EWM24565.1, cds6111 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|585106079|gb|EWM24565.1| (hypothetical protein Naga_100140g9 [Nannochloropsis gaditana]) HSP 1 Score: 588.186 bits (1515), Expect = 0.000e+0 Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0 Query: 1 MKTGVSRGLKRGRHMNPYQKSFLLLAAAFTAGASSGLGSADYVEKGQSSKLHVVSPKAQLPHFLVRGGSSFVPPPPSQQSSPRAPPSQRKDDQQQPQERPPQETAMYREQHVVTRPWGPSSTAYSYQRYYSVNPPSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ 286 MKTGVSRGLKRGRHMNPYQKSFLLLAAAFTAGASSGLGSADYVEKGQSSKLHVVSPKAQLPHFLVRGGSSFVPPPPSQQSSPRAPPSQRKDDQQQPQERPPQETAMYREQHVVTRPWGPSSTAYSYQRYYSVNPPSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ Sbjct: 1 MKTGVSRGLKRGRHMNPYQKSFLLLAAAFTAGASSGLGSADYVEKGQSSKLHVVSPKAQLPHFLVRGGSSFVPPPPSQQSSPRAPPSQRKDDQQQPQERPPQETAMYREQHVVTRPWGPSSTAYSYQRYYSVNPPSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ 286
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|219109822|ref|XP_002176664.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411199|gb|EEC51127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 100.908 bits (250), Expect = 3.554e-21 Identity = 82/269 (30.48%), Postives = 119/269 (44.24%), Query Frame = 0 Query: 25 LAAAFTAGASSGLGSADYVEKGQSSKLHVVSPKAQLPHFLVRGGSSFVPPPPSQQSSPRAPPSQRKDDQQQPQ----------ERPPQETAMYREQHVVTRPWGPSSTAYSYQRYYSVNPPSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSG 283 LA A ASS A + G+ +K H++S RGGSS VP Q S PS D P+ + P ET R + W + YS P E G +++ +VG ++F +L R HLYE+ADQ+ RL +P+ L AN+AG + S+ S + +K RLKAIL+L+ L EV+ I + RL + ++TPRE Y+ SV+ + C AF+ WD + Sbjct: 35 LAVACPVQASSARQGARILNPGKCTK-HLISTTLS-----TRGGSSQVPHDFPQTSGFARVPS---DGTMYPEAYAGAPVPENDDPFHETVQERVDY-----WRTQQRQQAAANMYS---PRDEKGRM------KLLTSVGKGSRALIFFVLMWRDVHLYEVADQLKSGLTRLFFVIPLAVLFIANMAGAVASIT---SPSQSAKKRLKAILNLDKLLEVLLIVFYFLRLTIAPSKYTPREIYISNTLHSVFFILQCQAFTKMSWDETA 277
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|298709097|emb|CBJ31045.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 83.1889 bits (204), Expect = 9.518e-16 Identity = 46/136 (33.82%), Postives = 81/136 (59.56%), Query Frame = 0 Query: 150 IMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQF 285 + R G GV +F+++ RS + YE A+Q++G R + +P VGL NL + LSL++S + ++ K R+K +L+++ + E + + YN L+ G P+E +VGRI T+V +++C F+ +RW + G F Sbjct: 52 LFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGAL-RAMSMVPAVGLFLGNLVCMCLSLVESAT--NKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGAF 184
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|1210524926|dbj|GAX16118.1| (hypothetical protein FisN_3Hu401 [Fistulifera solaris]) HSP 1 Score: 81.2629 bits (199), Expect = 2.669e-14 Identity = 52/185 (28.11%), Postives = 81/185 (43.78%), Query Frame = 0 Query: 121 STAYSYQRYYSVNPPSPEGGARHEILYPR----------------------IMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSG 283 S+ YS + Y V PP+ E + I R ++ +VG ++F +L R HLYE+AD RLL P++ L +N+ G SL S +K RLKAIL+L+ EV+ + + RL + PRE ++ IF SV+ + ++ WD + Sbjct: 57 SSDYSPEYYQDVEPPTHETTVQDNIDTWRAQQRQRAEATQHSMRDDQGRVKLLTSVGKGSRALIFFVLMLRDIHLYEVADASRKGLARLLCVTPLIALFLSNMVGAFASLA---SPTHATKKRLKAILNLDKALEVVLMVFYLLRLTIFPPAHIPRETFIANIFHSVFFILQAQTYTRLSWDETA 238
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|1072234032|gb|OEU18762.1| (hypothetical protein FRACYDRAFT_268438 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 78.1814 bits (191), Expect = 1.368e-13 Identity = 47/148 (31.76%), Postives = 78/148 (52.70%), Query Frame = 0 Query: 135 PSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQ-ISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDS 281 P E R E ++M +V ++F IL R +L+++ADQ I G F++ LV + + NLAGV++S+ ++ K RLKAIL+L+ + E + +N R+ L ++ PRE ++ I S+ + C AF+ WD Sbjct: 9 PQQEYNPRDEDGRMKLMSSVSKGSRALIFFILMWRDVYLFDVADQFIKGSFRKGLVRCILTSVFIGNLAGVVISVTSPAGHST--KNRLKAILNLDKVVETGLLLWNFGRVTLFPSKYVPREIFIAGIMHSIIFIIQCQAFTRVTWDE 154
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|397570559|gb|EJK47348.1| (hypothetical protein THAOC_33936 [Thalassiosira oceanica]) HSP 1 Score: 62.003 bits (149), Expect = 4.820e-8 Identity = 39/125 (31.20%), Postives = 60/125 (48.00%), Query Frame = 0 Query: 166 LTARSTHLYELAD--------QISGIFKRLLVTLPVVGLLCANLAG-VLLSLMQSFSRNSRS-KTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWD 280 L R+ H YE AD + + KR V P+V L L G V+ RS K RLK +L+L+ E++ + YN RL + ++ PRE Y+GR ++ + L C +++ WD Sbjct: 23 LMWRTVHHYESADAAFEAGGGGLGKMLKRTAVCAPLVILFLGELVGAVMGLSGGKGGNGGRSTKRRLKGVLNLHKAVELMTMTYNVIRLAVWPSRYVPREVYIGRTVSNFFFLMQCQLYTSLSWD 147 The following BLAST results are available for this feature:
BLAST of EWM24565.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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