EWM24547.1, cds6132 (CDS) Nannochloropsis gaditana

Overview
NameEWM24547.1
Unique Namecds6132
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:698336..698343 -
Alignment locationCM002467.1:697969..698209 -
Alignment locationCM002467.1:697533..697714 -
Alignment locationCM002467.1:696804..697410 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24547.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100260g2.1403.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:698336..698343 -
CM002467.1supercontigCM002467.1:697969..698209 -
CM002467.1supercontigCM002467.1:697533..697714 -
CM002467.1supercontigCM002467.1:696804..697410 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR001683Phox
Homology
BLAST of EWM24547.1 vs. NCBI_GenBank
Match: gi|585106056|gb|EWM24547.1| (hypothetical protein Naga_100260g2 [Nannochloropsis gaditana])

HSP 1 Score: 698.738 bits (1802), Expect = 0.000e+0
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0
Query:    1 MRVTAQLVRPFTYCIHKRASGVLRGSGRRFASGCTPITETSTARMESLTRIVTNTLRNPGGVTKLWSFSLADPSQGRRERPHKLVLRHNKLSGTRFVVLDGIEVPGTRGTTSLLNAVEILFKVDDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHMEDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIVHYKVVCTLSGAGRAGGKEGGREGGEEGGKEGEVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMPKASHNPDLLRFFSLHPVTGQPLDPGDLNLHVELRF 345
            MRVTAQLVRPFTYCIHKRASGVLRGSGRRFASGCTPITETSTARMESLTRIVTNTLRNPGGVTKLWSFSLADPSQGRRERPHKLVLRHNKLSGTRFVVLDGIEVPGTRGTTSLLNAVEILFKVDDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHMEDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIVHYKVVCTLSGAGRAGGKEGGREGGEEGGKEGEVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMPKASHNPDLLRFFSLHPVTGQPLDPGDLNLHVELRF
Sbjct:    1 MRVTAQLVRPFTYCIHKRASGVLRGSGRRFASGCTPITETSTARMESLTRIVTNTLRNPGGVTKLWSFSLADPSQGRRERPHKLVLRHNKLSGTRFVVLDGIEVPGTRGTTSLLNAVEILFKVDDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHMEDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIVHYKVVCTLSGAGRAGGKEGGREGGEEGGKEGEVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMPKASHNPDLLRFFSLHPVTGQPLDPGDLNLHVELRF 345          
BLAST of EWM24547.1 vs. NCBI_GenBank
Match: gi|553187541|ref|XP_005854633.1| (hypothetical protein NGA_0169700 [Nannochloropsis gaditana CCMP526] >gi|422294431|gb|EKU21731.1| hypothetical protein NGA_0169700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 334.339 bits (856), Expect = 5.798e-113
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:   45 MESLTRIVTNTLRNPGGVTKLWSFSLADPSQGRRERPHKLVLRHNKLSGTRFVVLDGIEVPGTRGTTSLLNAVEILFKVDDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHMEDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIV 210
            MESLTRIVTNTLRNPGGVTKLWSFSLADPSQGRRERPHKLVLRHNKLSGTRFVVLDGIEVPGTRGTTSLLNAVEILFKVDDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHMEDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIV
Sbjct:    1 MESLTRIVTNTLRNPGGVTKLWSFSLADPSQGRRERPHKLVLRHNKLSGTRFVVLDGIEVPGTRGTTSLLNAVEILFKVDDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHMEDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIV 166          
BLAST of EWM24547.1 vs. NCBI_GenBank
Match: gi|299473012|emb|CBN79878.1| (hypothetical protein Esi_0538_0008 [Ectocarpus siliculosus])

HSP 1 Score: 117.857 bits (294), Expect = 4.132e-27
Identity = 94/283 (33.22%), Postives = 129/283 (45.58%), Query Frame = 0
Query:   60 GGVTKLWSFSLADPSQGRRERPHKLVLRHNKLSG--TRFVVLDGIEVPGTR-----GTTSLLNAVEILFKVDDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHMEDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIVHYKVVCTLSGAGRAGGKEGGREGGEEGGKEG---EVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMPKASHNPDLLRFFSLHPVTGQPL 332
            G + + W   L DPS+GRRE  HK+ LRH  L+G  +R V +DGI V G       G  SL   V +  +V      V        G + YSC +                 G  +P + D  G           G V +  + P    +   G   + ++VV TL G  R     GG   G+     G     VV+RR+  F  L   V +   GSHLL SLP LP K +NP  +Q    F+E RR+ L+ YL+RL+ +PKA  + +L+ F  LHP+TG PL
Sbjct:   10 GPMVRTWHMRLPDPSRGRREEVHKVQLRHFPLTGHSSRSVTVDGIAVQGAESAPPPGGGSLKKTVTLKVRVGSHDCWVGYRASARPGRYFYSCIID----------------GVVMPELNDTVGDTGDDEGVPLPGEVFIDSIEP---AKDRFGTEFLEFRVV-TLRGTRRRDSCGGGGGAGKAVDGGGGCYHAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLPAKCINPLVNQMGAAFLESRREVLQAYLRRLLEVPKARASVNLMGFLGLHPITGYPL 272          
BLAST of EWM24547.1 vs. NCBI_GenBank
Match: gi|553180403|ref|XP_005853399.1| (px domain containing protein [Nannochloropsis gaditana CCMP526] >gi|422295662|gb|EKU22961.1| px domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 82.4185 bits (202), Expect = 3.541e-14
Identity = 51/122 (41.80%), Postives = 61/122 (50.00%), Query Frame = 0
Query:  212 YKVVCTLSGAGRAGGKEGGREG--GEEGGKEGEVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMPKASHNPDLLRFFSLHPVTGQP 331
            +  + T   A    G E G +G  G  G KE E     R+RDFDKLD  +RS F G HL SSLP LP K L      + P F+E RR  L+ Y+QRL   P    NPD   F     V G+P
Sbjct:  189 FYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRF--RFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAF-----VLGEP 303          
BLAST of EWM24547.1 vs. NCBI_GenBank
Match: gi|585101340|gb|EWM21227.1| (px domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 82.4185 bits (202), Expect = 3.940e-14
Identity = 51/122 (41.80%), Postives = 61/122 (50.00%), Query Frame = 0
Query:  212 YKVVCTLSGAGRAGGKEGGREG--GEEGGKEGEVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMPKASHNPDLLRFFSLHPVTGQP 331
            +  + T   A    G E G +G  G  G KE E     R+RDFDKLD  +RS F G HL SSLP LP K L      + P F+E RR  L+ Y+QRL   P    NPD   F     V G+P
Sbjct:  194 FYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRF--RFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAF-----VLGEP 308          
BLAST of EWM24547.1 vs. NCBI_GenBank
Match: gi|676389375|ref|XP_009037966.1| (expressed protein [Aureococcus anophagefferens] >gi|323451462|gb|EGB07339.1| expressed protein [Aureococcus anophagefferens])

HSP 1 Score: 81.2629 bits (199), Expect = 4.913e-14
Identity = 76/276 (27.54%), Postives = 112/276 (40.58%), Query Frame = 0
Query:   62 VTKLWSFSLADPSQGRRERPHKLVLRHNKLSGTRFVVLDGIEVPGTRGTTSLL-------NAVEILFKVDDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHM-EDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIVHYKVVCTLSGAGRAGGKEGGREGGEEGGKEGEVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMPKASHNPDLLRF--FSLHPV 327
            V ++W     D   GRRE    + L HN LSG    V   I  PG+               +  I F V      VSI P   A GF Y        + E    ++   + S  P M  DV      S   H        V+     T+     +   ++ + T           G RE            + +R+ +F      V+ A+AGSHL S++P+ P K LNPF +Q DP F+E+RR EL  + ++++ +P+   NP LL F   +L P+
Sbjct:    2 VARVWLQPFVDAQNGRRETLCVVYLEHNNLSGA---VSLQIRAPGSEVVVDGGVGRVVVGKSATIPFSVAACVGRVSILPK--ATGFDYLLNWAGNGVAE----VQQRTIESLEPLMPRDVTVEVGPSVECHSGKSFYKLVVSANGETREPASCIRDDFRGILTGKTINVVTDARGRRE------------LTKRFSEFQDCYERVKDAYAGSHLRSNVPAPPKKCLNPFQNQLDPDFVENRRVELNDFAKKMVVLPRVLVNPALLDFLGLALQPI 256          
BLAST of EWM24547.1 vs. NCBI_GenBank
Match: gi|676389975|ref|XP_009038266.1| (hypothetical protein AURANDRAFT_71905 [Aureococcus anophagefferens] >gi|323451151|gb|EGB07029.1| hypothetical protein AURANDRAFT_71905 [Aureococcus anophagefferens])

HSP 1 Score: 80.4925 bits (197), Expect = 7.107e-13
Identity = 70/259 (27.03%), Postives = 106/259 (40.93%), Query Frame = 0
Query:   60 GGVTKLWSFSLADPSQGRRERPHKLVLRHNKLSGTRFVVLDGIEVPGTRGTTSLLN--AVEILFKVDDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHMEDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIVHYKVVCTLSGAGRAGGKEGGREGGEEGGKEGEVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMPKASHNP 316
            G V + W F             H++ L H+ L+G R  ++D  E+ G+ GT+S+ +     I F        + I       GF Y+C          AD + V +  S+        G A  SG         V   V   R  +S    IV Y +    S                +G +     V RR+RDF  LD  +  A AG H+ +S+P LP+K L  F D +D  F+E RR++L+ Y+ +L+ +P     P
Sbjct:    7 GEVNRTWRFCDGGGQH------HEVSLYHHPLTGARAALVDHEELEGSLGTSSVFHGSTTTIPFACGGCRGAIHIQRS-AFFGFSYAC---------SADGVSVPEATSATADPRRAPGHAGRSGPALRVNSCRVLAHVTT-RDHASPSAPIVWYLIETHAS----------------KGDEVATTRVHRRFRDFADLDEAITGALAGHHVRNSVPRLPLKKLKLFQDHNDAAFLEARRRDLDGYVAKLVHVPHVWATP 232          
BLAST of EWM24547.1 vs. NCBI_GenBank
Match: gi|553195737|ref|XP_005856197.1| (px domain containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292875|gb|EKU20177.1| px domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.559 bits (179), Expect = 2.990e-11
Identity = 44/101 (43.56%), Postives = 53/101 (52.48%), Query Frame = 0
Query:  212 YKVVCTLSGAGRAGGKEGGREG--GEEGGKEGEVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMP 310
            +  + T   A    G E G +G  G  G KE E     R+RDFDKLD  +RS F G HL SSLP LP K L      + P F+E RR  L+ Y+QRL   P
Sbjct:  189 FYTLKTRWAATEGTGAEEGEQGANGRAGPKEKEHRF--RFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFP 287          
BLAST of EWM24547.1 vs. NCBI_GenBank
Match: gi|553182844|ref|XP_005853793.1| (px domain containing protein [Nannochloropsis gaditana CCMP526] >gi|422295267|gb|EKU22566.1| px domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 72.4034 bits (176), Expect = 3.215e-10
Identity = 76/261 (29.12%), Postives = 108/261 (41.38%), Query Frame = 0
Query:   53 TNTLRNPGGVTKLWSFSLADPSQGRRERPHKLVLRHNKLSGTRFVVLDGIEVPGTRGTTSLLNAV--EILFKV-DDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHMEDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIVHYKVVCTLSGAGRAGGKEGGREGGEEGGKEGEVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMP 310
            TN L+  G V + W +    P+  +    H + L H+ ++G R V +   EVPG+ G++   +A    I F V  D    + I    G   F Y+C V  R L      L   D        E    A  G+ N +                 SS+ K +  Y++  T        G +G R            +V RRYR+F  L   V +AF G HL SSLP LP + L    D +D  F+E RR  LE  L +L+ +P
Sbjct:    4 TNVLQ--GEVHRSWVW--LSPAGAK----HVIDLWHDTVTGVRSVAVGMEEVPGSMGSSPFFSAEAHHINFTVGQDQCRGMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDE-------ERFNIAILGAANAY-----------------SSKEKSVTWYELTVTR-------GSDGAR-----------TLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVP 214          
BLAST of EWM24547.1 vs. NCBI_GenBank
Match: gi|585102925|gb|EWM22419.1| (px domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 72.4034 bits (176), Expect = 3.273e-10
Identity = 76/261 (29.12%), Postives = 108/261 (41.38%), Query Frame = 0
Query:   53 TNTLRNPGGVTKLWSFSLADPSQGRRERPHKLVLRHNKLSGTRFVVLDGIEVPGTRGTTSLLNAV--EILFKV-DDATATVSITPDLGAGGFIYSCRVGARLLTEQADVLEVSDMGSSLPHMEDVGGAANGSGNGHEAGRVPVRVMVPEFRTQSSEGKLIVHYKVVCTLSGAGRAGGKEGGREGGEEGGKEGEVVVFRRYRDFDKLDRLVRSAFAGSHLLSSLPSLPIKVLNPFADQSDPLFIEHRRQELEVYLQRLIRMP 310
            TN L+  G V + W +    P+  +    H + L H+ ++G R V +   EVPG+ G++   +A    I F V  D    + I    G   F Y+C V  R L      L   D        E    A  G+ N +                 SS+ K +  Y++  T        G +G R            +V RRYR+F  L   V +AF G HL SSLP LP + L    D +D  F+E RR  LE  L +L+ +P
Sbjct:    4 TNVLQ--GEVHRSWVW--LSPAGAK----HVIDLWHDTVTGVRSVAVGMEEVPGSMGSSPFFSAEAHHINFTVGQDQCRGMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDE-------ERFNIAILGAANAY-----------------SSKEKSVTWYELTVTR-------GSDGAR-----------TLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVP 214          
The following BLAST results are available for this feature:
BLAST of EWM24547.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106056|gb|EWM24547.1|0.000e+0100.00hypothetical protein Naga_100260g2 [Nannochloropsi... [more]
gi|553187541|ref|XP_005854633.1|5.798e-113100.00hypothetical protein NGA_0169700 [Nannochloropsis ... [more]
gi|299473012|emb|CBN79878.1|4.132e-2733.22hypothetical protein Esi_0538_0008 [Ectocarpus sil... [more]
gi|553180403|ref|XP_005853399.1|3.541e-1441.80px domain containing protein [Nannochloropsis gadi... [more]
gi|585101340|gb|EWM21227.1|3.940e-1441.80px domain containing protein [Nannochloropsis gadi... [more]
gi|676389375|ref|XP_009037966.1|4.913e-1427.54expressed protein [Aureococcus anophagefferens] >g... [more]
gi|676389975|ref|XP_009038266.1|7.107e-1327.03hypothetical protein AURANDRAFT_71905 [Aureococcus... [more]
gi|553195737|ref|XP_005856197.1|2.990e-1143.56px domain containing protein, partial [Nannochloro... [more]
gi|553182844|ref|XP_005853793.1|3.215e-1029.12px domain containing protein [Nannochloropsis gadi... [more]
gi|585102925|gb|EWM22419.1|3.273e-1029.12px domain containing protein [Nannochloropsis gadi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6147rna6147Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications