EWM24519.1, cds6154 (CDS) Nannochloropsis gaditana

Overview
NameEWM24519.1
Unique Namecds6154
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:762156..762589 +
Alignment locationCM002467.1:762968..763718 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24519.1
Productplectin-like protein
Orig transcript idgnl|cribi|Naga_100447g2.3128.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:762156..762589 +
CM002467.1supercontigCM002467.1:762968..763718 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000237GRIP
Homology
BLAST of EWM24519.1 vs. NCBI_GenBank
Match: gi|585106023|gb|EWM24519.1| (plectin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 778.089 bits (2008), Expect = 0.000e+0
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0
Query:    1 MRDSRPPPPSAGTSSPYLRLPPLLQDRHLKELVDLRAEHTHLLERANEEQAKLLEGVQQELERRTEAFELYRARAHTALKRGANEQRDHDVKVEKMRARMMEVEEKLVEMERERKRDKQALKEVGEEASDRAQALRTAMAEAEVRPRPPLDGSLGSVDAEEAFIQAARVQSRRDEEVKRLTQQVQGLQVRIREREEAMQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVPVICTILRFSQSETLEVQQAVTGVGAGSALPATIGALSTFFWGGGGGGGGGGGGGGSSVSRQAHPHLITPRRQSTSMTEESPSITSSSSSSASLGTGGAGRGGEEGRGRSREGLREGMRERNAEAPAEKEGEGGTSILESQEL 394
            MRDSRPPPPSAGTSSPYLRLPPLLQDRHLKELVDLRAEHTHLLERANEEQAKLLEGVQQELERRTEAFELYRARAHTALKRGANEQRDHDVKVEKMRARMMEVEEKLVEMERERKRDKQALKEVGEEASDRAQALRTAMAEAEVRPRPPLDGSLGSVDAEEAFIQAARVQSRRDEEVKRLTQQVQGLQVRIREREEAMQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVPVICTILRFSQSETLEVQQAVTGVGAGSALPATIGALSTFFWGGGGGGGGGGGGGGSSVSRQAHPHLITPRRQSTSMTEESPSITSSSSSSASLGTGGAGRGGEEGRGRSREGLREGMRERNAEAPAEKEGEGGTSILESQEL
Sbjct:    1 MRDSRPPPPSAGTSSPYLRLPPLLQDRHLKELVDLRAEHTHLLERANEEQAKLLEGVQQELERRTEAFELYRARAHTALKRGANEQRDHDVKVEKMRARMMEVEEKLVEMERERKRDKQALKEVGEEASDRAQALRTAMAEAEVRPRPPLDGSLGSVDAEEAFIQAARVQSRRDEEVKRLTQQVQGLQVRIREREEAMQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVPVICTILRFSQSETLEVQQAVTGVGAGSALPATIGALSTFFWGGGGGGGGGGGGGGSSVSRQAHPHLITPRRQSTSMTEESPSITSSSSSSASLGTGGAGRGGEEGRGRSREGLREGMRERNAEAPAEKEGEGGTSILESQEL 394          
BLAST of EWM24519.1 vs. NCBI_GenBank
Match: gi|553177678|ref|XP_005852486.1| (hypothetical protein NGA_0721100, partial [Nannochloropsis gaditana CCMP526] >gi|422296047|gb|EKU23346.1| hypothetical protein NGA_0721100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.775 bits (286), Expect = 2.676e-28
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
Query:  198 MQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVP 252
            MQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVP
Sbjct:    1 MQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVP 55          
BLAST of EWM24519.1 vs. NCBI_GenBank
Match: gi|299470616|emb|CBN80238.1| (hypothetical protein Esi_0131_0074 [Ectocarpus siliculosus])

HSP 1 Score: 72.4034 bits (176), Expect = 7.081e-10
Identity = 54/134 (40.30%), Postives = 73/134 (54.48%), Query Frame = 0
Query:  146 PRPPLDGSLGSVDAEEAFIQAARVQSRRDEEVKRLTQQVQGL--QVRIREREEAMQD----------MDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVPVICTILRFSQSETLE 267
             + P   +  S  AE+  +Q ARVQ++RDEE  RL   +Q L  ++R RE E A +D           D QG AA  +  L +  G E   ++TYLKN V R++ S    G+ER  LVPV+ TIL FS +ET E
Sbjct: 2709 SKQPQQTAAESHHAEQQILQMARVQAQRDEETGRLRVNIQRLADEIRAREEELAARDDEKEELRKRVEDLQGEAARAKELLDDATGPE---KMTYLKNVVKRFVMSD---GTERQRLVPVVATILSFSPAETSE 2836          
BLAST of EWM24519.1 vs. NCBI_GenBank
Match: gi|168016370|ref|XP_001760722.1| (predicted protein [Physcomitrella patens] >gi|162688082|gb|EDQ74461.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 62.7734 bits (151), Expect = 5.900e-7
Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 0
Query:  146 PRPPLDGSLGSVDAEEAFIQAARVQSRRDEEVKRLTQQVQGLQVRIREREEAMQDMDAQGRAAAREWELSERGGKEAQDRLTYLKNAVYRYLRSPPEAGSERAALVPVICTILRFSQSETLEVQQAVTGVGAGSALP 282
            P PPL        AE+  +  AR+Q++++EEV R  + ++ LQ  I+ERE+  +    Q      E+  SER  K +   +TY+KN + + L    E G E  AL+PVI  +L+FS  E    Q+A   + A + +P
Sbjct:  544 PPPPL--------AEQQILILARLQAQKEEEVARCLRHIEALQEEIKEREQENRLRCHQITILKEEYHNSERNQKRSTVDMTYVKNVILKLL----ETG-EVEALLPVIAMLLQFSPDEMHRCQEAY-NMRASAEVP 666          
The following BLAST results are available for this feature:
BLAST of EWM24519.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585106023|gb|EWM24519.1|0.000e+0100.00plectin-like protein [Nannochloropsis gaditana][more]
gi|553177678|ref|XP_005852486.1|2.676e-28100.00hypothetical protein NGA_0721100, partial [Nannoch... [more]
gi|299470616|emb|CBN80238.1|7.081e-1040.30hypothetical protein Esi_0131_0074 [Ectocarpus sil... [more]
gi|168016370|ref|XP_001760722.1|5.900e-733.58predicted protein [Physcomitrella patens] >gi|1626... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6169rna6169Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications