EWM24512.1, cds6162 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|585106012|gb|EWM24512.1| (isoform b [Nannochloropsis gaditana]) HSP 1 Score: 1036.56 bits (2679), Expect = 0.000e+0 Identity = 505/505 (100.00%), Postives = 505/505 (100.00%), Query Frame = 0
Query: 1 MASGRWRVPGGRNLAKIPNVLYRASTKTNALPRKIAVTRMLAFCSCLAALGWVWSSLQLNKNYRLDRIPLSSAALRDLLSMEMQASYNLVVPHDSTSPFSLPIILSSSSHSPTTTTSSSSSSSSSSSSSSSSSSSSTPPLSREECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRCSCAFTLADRPDTRRTREEDKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVTCVERKEEGEGEEMAVRKESWERGRRKAKEGGARAGEKEGRRRRREDAEEEGKEGKGPIGGREGGREGDEGGEGKEGRIRIRVSRMQ 505
MASGRWRVPGGRNLAKIPNVLYRASTKTNALPRKIAVTRMLAFCSCLAALGWVWSSLQLNKNYRLDRIPLSSAALRDLLSMEMQASYNLVVPHDSTSPFSLPIILSSSSHSPTTTTSSSSSSSSSSSSSSSSSSSSTPPLSREECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRCSCAFTLADRPDTRRTREEDKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVTCVERKEEGEGEEMAVRKESWERGRRKAKEGGARAGEKEGRRRRREDAEEEGKEGKGPIGGREGGREGDEGGEGKEGRIRIRVSRMQ
Sbjct: 1 MASGRWRVPGGRNLAKIPNVLYRASTKTNALPRKIAVTRMLAFCSCLAALGWVWSSLQLNKNYRLDRIPLSSAALRDLLSMEMQASYNLVVPHDSTSPFSLPIILSSSSHSPTTTTSSSSSSSSSSSSSSSSSSSSTPPLSREECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRCSCAFTLADRPDTRRTREEDKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVTCVERKEEGEGEEMAVRKESWERGRRKAKEGGARAGEKEGRRRRREDAEEEGKEGKGPIGGREGGREGDEGGEGKEGRIRIRVSRMQ 505
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|585107348|gb|EWM25571.1| (wsc domain containing 1 [Nannochloropsis gaditana]) HSP 1 Score: 182.956 bits (463), Expect = 1.674e-47 Identity = 110/284 (38.73%), Postives = 153/284 (53.87%), Query Frame = 0
Query: 143 EECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMV-FAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATK---EAKDSRRCSCAFTLA-DRPDTRRTREEDK--EVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVT 419
EEC Y RRFLD N P +LYS+PGSGNT+TRLLID +TGV++G +L P GQ HC V +KAHP F P +L + C GG++ F RFILL R+P+ AIWSEY RR +H +D FD E F VA+ ++ Y + +F+ ++ LP +I S+ YED+ D+ R +L +I F+G + R CAF LA D RR + K +++ V ++ YTPE+AC MW++ GY+ P G+T
Sbjct: 284 EECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLA-KRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFT--VTGRCNDWGGIK-AFRRFILLMRNPFDAIWSEY-RRTATEAHFFLSD--DFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDM--RMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIF-GADVKEFGYTLPNGIT 557
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|167516342|ref|XP_001742512.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163779136|gb|EDQ92750.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 119.398 bits (298), Expect = 5.033e-25 Identity = 104/323 (32.20%), Postives = 149/323 (46.13%), Query Frame = 0
Query: 163 PAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPD---NCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRV----------------AMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRCSCAFTLADRPDTRRTREEDKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVTCVERKEEGEGEEMAVRKESWER---GRRKAKEGGARAGEKEGRRRRR 463
P VLYS PGSGNTF R L+D ATG Y+G++ D L ++LPG+ HC+ V +KAHP LL GQ P NC F+ F ++ RD Y A+++E+QRR QA++P H + M A+E V T +E L+ +LP L V YE L + R + L +V+F+ + A D R CAF + RR ++E + + +TP L C +W+L++ A LGY P + C +GE R E +R G +G A+A +RRR
Sbjct: 280 PPVLYSAPGSGNTFVRTLLDAATGYYSGSL--YLDATLIDSLPGEGHCN-HVSVVKAHPNMHSVDDLL-GQTPTLRRNCGP-------FDAFAIVIRDFYHAVFAEFQRRYVEVV--QASNPRLALNHHVSTLQWKDWDADFRFIWQDYVMRKAKESVATWAQYERLR-QLPNSTTLLVSYERLVNS--AERASELRRLVSFV-VGESAVDESRLECAFESSASGQVRRVKQESD-----LNLQGVFTPRLVCRVWQLIQP-WAEPLGYGPLFDLEC------ADGEPAPRRSEILDRFLSGTSTESDGKAKATASRNTQRRR 573
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|514691974|ref|XP_004993560.1| (hypothetical protein PTSG_05694 [Salpingoeca rosetta] >gi|326428427|gb|EGD73997.1| hypothetical protein PTSG_05694 [Salpingoeca rosetta]) HSP 1 Score: 108.612 bits (270), Expect = 3.872e-22 Identity = 95/337 (28.19%), Postives = 163/337 (48.37%), Query Frame = 0
Query: 110 HSPTTTTSSSSSSSSSSSSSSSSSSSSTPPLSREECSLRYGARRFLDPN-----PNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAH-------PKQFRPL-KLLAGQLPDN--CQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFD--PE-HFGRVAMVFAQEYVTTLENFEFLKTK---LPRHDILSVKYEDLTTTDVLTREAVLHDIVTF-LGATKEAK----DSRRCSCAFTLADRPDTRRTREEDKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSPPPGVTC 420
H+ T++S S + S+ + ++S+ EC R+ RR++ P P+ P +L + PGSGNT+ R+L+++ TG ++ ++ ND +L E +PG+ CD++ I +K+H P+ + L K+ G+L C+ LR F+ I + RDP+ A +E R+L G H + F P+ R + + + ++ ++ L + R+ IL +++ED+T+ L + L ++ F LG E+ C F+LAD RT D V+ EE TPE+ C MW ++ + A Y PP G+TC
Sbjct: 73 HNHHFTSNSESDTDSNGNGEDAASTDEQADEEAREC--RHVGRRYVTPEDRARLPHAKPPLLLTLPGSGNTWFRMLLEYGTGFFSSSV--YNDFKLKEVMPGELRCDNTTIVVKSHMHLGSYDPEVYNKLFKMQPGELAHGYPCRE---LRP-FDSVIGIIRDPFHAALAEATRQL-TGGHASGISRSRFHNMPQSDIARRLVTQCEMWAHYMKEYQRLLRDGFVVARNFIL-IRFEDMTSP--LLKHDTLGRLLRFVLGPDMESPLGPLTKPTLDCIFSLADDVHVHRTHGPD-----VVSAEEVLTPEIVCKMWAVVRQFAAA-FDYRPPFGITC 391
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|551542921|ref|XP_005759647.1| (Hypothetical protein EMIHUDRAFT_198564 [Emiliania huxleyi CCMP1516] >gi|485607774|gb|EOD07218.1| Hypothetical protein EMIHUDRAFT_198564 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 92.0485 bits (227), Expect = 5.447e-17 Identity = 85/302 (28.15%), Postives = 121/302 (40.07%), Query Frame = 0
Query: 152 RRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEG--GLRQG--------------FERFILLSRDPYAAIWSEYQR---------------------RLNNGSHHQAADPAA-FDPEHFGRVAMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRCSCAFTLADRPDTRRTREE-DKEVRKAVTREEAYTPELACDMWELLEEGGAGRLGYSP 414
R+F P P +L+++PGSGNT+ RLL+D ATG YTG++ +D L LPG+ CDS +A+KAHP D + G G R F+ ++L+RDPYA+IW+EY+R L + H PAA F+ HF A+ A+ + + + K + + YE+L + R L +V F AD P R R + D + A + L CDMW L A GY P
Sbjct: 8 RQFRQPGSGALPPLLWTFPGSGNTWLRLLLDFATGTYTGSV--YSDVSLLPLLPGEGTCDSRALAVKAHPTNV--------DFHDFVRTPGEPGFRLNVTRKPAYLKCAPLRFDALVMLTRDPYASIWAEYKRALAYAEGVGRAPVVATSSCRAALRSQHLHSGGLPAACFNATHFSTFALHQARAWRHMW--YHYRKAAALGLRVHRLAYENL--LEPRGRLGALARLVEF-------------------ADDPRVHRGRHQRDGSPQLASAASAYASSGLVCDMWHLF-GAKAKAAGYRP 275
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|514687587|ref|XP_004991370.1| (hypothetical protein PTSG_07574 [Salpingoeca rosetta] >gi|326430885|gb|EGD76455.1| hypothetical protein PTSG_07574 [Salpingoeca rosetta]) HSP 1 Score: 92.0485 bits (227), Expect = 7.556e-16 Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 0
Query: 121 SSSSSSSSSSSSSSSSTPPLSR-EECSLRYGARRFLDP-NPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQG---FERFILLSRDPYAAIWSEYQRRLN 271
S+ +++++ S S P L + + R R FL P + PA+L+S PGSGNT TRLLI++ATG TG+ G D L + LPG+ CDSSVIA+K HP + E G+ G F R I+L R+P AIW++YQR ++
Sbjct: 42 SAPITAAAADSRLSDGQPSLLQCDHSDSRLRQRHFLPPAQQHKAPALLWSQPGSGNTMTRLLIEYATGYLTGSPYG--DKSLLDVLPGEDTCDSSVIAVKLHPLINPRRTNKEDHYTATFKREHGVCDGVSVFARAIILVRNPLDAIWADYQRFIS 195
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|551536757|ref|XP_005757047.1| (hypothetical protein EMIHUDRAFT_259515 [Emiliania huxleyi CCMP1516] >gi|485604204|gb|EOD04618.1| hypothetical protein EMIHUDRAFT_259515 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 73.1738 bits (178), Expect = 1.917e-12 Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0
Query: 152 RRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQ 223
R+F P P +L+++PGSGNT+ RLL+D ATG YTG++ +D L LPG+ CDS +A+KAHP
Sbjct: 8 RQFRQPGSGALPPLLWTFPGSGNTWLRLLLDFATGTYTGSV--YSDVSLLPLLPGEGTCDSRALAVKAHPTN 77
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|906457313|gb|KNC20787.1| (WSCD family member, partial [Lucilia cuprina]) HSP 1 Score: 77.0258 bits (188), Expect = 6.764e-12 Identity = 65/226 (28.76%), Postives = 103/226 (45.58%), Query Frame = 0
Query: 128 SSSSSSSSSTPPLSREECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAH---PKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMVFAQEYVTT-LENFEFLKTKLPRH---DILSVKYEDLTTTDVLTREAVLHDIVTFL 346
++ ++S TP +S E +++ G L S+PGSGNT+ R L+ +TG+ TG+I + L PG++ C+SSV+ +K H PK + P F + ILL RDP AI +E+ R+ +G H A P+ + R + Q++VT L +E + R+ ++ V Y+DL E VL I+ FL
Sbjct: 82 TADAASEFKTPNISDNEENIKTGL------------TALASFPGSGNTWLRYLLQQSTGILTGSIYK-DYGLLKTGFPGENICNSSVLLVKTHEWGPKAWAP---------------------FSKAILLVRDPEKAIIAEFNRQ--SGGHVGFA-----SPDRYKRTKGKYWQQFVTNKLRGWELMNLNWARNFTGNVKIVFYDDLVN----NLEPVLRSILEFL 262
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|443722665|gb|ELU11425.1| (hypothetical protein CAPTEDRAFT_193827 [Capitella teleta]) HSP 1 Score: 75.0998 bits (183), Expect = 3.367e-11 Identity = 65/197 (32.99%), Postives = 95/197 (48.22%), Query Frame = 0
Query: 166 LYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQR-RLNNGSH---HQAADPAAFDPEHFGRVAMVFAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLGATKEAKDSRRC 358
L S+PGSGNT+TR LI+ +TG YTGAI D L +A PG+ + SVIA+K H +FR + R +ER +L++R P A+ +E+ R R N SH Q + A+ + V EY +F F TK D+L + Y+D+ T L ++ FLG + + +D C
Sbjct: 103 LASFPGSGNTWTRHLIELSTGFYTGAIY--KDGLLKKAFPGEGNRSRSVIAVKTHWPRFRTVD----------------RVEYERVVLITRTPLDAMKAEFTRQRTPNRSHVGQIQTVNQTAWQNQ-----VKVQIPEY-QRFYDFWFDITKKKSMDLLVLFYDDMRDNTTQT----LINLAHFLGIS-DIRDQLPC 270
BLAST of EWM24512.1 vs. NCBI_GenBank
Match: gi|557776369|ref|XP_005187825.1| (PREDICTED: WSCD family member CG9164 [Musca domestica]) HSP 1 Score: 74.7146 bits (182), Expect = 4.446e-11 Identity = 61/198 (30.81%), Postives = 93/198 (46.97%), Query Frame = 0
Query: 156 DPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAH---PKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMVFAQEYVTT-LENFEFLKTKLPRH---DILSVKYEDLTTTDVLTREAVLHDIVTFL 346
D N L S+PGSGNT+ R L+ +TG+ TG+I + L PG++ C+SSV+ +K H PK + P F + ILL RDP AI +E+ R+ +G H A P+ + R + Q++VT L +E + ++ ++ V Y+DL V E+VL I+ FL
Sbjct: 95 DDNSKTGLTALASFPGSGNTWLRYLLQQSTGILTGSIYK-DYGLLKTGFPGENVCNSSVLLVKTHEWGPKAWAP---------------------FSKAILLVRDPEKAIIAEFNRQ--SGGHVGFA-----SPDRYKRTKGKYWQQFVTNKLRGWELMNLNWAKNFTGNVKIVFYDDL----VNNVESVLRSILDFL 259 The following BLAST results are available for this feature:
BLAST of EWM24512.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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