EWM24532.1, cds6135 (CDS) Nannochloropsis gaditana

Overview
NameEWM24532.1
Unique Namecds6135
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:704177..705469 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24532.1
ProductRNA binding protein
Orig transcript idgnl|cribi|Naga_100175g2.9487.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:704177..705469 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM24532.1 vs. NCBI_GenBank
Match: gi|585106040|gb|EWM24532.1| (RNA binding protein [Nannochloropsis gaditana])

HSP 1 Score: 851.277 bits (2198), Expect = 0.000e+0
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0
Query:    1 MGGGGGIRPGPKGVSIGGISHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGGVPPTAPVPGGGAGGGYGGGGGGSYSGGRPAGGYGGGGYSGSTYGSGGGGGYGQASYGGSSYGGSSGYGGYGGDYQQSSGSYYQGGYGSSGGGYGSSGGGYAGGYGRY 430
            MGGGGGIRPGPKGVSIGGISHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGGVPPTAPVPGGGAGGGYGGGGGGSYSGGRPAGGYGGGGYSGSTYGSGGGGGYGQASYGGSSYGGSSGYGGYGGDYQQSSGSYYQGGYGSSGGGYGSSGGGYAGGYGRY
Sbjct:    1 MGGGGGIRPGPKGVSIGGISHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGGVPPTAPVPGGGAGGGYGGGGGGSYSGGRPAGGYGGGGYSGSTYGSGGGGGYGQASYGGSSYGGSSGYGGYGGDYQQSSGSYYQGGYGSSGGGYGSSGGGYAGGYGRY 430          
BLAST of EWM24532.1 vs. NCBI_GenBank
Match: gi|553187532|ref|XP_005854630.1| (rna binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294428|gb|EKU21728.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0
Identity = 269/270 (99.63%), Postives = 270/270 (100.00%), Query Frame = 0
Query:   39 HFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAAS 308
            HFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAA+
Sbjct:  303 HFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAAA 572          

HSP 2 Score: 110.153 bits (274), Expect = 2.064e-22
Identity = 83/295 (28.14%), Postives = 139/295 (47.12%), Query Frame = 0
Query:   22 VIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREAL--NKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVI--GLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEV 312
            V+R+RGLP+  T  D+  FF+  G    G+   +   GR+SG+A+VV  +    + AL  DK+K+G RW+D+F S   E+                                     A +F S     +G+F     DGR +GEA+V+  + E   A R+AL  +KQ M +RW+D++ +  G++++    + +   A      YA       ++RG+P   T  ++  +F   +V   G++I   + GR TGEAY  F + +D   A    R+ +    + +R I++  ASK +V
Sbjct:  220 VVRMRGLPYSATEKDILAFFSGFGVAEGGVHMHYDHMGRASGQAYVVFETVPEAQHALKLDKEKIGERWIDLFLSSKPEMLH-----------------------------------AHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQE---AVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVG-YAG----VLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAA----REALNKQTMNNRWIDLYLASKGDV 467          

HSP 3 Score: 97.0561 bits (240), Expect = 4.496e-18
Identity = 83/307 (27.04%), Postives = 133/307 (43.32%), Query Frame = 0
Query:   22 VIRVRGLPFDCTRMDLQHFFASVG------PTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDI-------FESHPGELFSRVGAAAV---------------------TLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGL--QVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYM 292
            ++R+ GLP+ C+  D+Q+F   +G      P A+    +  +D  SSGEA V + S E    AL     ++G R++DI       FE+ P      + A A                      +L   +     GV++MRGLP+  T  D+  +F  + VA  GV +     GR +G+AYV+FET  +A  A + L+K+ +  RWIDL+L+SK          P +  AH                              FFA +     G++      GR++GEA+    S +  +QA+ +++  M
Sbjct:   90 ILRLSGLPWKCSVADVQNFLKHIGVSTRPDPAAD----IKILDD-SSGEALVRVGSAEEEETALKLKVGRLGKRFVDIGSTTEEAFEATPATSEEAMNAPATVVPDAATATGEAGDGTAGEASSLTVPESSTPQGVVRMRGLPYSATEKDILAFFSGFGVAEGGVHMHYDHMGRASGQAYVVFETVPEAQHALK-LDKEKIGERWIDLFLSSK----------PEMLHAH------------------------------FFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKM 350          

HSP 4 Score: 75.8702 bits (185), Expect = 4.437e-11
Identity = 56/188 (29.79%), Postives = 95/188 (50.53%), Query Frame = 0
Query:    8 RPGPKGVSIG-----GISHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQE---AVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYA------------GVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPED 175
            R G   V++G     G + V+++RGLPF  T  D+  +F S     +G+F     DGR +GEA+V+  + E   A R+AL  +KQ M +RW+D++ +  G++++    + +       VG A               ++RG+P   T  ++  +F   +V   G++I   + GR TGEAY  F + +D
Sbjct:  368 RVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREAL--NKQTMNNRWIDLYLASKGDVYTSTVHSPI-------VGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVI--GLYICRDSSGRATGEAYAEFGSLDD 544          
BLAST of EWM24532.1 vs. NCBI_GenBank
Match: gi|553188131|ref|XP_005854740.1| (rna binding protein [Nannochloropsis gaditana CCMP526] >gi|422294318|gb|EKU21618.1| rna binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 530.791 bits (1366), Expect = 0.000e+0
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
Query:   35 MDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSR 287
            MDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSR
Sbjct:    1 MDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSR 253          

HSP 2 Score: 75.485 bits (184), Expect = 1.466e-11
Identity = 56/188 (29.79%), Postives = 97/188 (51.60%), Query Frame = 0
Query:    8 RPGPKGVSIG-----GISHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQE---AVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVT--------LGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAA 179
            R G   V++G     G + V+++RGLPF  T  D+  +F S     +G+F     DGR +GEA+V+  + E   A R+AL  +KQ M +RW+D++ +  G++++    + +         + A   +  A   ++RG+P   T  ++  +F   +V   G++I   + GR TGEAY  F + +D   A
Sbjct:   70 RVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREAL--NKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCA---RLRGVPSTVTEEELFRFFAGLQVI--GLYICRDSSGRATGEAYAEFGSLDDCQQA 250          
BLAST of EWM24532.1 vs. NCBI_GenBank
Match: gi|298710505|emb|CBJ25569.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 283.878 bits (725), Expect = 1.703e-85
Identity = 148/337 (43.92%), Postives = 210/337 (62.31%), Query Frame = 0
Query:   22 VIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGG---------------------VPPTAPVPGGGAGG 337
            V+R+RGLPF+ T+  ++ FF  +    + IF V R DG++SGEAFV+  ++    +AL++DK+K+G RW+D+F ++ G L+ RVG   V + AK D  + GVL+MRGLPF + V ++ T+F  Y+V  HGVF+  G D RPTGE+YV+F++ ++A  A +AL+KQ + +RWI+L+ ++KGD+YT+TV S ++G   GG  +Y   PMTC +LRG+P  VTE  +F FF GL VIG +IC+D   R TGE + EF ++DDCQ AMSRNR+ M      DR +EV A SKE+VLQ I    T                               GGG GG
Sbjct:  249 VVRMRGLPFEATKSQIRAFFDGINVKESNIFIVTRPDGKASGEAFVLFSTEAEAEKALLKDKEKLGDRWIDLFATNKGALYQRVGVG-VKMAAKPDAEFRGVLRMRGLPFASGVEEIRTFFRGYKVQEHGVFVVNGGDWRPTGESYVLFDSEDEAERAFKALDKQKIGDRWIELFRSTKGDLYTATVRSTVLGMERGGA-MYGREPMTCVKLRGLPFNVTENNIFSFFEGLTVIGSFICKDVMARPTGEGFVEFATVDDCQLAMSRNRESMM-----DRYVEVFATSKEDVLQQIGASGTAANGGNRGGGYGGGGNGGGRGYGGGGGQVGGGGGGGG 578          

HSP 2 Score: 168.703 bits (426), Expect = 1.697e-42
Identity = 106/311 (34.08%), Postives = 160/311 (51.45%), Query Frame = 0
Query:   12 KGVSIGGISHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRV-------GAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMT----CARLRGVPSTVTEEELFRFFAGLQVI--GLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASK 309
            KG   GG   V+R+RGLP+     D+++FF  +    +GI      DGR SGEA+VV  ++EA ++AL +DK K+G RW+DIFE+  GE++S             V+    D   Y GV++MRGLPF+ T   +  +F    V    +FI    DG+ +GEA+V+F T  +A  A    +K+ + +RWIDL+  +KG +Y          Q  G     A  P        R+RG+P     EE+  FF G +V   G+++      R TGE+Y  F S D+ ++A       +    +GDR IE+  ++K
Sbjct:  132 KGHGDGGYKGVVRMRGLPWSANEGDIRNFFDGIAIEKDGIHVTLNRDGRPSGEAYVVFETEEAAKEALKRDKDKIGERWIDIFEATKGEVYSMTGGGGKKGDQGGVSFDTTDS-AYTGVVRMRGLPFEATKSQIRAFFDGINVKESNIFIVTRPDGKASGEAFVLFSTEAEAEKAL-LKDKEKLGDRWIDLFATNKGALY----------QRVGVGVKMAAKPDAEFRGVLRMRGLPFASGVEEIRTFFRGYKVQEHGVFVVNGGDWRPTGESYVLFDSEDEAERAFK----ALDKQKIGDRWIELFRSTK 426          

HSP 3 Score: 157.532 bits (397), Expect = 1.823e-38
Identity = 95/295 (32.20%), Postives = 162/295 (54.92%), Query Frame = 0
Query:   20 SHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREAL--NKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMT-CARLRGVPSTVTEEELFRFFAGLQVI--GLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASK 309
            +H + +RGLP++ +  +L  FFA +      I  VH     S GEA+V L ++  +  AL +D+  +G R++++F S   ++        V+     D GY GV++MRGLP+     D+  +F    +   G+ +T+  DGRP+GEAYV+FET E   AA+EAL  +K  +  RWID++ A+KG+VY+ T      G   G      ++  T   R+RG+P   T+ ++  FF G+ V    ++I     G+A+GEA+  F +  + ++A+ ++++ +     GDR I++ A +K
Sbjct:   45 THAVHLRGLPWNASTKELVDFFAPMDVEDGDIHLVH----NSRGEAYVKLKNESDLETALKKDRNTIGRRYIEVFRSSIEDV--EHALDDVSSKGHGDGGYKGVVRMRGLPWSANEGDIRNFFDGIAIEKDGIHVTLNRDGRPSGEAYVVFETEE---AAKEALKRDKDKIGERWIDIFEATKGEVYSMTGGGGKKGDQGGVSFDTTDSAYTGVVRMRGLPFEATKSQIRAFFDGINVKESNIFIVTRPDGKASGEAFVLFSTEAEAEKALLKDKEKL-----GDRWIDLFATNK 325          
BLAST of EWM24532.1 vs. NCBI_GenBank
Match: gi|731325687|ref|XP_010673643.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H [Beta vulgaris subsp. vulgaris] >gi|870863333|gb|KMT14497.1| hypothetical protein BVRB_4g072690 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 161.77 bits (408), Expect = 5.957e-42
Identity = 103/312 (33.01%), Postives = 168/312 (53.85%), Query Frame = 0
Query:   22 VIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRV--------------GAAAVTLGA-KDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAG--LQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLI 316
            V+R+RGLPFDCT  D+Q F    G     I FVH+  GR SGEA+ VL     V  AL +++Q +G R++++F S   E +  +              G+ A +    K+ + + G+L++RGLPF     D+  +F  + +A   + IT  + GRP+GEA+V F  PED+  A    +K T+ +R+++L+ AS+ D+  +        Q     PV     +   ++RG+P + T+E++  FF G  L    ++I   S GR TGEA+ EF S +D + AM ++R       +G R IE+ A+S+E++ + +
Sbjct:   70 VVRLRGLPFDCTEADVQEFLR--GLDLVDILFVHK-GGRFSGEAYCVLGYPMQVDFALQRNRQNIGRRYVEVFRSKRHEYYKAITNEVADASGVSPHRGSRAKSYDEGKELLEHTGILRLRGLPFSARREDIKKFFKDFVLADDVIHITYNSAGRPSGEAFVEFPGPEDSRGAM-VKDKMTLGSRYVELFPASREDMAEAIAKGRANSQDDLNEPVKHTGVL---KMRGLPFSATKEDIIEFFDGFVLSEDSIHITSMSDGRPTGEAFVEFASAEDSEAAMEKDR-----KTLGSRYIELFASSQEDLNEAL 369          
BLAST of EWM24532.1 vs. NCBI_GenBank
Match: gi|922852462|gb|KOO21150.1| (epithelial splicing regulatory protein 2 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 166.777 bits (421), Expect = 3.147e-41
Identity = 134/431 (31.09%), Postives = 204/431 (47.33%), Query Frame = 0
Query:   22 VIRVRGLPFDCTRMDLQHFFASVGPTA--NGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYA--------GVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREAL--NKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTC----ARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGGVPPTAPVPGGGAGGGYGGGGGGSYSGGRPAGGYG-GGGYSGSTYGSGGG---GGYGQASYGGSSYGGSSGYGGYGGDYQQSSGSYYQ--GGYGSSGGGYGSSGGGYAGGYGRY 430
            V+R+RGLPF  +  D+  FF S  PT   + +  + + DGRSSG+A+ V  ++EA  +AL  DKQK+GSRW+D+F+S+ GEL+S      + LG     G           V+K+RGLP+  T+ ++A +     +   GV +  G +GRP+G AYV   + ED    +EAL  +KQ++  R+ID++  S+ ++          G   GG P  + +  T      +LRG+P  + E+++  FF  L V+ + I  + S + +G  Y +F + +D  QA+ R                    + +  LQ + + +                          +SG    GGY  GGGY G+ Y    G      G  SY      G+  Y G  G Y QS+G Y Q  GGYG   GGYG + G    GYG +
Sbjct:  789 VLRMRGLPFSTSPEDILVFFGS-PPTLQLSNVHLMRKADGRSSGDAYAVFDTEEAAVEALQYDKQKLGSRWVDLFQSNKGELYSLTSLGGIMLGQDAQAGSPVAALGDGYWVVKLRGLPWSVTLENIAIFLNGITIPKGGVHLMNGVNGRPSGLAYVELSSEED---QKEALCRDKQSIGGRYIDVFACSQTELQARLAG----GLERGGLPGNSGSSSTADAHFVKLRGLPYQINEQQISAFFQPLFVVAVQIAFNPSRQPSGFGYVQFRTPEDTTQALHR--------------------TNQAALQTLAMRQ-------------------------HHSGYTQQGGYASGGGYHGAEYAVANGALSAANGNGSYAAGYGSGADVYSGTAGGYGQSTGGYAQGSGGYGQVAGGYGPTAGSGGAGYGTH 1166          

HSP 2 Score: 147.517 bits (371), Expect = 1.158e-34
Identity = 107/337 (31.75%), Postives = 179/337 (53.12%), Query Frame = 0
Query:   21 HVIRVRGLPFDCTRMDLQHFFASVGPTAN--GIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGS-YRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTST-VHSPIVGQ-AHGGCPVYANTP-MTCARLRGVPSTVTEEELFRFFAGLQVI--GLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGGVPPTAPVPGGGAGGGYGGGGGGSYSG 349
            H+ R+RGLP++    ++  F ++V        +  +H     ++GEAFV L +   + + L  + Q++G R+++IF S+  E  +       T+  +DD  Y GVL+MRGLPF T+  D+  +FGS   +    V +   ADGR +G+AY +F+T E AV A +  +KQ + +RW+DL+ ++KG++Y+ T +   ++GQ A  G PV A        +LRG+P +VT E +  F  G+ +   G+++    +GR +G AY E  S +D ++A+ R++       +G R I+V A S+ E+               A + GG   GG  G  G S + 
Sbjct:  691 HIARLRGLPWNYGIKEVCEFLSNVNVNLQPAAVTMLHN----AAGEAFVTLSTAAQLGEVLQANHQEIGRRYVEIFTSNSEEKQAACERNRATM--RDDADYRGVLRMRGLPFSTSPEDILVFFGSPPTLQLSNVHLMRKADGRSSGDAYAVFDTEEAAVEALQ-YDKQKLGSRWVDLFQSNKGELYSLTSLGGIMLGQDAQAGSPVAALGDGYWVVKLRGLPWSVTLENIAIFLNGITIPKGGVHLMNGVNGRPSGLAYVELSSEEDQKEALCRDKQ-----SIGGRYIDVFACSQTEL--------------QARLAGGLERGGLPGNSGSSSTA 1001          
BLAST of EWM24532.1 vs. NCBI_GenBank
Match: gi|902221772|gb|KNA19007.1| (hypothetical protein SOVF_065660 [Spinacia oleracea])

HSP 1 Score: 158.303 bits (399), Expect = 1.124e-40
Identity = 101/312 (32.37%), Postives = 166/312 (53.21%), Query Frame = 0
Query:   22 VIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFS--------------RVGAAAVTLGA-KDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVI--GLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLI 316
            V+R+RGLPFDCT  D+Q F    G     I FVH+  GR SGEAF VL     V  AL +++Q +G R++++F     + +               R G+ A +    K+ + + G+L++RGLPF     D+  +F  + +A + + IT  + GRP+GEA+V F  PED+ AA    +K T+ +R+++L+ A + ++  +        Q     PV     +   +LRG+P + T+EE+  FF G  +    ++I     GR TGEA+ EF   +D + AM ++R       +G R IE+ A+S+E++ + +
Sbjct:   77 VVRLRGLPFDCTEADVQEFLR--GLDLVDILFVHK-GGRFSGEAFCVLGYPMQVDFALQRNRQNVGRRYVEVFRGKRHDYYKAIANEVSDASGVSPRRGSRAKSHDEGKEQLEHTGILRLRGLPFSARREDIKNFFKDFVLADNVIHITYNSAGRPSGEAFVEFPGPEDSRAAM-VKDKMTLGSRYVELFPAFREEMDEAIAKGRANSQDDLNEPVKHTGVL---KLRGLPFSATKEEIIEFFNGFVLTEDSVHITSMPDGRPTGEAFVEFAGPEDSEAAMEKDR-----KSLGSRYIELFASSQEDLSEAL 376          
BLAST of EWM24532.1 vs. NCBI_GenBank
Match: gi|661876690|emb|CDP19319.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 157.147 bits (396), Expect = 2.566e-40
Identity = 97/309 (31.39%), Postives = 168/309 (54.37%), Query Frame = 0
Query:   22 VIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAA-----------AVTLGA-----KDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAG--LQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEV 312
            V+R+RGLPFDCT  D+  FF ++      + FVH+  G+ +GEAF VL     V  AL +++Q +G R++++F S   E +  +              AV         KD   + G L+MRGLPF  +  D+  +F  + ++   + IT  +DGRPTGEAYV F +PED+ AA  + ++ T+ +R+I+L+ +S+ ++  +     ++ ++  G  +    P    R+RG+P +  ++++  FF    L    +++  +  GR TGEA+ EF S +D + A++++R       +G R IE+  +S EE+
Sbjct:   63 VVRLRGLPFDCTEADIAEFFHNLD--VIDVLFVHK-GGKFTGEAFSVLGYPLQVDFALQRNRQNIGRRYVEVFRSRKDEYYKAIANEVSDARGGSPRRAVPRARSFDEGKDLAEHTGFLRMRGLPFSASKEDIIDFFKDFVLSEEKISITATSDGRPTGEAYVEFASPEDSRAAM-SRDRMTLGSRYIELFPSSREELDEAISRGGLLPKSADGKDL--TVPTGVLRMRGLPFSAGKDDIMEFFKDFVLSEDSIHVTFNFEGRPTGEAFVEFASPEDAKAALAKDR-----MTLGSRYIELFPSSLEEL 360          
BLAST of EWM24532.1 vs. NCBI_GenBank
Match: gi|747085153|ref|XP_011090021.1| (RNA-binding protein sym-2 isoform X1 [Sesamum indicum])

HSP 1 Score: 155.992 bits (393), Expect = 5.095e-40
Identity = 95/310 (30.65%), Postives = 167/310 (53.87%), Query Frame = 0
Query:   22 VIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGA---------------KDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMN--NRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAG--LQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEV 312
            V+R+RGLPFDC   ++  FF   G     I FVH+  G+ +GEA+ VL     +  AL +++Q +G R++++F S   E +  +    +   A               +D   + GVL++RGLPF  +  ++  +F  + ++   V +   ++GRP GEA+V F TPED   +R+A++K  M    R+I+L+ AS+ ++  +     ++ ++  G    A  P T  R+RG+P +  ++++  FF    L    ++I  +  GR TGEA+ EF S +D ++A++++R       +G R IE+ A+S EE+
Sbjct:   58 VVRLRGLPFDCAEAEIVDFFH--GLDVVDILFVHK-GGKPTGEAYCVLGYPLQIDFALQRNRQNIGRRYVEVFRSRKDEYYKAIANEILEAPAGSPRRAASRARSSAERDLSEFKGVLRLRGLPFSASKEEIINFFKDFALSEDKVHLIANSEGRPAGEAFVEFATPED---SRDAMSKDRMTLGYRYIELFPASREELEEAASRGRLMPKSFEGKD--ATEPTTVLRMRGLPFSAGKDDIIDFFKNFTLSEESIHITYNFEGRPTGEAFVEFASAEDAKEALAKDR-----MTLGSRYIELFASSPEEL 354          
BLAST of EWM24532.1 vs. NCBI_GenBank
Match: gi|747085155|ref|XP_011090022.1| (RNA-binding protein sym-2 isoform X2 [Sesamum indicum])

HSP 1 Score: 155.992 bits (393), Expect = 5.508e-40
Identity = 95/310 (30.65%), Postives = 167/310 (53.87%), Query Frame = 0
Query:   22 VIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGA---------------KDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMN--NRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAG--LQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEV 312
            V+R+RGLPFDC   ++  FF   G     I FVH+  G+ +GEA+ VL     +  AL +++Q +G R++++F S   E +  +    +   A               +D   + GVL++RGLPF  +  ++  +F  + ++   V +   ++GRP GEA+V F TPED   +R+A++K  M    R+I+L+ AS+ ++  +     ++ ++  G    A  P T  R+RG+P +  ++++  FF    L    ++I  +  GR TGEA+ EF S +D ++A++++R       +G R IE+ A+S EE+
Sbjct:   55 VVRLRGLPFDCAEAEIVDFFH--GLDVVDILFVHK-GGKPTGEAYCVLGYPLQIDFALQRNRQNIGRRYVEVFRSRKDEYYKAIANEILEAPAGSPRRAASRARSSAERDLSEFKGVLRLRGLPFSASKEEIINFFKDFALSEDKVHLIANSEGRPAGEAFVEFATPED---SRDAMSKDRMTLGYRYIELFPASREELEEAASRGRLMPKSFEGKD--ATEPTTVLRMRGLPFSAGKDDIIDFFKNFTLSEESIHITYNFEGRPTGEAFVEFASAEDAKEALAKDR-----MTLGSRYIELFASSPEEL 351          
The following BLAST results are available for this feature:
BLAST of EWM24532.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106040|gb|EWM24532.1|0.000e+0100.00RNA binding protein [Nannochloropsis gaditana][more]
gi|553187532|ref|XP_005854630.1|2.064e-2299.63rna binding protein, partial [Nannochloropsis gadi... [more]
gi|553188131|ref|XP_005854740.1|1.466e-11100.00rna binding protein [Nannochloropsis gaditana CCMP... [more]
gi|298710505|emb|CBJ25569.1|1.703e-8543.92conserved unknown protein [Ectocarpus siliculosus][more]
gi|731325687|ref|XP_010673643.1|5.957e-4233.01PREDICTED: heterogeneous nuclear ribonucleoprotein... [more]
gi|922852462|gb|KOO21150.1|3.147e-4131.09epithelial splicing regulatory protein 2 [Chrysoch... [more]
gi|902221772|gb|KNA19007.1|1.124e-4032.37hypothetical protein SOVF_065660 [Spinacia olerace... [more]
gi|661876690|emb|CDP19319.1|2.566e-4031.39unnamed protein product [Coffea canephora][more]
gi|747085153|ref|XP_011090021.1|5.095e-4030.65RNA-binding protein sym-2 isoform X1 [Sesamum indi... [more]
gi|747085155|ref|XP_011090022.1|5.508e-4030.65RNA-binding protein sym-2 isoform X2 [Sesamum indi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6150rna6150Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications