTWTRHLIELSTGFYTGAIY--KDGLLKKAFPGEGNRSRSVIAVKTHWPRFRTVD----------------RVEYERVVLITRTPLDAMKAEFTRQRTPNRSHVGQIQTVNQTAWQNQ-----VKVQIPEY-QRFYDFWFDITKKKSMDLLVLFYDDMRDNTTQT----LINLAHFLGIS-DIRDQLPC 270          
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|557776369|ref|XP_005187825.1| (PREDICTED: WSCD family member CG9164 [Musca domestica])

HSP 1 Score: 74.7146 bits (182), Expect = 4.446e-11
Identity = 61/198 (30.81%), Postives = 93/198 (46.97%), Query Frame = 0
Query:  156 DPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAH---PKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMVFAQEYVTT-LENFEFLKTKLPRH---DILSVKYEDLTTTDVLTREAVLHDIVTFL 346
            D N       L S+PGSGNT+ R L+  +TG+ TG+I   +   L    PG++ C+SSV+ +K H   PK + P                     F + ILL RDP  AI +E+ R+  +G H   A      P+ + R    + Q++VT  L  +E +     ++   ++  V Y+DL    V   E+VL  I+ FL
Sbjct:   95 DDNSKTGLTALASFPGSGNTWLRYLLQQSTGILTGSIYK-DYGLLKTGFPGENVCNSSVLLVKTHEWGPKAWAP---------------------FSKAILLVRDPEKAIIAEFNRQ--SGGHVGFA-----SPDRYKRTKGKYWQQFVTNKLRGWELMNLNWAKNFTGNVKIVFYDDL----VNNVESVLRSILDFL 259          
The following BLAST results are available for this feature:
BLAST of EWM24512.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106012|gb|EWM24512.1|0.000e+0100.00isoform b [Nannochloropsis gaditana][more]
gi|585107348|gb|EWM25571.1|1.674e-4738.73wsc domain containing 1 [Nannochloropsis gaditana][more]
gi|167516342|ref|XP_001742512.1|5.033e-2532.20hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|514691974|ref|XP_004993560.1|3.872e-2228.19hypothetical protein PTSG_05694 [Salpingoeca roset... [more]
gi|551542921|ref|XP_005759647.1|5.447e-1728.15Hypothetical protein EMIHUDRAFT_198564 [Emiliania ... [more]
gi|514687587|ref|XP_004991370.1|7.556e-1639.10hypothetical protein PTSG_07574 [Salpingoeca roset... [more]
gi|551536757|ref|XP_005757047.1|1.917e-1247.22hypothetical protein EMIHUDRAFT_259515 [Emiliania ... [more]
gi|906457313|gb|KNC20787.1|6.764e-1228.76WSCD family member, partial [Lucilia cuprina][more]
gi|443722665|gb|ELU11425.1|3.367e-1132.99hypothetical protein CAPTEDRAFT_193827 [Capitella ... [more]
gi|557776369|ref|XP_005187825.1|4.446e-1130.81PREDICTED: WSCD family member CG9164 [Musca domest... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6177rna6177Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications