EWM24517.1, cds6156 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|585106019|gb|EWM24517.1| (ubiquitin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 240.35 bits (612), Expect = 3.892e-80 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 Query: 1 MTDPNTVRAMLQLQRAGIIPNMGPSGVPSPFPPNGPPPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLFM 125 MTDPNTVRAMLQLQRAGIIPNMGPSGVPSPFPPNGPPPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLFM Sbjct: 1 MTDPNTVRAMLQLQRAGIIPNMGPSGVPSPFPPNGPPPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLFM 125
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|470323430|ref|XP_004349488.1| (ubiquitin family protein [Capsaspora owczarzaki ATCC 30864] >gi|765551004|gb|KJE91625.1| ubiquitin family protein [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 72.7886 bits (177), Expect = 1.454e-12 Identity = 56/131 (42.75%), Postives = 67/131 (51.15%), Query Frame = 0 Query: 1 MTDPNTVRAMLQLQRA-------GIIPNMGPSGVPSPFPPNGPPPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124 MTDPNT+RAM+Q+Q+A G++PNM G G G G G G A G AP G + P PA RF QLQQL+DMGF DE N++AL + GNVNAAIERL Sbjct: 404 MTDPNTLRAMIQMQQAMGQLAQVGLLPNMNEMGGLGGLGGLGGGGFGGFGDFGLGNA-----------------GGAPTGGATTTPAQPPAERFRVQLQQLQDMGFYDEETNIRALTLSQGNVNAAIERLL 517
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|513019875|ref|XP_004871231.1| (ubiquilin-4 isoform X3 [Heterocephalus glaber]) HSP 1 Score: 70.4774 bits (171), Expect = 1.065e-11 Identity = 51/151 (33.77%), Postives = 71/151 (47.02%), Query Frame = 0 Query: 1 MTDPNTVRAMLQLQRA---------GIIPNMGPSGVPSPFPPNGPPPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMP------------------VADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124 +T+P ++A+LQ+Q+ G++P++G G+P P PS G+ G +AP + + PTGPPS P V P RF QL+QL MGF + NLQAL AT G++NAAIERL Sbjct: 460 LTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGMP-----RTPAPSAGSTSGSTAEAP----------TSSPAMAATSPTGPPSAPQQLMQQMIQLLAGSGDSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLL 595
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|1032297130|gb|OAP11456.1| (hypothetical protein AXX17_AT2G12360 [Arabidopsis thaliana]) HSP 1 Score: 65.855 bits (159), Expect = 1.762e-11 Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 0 Query: 39 SQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124 + AGQ GA L+N G +G G T ++P P R+A QLQQL++MGF D A N++AL ATNGNVNAA+ERL Sbjct: 23 CRDAGQTGAATGNNGGLDLLMNMFGSLGAGGLSGTNQSNVP---PEERYATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLL 105
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|1032293680|gb|OAP08006.1| (hypothetical protein AXX17_AT2G12340 [Arabidopsis thaliana]) HSP 1 Score: 65.0846 bits (157), Expect = 2.584e-11 Identity = 42/87 (48.28%), Postives = 52/87 (59.77%), Query Frame = 0 Query: 38 PSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124 P+Q G LD L+N G +G G T P++P P RFA QLQQL++MGF D A N++AL ATNGNVNAA+ERL Sbjct: 11 PTQTGAATGTANNGGLDL--LMNMFGSLGAGGLSGTNQPNVP---PEERFATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLL 92
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|727416517|ref|XP_010515470.1| (PREDICTED: ubiquitin domain-containing protein DSK2b isoform X2 [Camelina sativa]) HSP 1 Score: 68.9366 bits (167), Expect = 3.219e-11 Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 0 Query: 39 SQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124 SQ GQ GA AL+N G +G G T P++P P R+A QLQQL++MGF D A N++AL ATNGNVNAA+ERL Sbjct: 475 SQDPGQTGAATGNNAGLDALMNMFGSLGAGGLSGTNQPNVP---PEERYATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLL 557
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|727588940|ref|XP_010467473.1| (PREDICTED: ubiquitin domain-containing protein DSK2b isoform X2 [Camelina sativa]) HSP 1 Score: 68.5514 bits (166), Expect = 4.834e-11 Identity = 43/86 (50.00%), Postives = 52/86 (60.47%), Query Frame = 0 Query: 39 SQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124 SQ GQ GA L+N G +G G T P++P P RFA QLQQL++MGF D A N++AL ATNGNVNAA+ERL Sbjct: 472 SQDPGQTGAATGNNAGLDVLMNMFGSLGAGGLSGTNQPNVP---PEERFATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLL 554
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|1160556887|ref|XP_020436340.1| (UAS domain-containing protein [Polysphondylium pallidum PN500] >gi|281210056|gb|EFA84224.1| UAS domain-containing protein [Polysphondylium pallidum PN500]) HSP 1 Score: 68.1662 bits (165), Expect = 5.972e-11 Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0 Query: 83 PATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124 PA RF QLQQL DMGF DEA N++ALQATNGNVNAAIERL Sbjct: 449 PAQRFQVQLQQLNDMGFIDEADNIRALQATNGNVNAAIERLL 490
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|1109027059|ref|XP_019083789.1| (PREDICTED: ubiquitin domain-containing protein DSK2a-like [Camelina sativa]) HSP 1 Score: 68.1662 bits (165), Expect = 6.850e-11 Identity = 47/100 (47.00%), Postives = 57/100 (57.00%), Query Frame = 0 Query: 29 SPFPPNGPPPSQGAGQGGAGQAPP----LDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124 S F N Q AGQ GA +DF L+N G +G G T P++P P RFA QLQQL++MGF D A N++AL TNGNVNAA+ERL Sbjct: 458 SLFSQNRTTAGQDAGQTGAATGTANNGGMDF--LMNMFGSLGAGGLSGTNQPNVP---PEERFATQLQQLQEMGFYDRAENIRALLVTNGNVNAAVERLL 552
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|727636443|ref|XP_010489337.1| (PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X2 [Camelina sativa] >gi|1109094849|ref|XP_019096811.1| PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X1 [Camelina sativa] >gi|1109094852|ref|XP_019096812.1| PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X3 [Camelina sativa]) HSP 1 Score: 67.0106 bits (162), Expect = 1.822e-10 Identity = 44/88 (50.00%), Postives = 54/88 (61.36%), Query Frame = 0 Query: 37 PPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124 P GA G G LD AL+N G +G G T P++P P R+A QLQQL++MGF D A N++AL ATNGNVNAA+ERL Sbjct: 466 PGQTGAATVGTGNNAGLD--ALMNMFGSLGAGGLSGTNQPNVP---PEERYATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLL 548 The following BLAST results are available for this feature:
BLAST of EWM24517.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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