EWM24519.1, cds6154 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24519.1 vs. NCBI_GenBank
Match: gi|585106023|gb|EWM24519.1| (plectin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 778.089 bits (2008), Expect = 0.000e+0 Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0
Query: 1 MRDSRPPPPSAGTSSPYLRLPPLLQDRHLKELVDLRAEHTHLLERANEEQAKLLEGVQQELERRTEAFELYRARAHTALKRGANEQRDHDVKVEKMRARMMEVEEKLVEMERERKRDKQALKEVGEEASDRAQALRTAMAEAEVRPRPPLDGSLGSVDAEEAFIQAARVQSRRDEEVKRLTQQVQGLQVRIREREEAMQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVPVICTILRFSQSETLEVQQAVTGVGAGSALPATIGALSTFFWGGGGGGGGGGGGGGSSVSRQAHPHLITPRRQSTSMTEESPSITSSSSSSASLGTGGAGRGGEEGRGRSREGLREGMRERNAEAPAEKEGEGGTSILESQEL 394
MRDSRPPPPSAGTSSPYLRLPPLLQDRHLKELVDLRAEHTHLLERANEEQAKLLEGVQQELERRTEAFELYRARAHTALKRGANEQRDHDVKVEKMRARMMEVEEKLVEMERERKRDKQALKEVGEEASDRAQALRTAMAEAEVRPRPPLDGSLGSVDAEEAFIQAARVQSRRDEEVKRLTQQVQGLQVRIREREEAMQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVPVICTILRFSQSETLEVQQAVTGVGAGSALPATIGALSTFFWGGGGGGGGGGGGGGSSVSRQAHPHLITPRRQSTSMTEESPSITSSSSSSASLGTGGAGRGGEEGRGRSREGLREGMRERNAEAPAEKEGEGGTSILESQEL
Sbjct: 1 MRDSRPPPPSAGTSSPYLRLPPLLQDRHLKELVDLRAEHTHLLERANEEQAKLLEGVQQELERRTEAFELYRARAHTALKRGANEQRDHDVKVEKMRARMMEVEEKLVEMERERKRDKQALKEVGEEASDRAQALRTAMAEAEVRPRPPLDGSLGSVDAEEAFIQAARVQSRRDEEVKRLTQQVQGLQVRIREREEAMQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVPVICTILRFSQSETLEVQQAVTGVGAGSALPATIGALSTFFWGGGGGGGGGGGGGGSSVSRQAHPHLITPRRQSTSMTEESPSITSSSSSSASLGTGGAGRGGEEGRGRSREGLREGMRERNAEAPAEKEGEGGTSILESQEL 394
BLAST of EWM24519.1 vs. NCBI_GenBank
Match: gi|553177678|ref|XP_005852486.1| (hypothetical protein NGA_0721100, partial [Nannochloropsis gaditana CCMP526] >gi|422296047|gb|EKU23346.1| hypothetical protein NGA_0721100, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 114.775 bits (286), Expect = 2.676e-28 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
Query: 198 MQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVP 252
MQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVP
Sbjct: 1 MQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVP 55
BLAST of EWM24519.1 vs. NCBI_GenBank
Match: gi|299470616|emb|CBN80238.1| (hypothetical protein Esi_0131_0074 [Ectocarpus siliculosus]) HSP 1 Score: 72.4034 bits (176), Expect = 7.081e-10 Identity = 54/134 (40.30%), Postives = 73/134 (54.48%), Query Frame = 0
Query: 146 PRPPLDGSLGSVDAEEAFIQAARVQSRRDEEVKRLTQQVQGL--QVRIREREEAMQD----------MDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVPVICTILRFSQSETLE 267
+ P + S AE+ +Q ARVQ++RDEE RL +Q L ++R RE E A +D D QG AA + L + G E ++TYLKN V R++ S G+ER LVPV+ TIL FS +ET E
Sbjct: 2709 SKQPQQTAAESHHAEQQILQMARVQAQRDEETGRLRVNIQRLADEIRAREEELAARDDEKEELRKRVEDLQGEAARAKELLDDATGPE---KMTYLKNVVKRFVMSD---GTERQRLVPVVATILSFSPAETSE 2836
BLAST of EWM24519.1 vs. NCBI_GenBank
Match: gi|168016370|ref|XP_001760722.1| (predicted protein [Physcomitrella patens] >gi|162688082|gb|EDQ74461.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 62.7734 bits (151), Expect = 5.900e-7 Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 0
Query: 146 PRPPLDGSLGSVDAEEAFIQAARVQSRRDEEVKRLTQQVQGLQVRIREREEAMQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVPVICTILRFSQSETLEVQQAVTGVGAGSALP 282
P PPL AE+ + AR+Q++++EEV R + ++ LQ I+ERE+ + Q E+ SER K + +TY+KN + + L E G E AL+PVI +L+FS E Q+A + A + +P
Sbjct: 544 PPPPL--------AEQQILILARLQAQKEEEVARCLRHIEALQEEIKEREQENRLRCHQITILKEEYHNSERNQKRSTVDMTYVKNVILKLL----ETG-EVEALLPVIAMLLQFSPDEMHRCQEAY-NMRASAEVP 666 The following BLAST results are available for this feature:
BLAST of EWM24519.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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