EWM24565.1, cds6111 (CDS) Nannochloropsis gaditana

Overview
NameEWM24565.1
Unique Namecds6111
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:637610..637780 -
Alignment locationCM002467.1:636740..637429 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24565.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100140g9.4489.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:637610..637780 -
CM002467.1supercontigCM002467.1:636740..637429 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|585106079|gb|EWM24565.1| (hypothetical protein Naga_100140g9 [Nannochloropsis gaditana])

HSP 1 Score: 588.186 bits (1515), Expect = 0.000e+0
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
Query:    1 MKTGVSRGLKRGRHMNPYQKSFLLLAAAFTAGASSGLGSADYVEKGQSSKLHVVSPKAQLPHFLVRGGSSFVPPPPSQQSSPRAPPSQRKDDQQQPQERPPQETAMYREQHVVTRPWGPSSTAYSYQRYYSVNPPSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ 286
            MKTGVSRGLKRGRHMNPYQKSFLLLAAAFTAGASSGLGSADYVEKGQSSKLHVVSPKAQLPHFLVRGGSSFVPPPPSQQSSPRAPPSQRKDDQQQPQERPPQETAMYREQHVVTRPWGPSSTAYSYQRYYSVNPPSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ
Sbjct:    1 MKTGVSRGLKRGRHMNPYQKSFLLLAAAFTAGASSGLGSADYVEKGQSSKLHVVSPKAQLPHFLVRGGSSFVPPPPSQQSSPRAPPSQRKDDQQQPQERPPQETAMYREQHVVTRPWGPSSTAYSYQRYYSVNPPSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ 286          
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|219109822|ref|XP_002176664.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411199|gb|EEC51127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 100.908 bits (250), Expect = 3.554e-21
Identity = 82/269 (30.48%), Postives = 119/269 (44.24%), Query Frame = 0
Query:   25 LAAAFTAGASSGLGSADYVEKGQSSKLHVVSPKAQLPHFLVRGGSSFVPPPPSQQSSPRAPPSQRKDDQQQPQ----------ERPPQETAMYREQHVVTRPWGPSSTAYSYQRYYSVNPPSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSG 283
            LA A    ASS    A  +  G+ +K H++S          RGGSS VP    Q S     PS   D    P+          + P  ET   R  +     W       +    YS   P  E G        +++ +VG     ++F +L  R  HLYE+ADQ+     RL   +P+  L  AN+AG + S+    S +  +K RLKAIL+L+ L EV+ I +   RL +   ++TPRE Y+     SV+ +  C AF+   WD + 
Sbjct:   35 LAVACPVQASSARQGARILNPGKCTK-HLISTTLS-----TRGGSSQVPHDFPQTSGFARVPS---DGTMYPEAYAGAPVPENDDPFHETVQERVDY-----WRTQQRQQAAANMYS---PRDEKGRM------KLLTSVGKGSRALIFFVLMWRDVHLYEVADQLKSGLTRLFFVIPLAVLFIANMAGAVASIT---SPSQSAKKRLKAILNLDKLLEVLLIVFYFLRLTIAPSKYTPREIYISNTLHSVFFILQCQAFTKMSWDETA 277          
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|298709097|emb|CBJ31045.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.1889 bits (204), Expect = 9.518e-16
Identity = 46/136 (33.82%), Postives = 81/136 (59.56%), Query Frame = 0
Query:  150 IMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQF 285
            + R  G  GV  +F+++  RS + YE A+Q++G   R +  +P VGL   NL  + LSL++S +  ++ K R+K +L+++ + E + + YN   L+ G     P+E +VGRI T+V  +++C  F+ +RW + G F
Sbjct:   52 LFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGAL-RAMSMVPAVGLFLGNLVCMCLSLVESAT--NKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGAF 184          
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|1210524926|dbj|GAX16118.1| (hypothetical protein FisN_3Hu401 [Fistulifera solaris])

HSP 1 Score: 81.2629 bits (199), Expect = 2.669e-14
Identity = 52/185 (28.11%), Postives = 81/185 (43.78%), Query Frame = 0
Query:  121 STAYSYQRYYSVNPPSPEGGARHEILYPR----------------------IMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSG 283
            S+ YS + Y  V PP+ E   +  I   R                      ++ +VG     ++F +L  R  HLYE+AD       RLL   P++ L  +N+ G   SL    S    +K RLKAIL+L+   EV+ + +   RL +      PRE ++  IF SV+ +     ++   WD + 
Sbjct:   57 SSDYSPEYYQDVEPPTHETTVQDNIDTWRAQQRQRAEATQHSMRDDQGRVKLLTSVGKGSRALIFFVLMLRDIHLYEVADASRKGLARLLCVTPLIALFLSNMVGAFASLA---SPTHATKKRLKAILNLDKALEVVLMVFYLLRLTIFPPAHIPRETFIANIFHSVFFILQAQTYTRLSWDETA 238          
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|1072234032|gb|OEU18762.1| (hypothetical protein FRACYDRAFT_268438 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 78.1814 bits (191), Expect = 1.368e-13
Identity = 47/148 (31.76%), Postives = 78/148 (52.70%), Query Frame = 0
Query:  135 PSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQ-ISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDS 281
            P  E   R E    ++M +V      ++F IL  R  +L+++ADQ I G F++ LV   +  +   NLAGV++S+      ++  K RLKAIL+L+ + E   + +N  R+ L   ++ PRE ++  I  S+  +  C AF+   WD 
Sbjct:    9 PQQEYNPRDEDGRMKLMSSVSKGSRALIFFILMWRDVYLFDVADQFIKGSFRKGLVRCILTSVFIGNLAGVVISVTSPAGHST--KNRLKAILNLDKVVETGLLLWNFGRVTLFPSKYVPREIFIAGIMHSIIFIIQCQAFTRVTWDE 154          
BLAST of EWM24565.1 vs. NCBI_GenBank
Match: gi|397570559|gb|EJK47348.1| (hypothetical protein THAOC_33936 [Thalassiosira oceanica])

HSP 1 Score: 62.003 bits (149), Expect = 4.820e-8
Identity = 39/125 (31.20%), Postives = 60/125 (48.00%), Query Frame = 0
Query:  166 LTARSTHLYELAD--------QISGIFKRLLVTLPVVGLLCANLAG-VLLSLMQSFSRNSRS-KTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWD 280
            L  R+ H YE AD         +  + KR  V  P+V L    L G V+           RS K RLK +L+L+   E++ + YN  RL +   ++ PRE Y+GR  ++ + L  C  +++  WD
Sbjct:   23 LMWRTVHHYESADAAFEAGGGGLGKMLKRTAVCAPLVILFLGELVGAVMGLSGGKGGNGGRSTKRRLKGVLNLHKAVELMTMTYNVIRLAVWPSRYVPREVYIGRTVSNFFFLMQCQLYTSLSWD 147          
The following BLAST results are available for this feature:
BLAST of EWM24565.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585106079|gb|EWM24565.1|0.000e+0100.00hypothetical protein Naga_100140g9 [Nannochloropsi... [more]
gi|219109822|ref|XP_002176664.1|3.554e-2130.48predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298709097|emb|CBJ31045.1|9.518e-1633.82conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210524926|dbj|GAX16118.1|2.669e-1428.11hypothetical protein FisN_3Hu401 [Fistulifera sola... [more]
gi|1072234032|gb|OEU18762.1|1.368e-1331.76hypothetical protein FRACYDRAFT_268438 [Fragilario... [more]
gi|397570559|gb|EJK47348.1|4.820e-831.20hypothetical protein THAOC_33936 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6126rna6126Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications