EWM24516.1, cds6158 (CDS) Nannochloropsis gaditana

Overview
NameEWM24516.1
Unique Namecds6158
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:772119..772199 -
Alignment locationCM002467.1:771809..771925 -
Alignment locationCM002467.1:770937..771557 -
Alignment locationCM002467.1:770629..770754 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24516.1
ProductEndonuclease/exonuclease/phosphatase
Orig transcript idgnl|cribi|Naga_100678g2.3068.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:772119..772199 -
CM002467.1supercontigCM002467.1:771809..771925 -
CM002467.1supercontigCM002467.1:770937..771557 -
CM002467.1supercontigCM002467.1:770629..770754 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Homology
[Close]
BLAST of EWM24516.1 vs. NCBI_GenBank
Match: gi|585106018|gb|EWM24516.1| (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0 
Query:    1 MKLSDGAETKGESSTQTDGGRRKQTFRVLTYNVWIAPLVRWNPIENLEAICKFIESLDVDIVCLQEAFDWRLGPMGFLCETLWGGGASFGPLSWFFYVEGLLFPVSQTCHQKRIIEALLPSLPHHLPSAPIPFGRGHNQGLLVLSKHPLHRPLRQYLTCTPVHHMGFQAFTVAPLPREGRGKGGEAGAREDIRFVNLHLVPNFHTHPWKGRVLGWLGERDVPRMQAKQLAEIGEEVGREGGKEGGTGGRAWCVVGDFNVHRPRVLGVGSLVDQVTCPQEQHILDHFVSPLPYNYQVFADNTLSDHYPVLATFAL 314
            MKLSDGAETKGESSTQTDGGRRKQTFRVLTYNVWIAPLVRWNPIENLEAICKFIESLDVDIVCLQEAFDWRLGPMGFLCETLWGGGASFGPLSWFFYVEGLLFPVSQTCHQKRIIEALLPSLPHHLPSAPIPFGRGHNQGLLVLSKHPLHRPLRQYLTCTPVHHMGFQAFTVAPLPREGRGKGGEAGAREDIRFVNLHLVPNFHTHPWKGRVLGWLGERDVPRMQAKQLAEIGEEVGREGGKEGGTGGRAWCVVGDFNVHRPRVLGVGSLVDQVTCPQEQHILDHFVSPLPYNYQVFADNTLSDHYPVLATFAL
Sbjct:    1 MKLSDGAETKGESSTQTDGGRRKQTFRVLTYNVWIAPLVRWNPIENLEAICKFIESLDVDIVCLQEAFDWRLGPMGFLCETLWGGGASFGPLSWFFYVEGLLFPVSQTCHQKRIIEALLPSLPHHLPSAPIPFGRGHNQGLLVLSKHPLHRPLRQYLTCTPVHHMGFQAFTVAPLPREGRGKGGEAGAREDIRFVNLHLVPNFHTHPWKGRVLGWLGERDVPRMQAKQLAEIGEEVGREGGKEGGTGGRAWCVVGDFNVHRPRVLGVGSLVDQVTCPQEQHILDHFVSPLPYNYQVFADNTLSDHYPVLATFAL 314
The following BLAST results are available for this feature:
BLAST of EWM24516.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106018|gb|EWM24516.1|0.000e+0100.00Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6173rna6173Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications