EWM24551.1, cds6122 (CDS) Nannochloropsis gaditana

Overview
NameEWM24551.1
Unique Namecds6122
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:671089..671517 +

Link to JBrowse

Properties
Property NameValue
Start range671089
Start range.
Protein idEWM24551.1
Productglobin domain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100613g3.4710.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:671089..671517 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0042221response to chemical
GO:0015671oxygen transport
Vocabulary: Molecular Function
TermDefinition
GO:0019825oxygen binding
GO:0005506iron ion binding
GO:0020037heme binding
Vocabulary: INTERPRO
TermDefinition
IPR009050Globin-like
IPR012292Globin_dom
Homology
BLAST of EWM24551.1 vs. NCBI_GenBank
Match: gi|585106062|gb|EWM24551.1| (globin domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 290.426 bits (742), Expect = 2.123e-99
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query:    1 SDMLIRLGKRHHDLGVRPQQYVSMQRSILVSLEELLGAEWNRDYRDAWASVFSFISHVMIKAAAEEAQRVAREGKQEGGKGRGEGGEGGGEASHGEGRGKGCPITAPAHMPVNKVLSGLQLESIHTSHPDGHYLHRTPAKKG 142
            SDMLIRLGKRHHDLGVRPQQYVSMQRSILVSLEELLGAEWNRDYRDAWASVFSFISHVMIKAAAEEAQRVAREGKQEGGKGRGEGGEGGGEASHGEGRGKGCPITAPAHMPVNKVLSGLQLESIHTSHPDGHYLHRTPAKKG
Sbjct:    1 SDMLIRLGKRHHDLGVRPQQYVSMQRSILVSLEELLGAEWNRDYRDAWASVFSFISHVMIKAAAEEAQRVAREGKQEGGKGRGEGGEGGGEASHGEGRGKGCPITAPAHMPVNKVLSGLQLESIHTSHPDGHYLHRTPAKKG 142          
BLAST of EWM24551.1 vs. NCBI_GenBank
Match: gi|1179947579|ref|WP_083469933.1| (hemin receptor [Herpetosiphon geysericola])

HSP 1 Score: 56.9954 bits (136), Expect = 1.064e-7
Identity = 22/57 (38.60%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    7 LGKRHHDLGVRPQQYVSMQRSILVSLEELLGAEWNRDYRDAWASVFSFISHVMIKAA 63
            LG+RH D GV+P+ Y ++  +++ +L + LG +WN + +DAW + +S +++VMI+A+
Sbjct:   69 LGRRHIDYGVKPEHYDTVGAALVWALAQQLGPQWNTEVQDAWVAAYSLVANVMIEAS 125          
BLAST of EWM24551.1 vs. NCBI_GenBank
Match: gi|934113552|gb|KPL86218.1| (hemin receptor [Herpetosiphon geysericola])

HSP 1 Score: 56.9954 bits (136), Expect = 1.258e-7
Identity = 22/57 (38.60%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    7 LGKRHHDLGVRPQQYVSMQRSILVSLEELLGAEWNRDYRDAWASVFSFISHVMIKAA 63
            LG+RH D GV+P+ Y ++  +++ +L + LG +WN + +DAW + +S +++VMI+A+
Sbjct:   80 LGRRHIDYGVKPEHYDTVGAALVWALAQQLGPQWNTEVQDAWVAAYSLVANVMIEAS 136          
BLAST of EWM24551.1 vs. NCBI_GenBank
Match: gi|655257474|ref|WP_028667990.1| (hemin receptor [Runella zeae])

HSP 1 Score: 55.4546 bits (132), Expect = 4.586e-7
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 0
Query:    3 MLIRLGKRHHDLGVRPQQYVSMQRSILVSLEELLGAEWNRDYRDAWASVFSFISHVMIKAA 63
            +L  LGKRH   GV   QY S+  S + +LEE+L  E+  D R AW  V+  +S VMI+AA
Sbjct:   73 LLQDLGKRHIKYGVEASQYASVSESFMWTLEEILKDEFTPDIRQAWEEVYQLMSSVMIEAA 133          
The following BLAST results are available for this feature:
BLAST of EWM24551.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585106062|gb|EWM24551.1|2.123e-99100.00globin domain protein, partial [Nannochloropsis ga... [more]
gi|1179947579|ref|WP_083469933.1|1.064e-738.60hemin receptor [Herpetosiphon geysericola][more]
gi|934113552|gb|KPL86218.1|1.258e-738.60hemin receptor [Herpetosiphon geysericola][more]
gi|655257474|ref|WP_028667990.1|4.586e-745.90hemin receptor [Runella zeae][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6137rna6137Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications