EWM24517.1, cds6156 (CDS) Nannochloropsis gaditana

Overview
NameEWM24517.1
Unique Namecds6156
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:767073..767134 +
Alignment locationCM002467.1:767343..767502 +
Alignment locationCM002467.1:767665..767763 +
Alignment locationCM002467.1:767975..768031 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24517.1
Productubiquitin-like protein
Orig transcript idgnl|cribi|Naga_100678g5.3069.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:767073..767134 +
CM002467.1supercontigCM002467.1:767343..767502 +
CM002467.1supercontigCM002467.1:767665..767763 +
CM002467.1supercontigCM002467.1:767975..768031 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
IPR015496Ubiquilin
IPR000449UBA/Ts_N
IPR015940UBA/transl_elong_EF1B_N_euk
Homology
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|585106019|gb|EWM24517.1| (ubiquitin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 240.35 bits (612), Expect = 3.892e-80
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 MTDPNTVRAMLQLQRAGIIPNMGPSGVPSPFPPNGPPPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLFM 125
            MTDPNTVRAMLQLQRAGIIPNMGPSGVPSPFPPNGPPPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLFM
Sbjct:    1 MTDPNTVRAMLQLQRAGIIPNMGPSGVPSPFPPNGPPPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLFM 125          
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|470323430|ref|XP_004349488.1| (ubiquitin family protein [Capsaspora owczarzaki ATCC 30864] >gi|765551004|gb|KJE91625.1| ubiquitin family protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 72.7886 bits (177), Expect = 1.454e-12
Identity = 56/131 (42.75%), Postives = 67/131 (51.15%), Query Frame = 0
Query:    1 MTDPNTVRAMLQLQRA-------GIIPNMGPSGVPSPFPPNGPPPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124
            MTDPNT+RAM+Q+Q+A       G++PNM   G        G     G G  G G A                 G AP  G  + P   PA RF  QLQQL+DMGF DE  N++AL  + GNVNAAIERL 
Sbjct:  404 MTDPNTLRAMIQMQQAMGQLAQVGLLPNMNEMGGLGGLGGLGGGGFGGFGDFGLGNA-----------------GGAPTGGATTTPAQPPAERFRVQLQQLQDMGFYDEETNIRALTLSQGNVNAAIERLL 517          
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|513019875|ref|XP_004871231.1| (ubiquilin-4 isoform X3 [Heterocephalus glaber])

HSP 1 Score: 70.4774 bits (171), Expect = 1.065e-11
Identity = 51/151 (33.77%), Postives = 71/151 (47.02%), Query Frame = 0
Query:    1 MTDPNTVRAMLQLQRA---------GIIPNMGPSGVPSPFPPNGPPPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMP------------------VADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124
            +T+P  ++A+LQ+Q+          G++P++G  G+P       P PS G+  G   +AP               + +  PTGPPS P                  V  P  RF  QL+QL  MGF +   NLQAL AT G++NAAIERL 
Sbjct:  460 LTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGMP-----RTPAPSAGSTSGSTAEAP----------TSSPAMAATSPTGPPSAPQQLMQQMIQLLAGSGDSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLL 595          
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|1032297130|gb|OAP11456.1| (hypothetical protein AXX17_AT2G12360 [Arabidopsis thaliana])

HSP 1 Score: 65.855 bits (159), Expect = 1.762e-11
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 0
Query:   39 SQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124
             + AGQ GA          L+N  G +G G    T   ++P   P  R+A QLQQL++MGF D A N++AL ATNGNVNAA+ERL 
Sbjct:   23 CRDAGQTGAATGNNGGLDLLMNMFGSLGAGGLSGTNQSNVP---PEERYATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLL 105          
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|1032293680|gb|OAP08006.1| (hypothetical protein AXX17_AT2G12340 [Arabidopsis thaliana])

HSP 1 Score: 65.0846 bits (157), Expect = 2.584e-11
Identity = 42/87 (48.28%), Postives = 52/87 (59.77%), Query Frame = 0
Query:   38 PSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124
            P+Q     G      LD   L+N  G +G G    T  P++P   P  RFA QLQQL++MGF D A N++AL ATNGNVNAA+ERL 
Sbjct:   11 PTQTGAATGTANNGGLDL--LMNMFGSLGAGGLSGTNQPNVP---PEERFATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLL 92          
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|727416517|ref|XP_010515470.1| (PREDICTED: ubiquitin domain-containing protein DSK2b isoform X2 [Camelina sativa])

HSP 1 Score: 68.9366 bits (167), Expect = 3.219e-11
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 0
Query:   39 SQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124
            SQ  GQ GA         AL+N  G +G G    T  P++P   P  R+A QLQQL++MGF D A N++AL ATNGNVNAA+ERL 
Sbjct:  475 SQDPGQTGAATGNNAGLDALMNMFGSLGAGGLSGTNQPNVP---PEERYATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLL 557          
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|727588940|ref|XP_010467473.1| (PREDICTED: ubiquitin domain-containing protein DSK2b isoform X2 [Camelina sativa])

HSP 1 Score: 68.5514 bits (166), Expect = 4.834e-11
Identity = 43/86 (50.00%), Postives = 52/86 (60.47%), Query Frame = 0
Query:   39 SQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124
            SQ  GQ GA          L+N  G +G G    T  P++P   P  RFA QLQQL++MGF D A N++AL ATNGNVNAA+ERL 
Sbjct:  472 SQDPGQTGAATGNNAGLDVLMNMFGSLGAGGLSGTNQPNVP---PEERFATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLL 554          
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|1160556887|ref|XP_020436340.1| (UAS domain-containing protein [Polysphondylium pallidum PN500] >gi|281210056|gb|EFA84224.1| UAS domain-containing protein [Polysphondylium pallidum PN500])

HSP 1 Score: 68.1662 bits (165), Expect = 5.972e-11
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0
Query:   83 PATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124
            PA RF  QLQQL DMGF DEA N++ALQATNGNVNAAIERL 
Sbjct:  449 PAQRFQVQLQQLNDMGFIDEADNIRALQATNGNVNAAIERLL 490          
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|1109027059|ref|XP_019083789.1| (PREDICTED: ubiquitin domain-containing protein DSK2a-like [Camelina sativa])

HSP 1 Score: 68.1662 bits (165), Expect = 6.850e-11
Identity = 47/100 (47.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   29 SPFPPNGPPPSQGAGQGGAGQAPP----LDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124
            S F  N     Q AGQ GA         +DF  L+N  G +G G    T  P++P   P  RFA QLQQL++MGF D A N++AL  TNGNVNAA+ERL 
Sbjct:  458 SLFSQNRTTAGQDAGQTGAATGTANNGGMDF--LMNMFGSLGAGGLSGTNQPNVP---PEERFATQLQQLQEMGFYDRAENIRALLVTNGNVNAAVERLL 552          
BLAST of EWM24517.1 vs. NCBI_GenBank
Match: gi|727636443|ref|XP_010489337.1| (PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X2 [Camelina sativa] >gi|1109094849|ref|XP_019096811.1| PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X1 [Camelina sativa] >gi|1109094852|ref|XP_019096812.1| PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X3 [Camelina sativa])

HSP 1 Score: 67.0106 bits (162), Expect = 1.822e-10
Identity = 44/88 (50.00%), Postives = 54/88 (61.36%), Query Frame = 0
Query:   37 PPSQGAGQGGAGQAPPLDFSALLNQMGPMGLGSAPPTGPPSMPVADPATRFAPQLQQLRDMGFTDEARNLQALQATNGNVNAAIERLF 124
            P   GA   G G    LD  AL+N  G +G G    T  P++P   P  R+A QLQQL++MGF D A N++AL ATNGNVNAA+ERL 
Sbjct:  466 PGQTGAATVGTGNNAGLD--ALMNMFGSLGAGGLSGTNQPNVP---PEERYATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLL 548          
The following BLAST results are available for this feature:
BLAST of EWM24517.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106019|gb|EWM24517.1|3.892e-80100.00ubiquitin-like protein [Nannochloropsis gaditana][more]
gi|470323430|ref|XP_004349488.1|1.454e-1242.75ubiquitin family protein [Capsaspora owczarzaki AT... [more]
gi|513019875|ref|XP_004871231.1|1.065e-1133.77ubiquilin-4 isoform X3 [Heterocephalus glaber][more]
gi|1032297130|gb|OAP11456.1|1.762e-1146.51hypothetical protein AXX17_AT2G12360 [Arabidopsis ... [more]
gi|1032293680|gb|OAP08006.1|2.584e-1148.28hypothetical protein AXX17_AT2G12340 [Arabidopsis ... [more]
gi|727416517|ref|XP_010515470.1|3.219e-1150.00PREDICTED: ubiquitin domain-containing protein DSK... [more]
gi|727588940|ref|XP_010467473.1|4.834e-1150.00PREDICTED: ubiquitin domain-containing protein DSK... [more]
gi|1160556887|ref|XP_020436340.1|5.972e-1178.57UAS domain-containing protein [Polysphondylium pal... [more]
gi|1109027059|ref|XP_019083789.1|6.850e-1147.00PREDICTED: ubiquitin domain-containing protein DSK... [more]
gi|727636443|ref|XP_010489337.1|1.822e-1050.00PREDICTED: ubiquitin domain-containing protein DSK... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6171rna6171Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications