EWM24567.1, cds6101 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|585106082|gb|EWM24567.1| (threonyl-trna synthetase, partial [Nannochloropsis gaditana]) HSP 1 Score: 432.18 bits (1110), Expect = 2.598e-153 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query: 1 FPPSLVTSFSPFLHLPFIPSLPFSPAGRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEGV 212
FPPSLVTSFSPFLHLPFIPSLPFSPAGRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEGV
Sbjct: 1 FPPSLVTSFSPFLHLPFIPSLPFSPAGRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEGV 212
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|553190379|ref|XP_005855179.1| (threonyl-tRNA synthetase, partial [Nannochloropsis gaditana CCMP526] >gi|422293882|gb|EKU21182.1| threonyl-tRNA synthetase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 258.455 bits (659), Expect = 6.987e-77 Identity = 141/195 (72.31%), Postives = 142/195 (72.82%), Query Frame = 0
Query: 17 FIPSLPFSPAGRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEG 211
+PS P RLWQCSTIQCDFNLPERFDLEYVADDGSK AMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEG
Sbjct: 345 LLPSFP----RRLWQCSTIQCDFNLPERFDLEYVADDGSK----------------------------------------------AMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEG 489
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|223997660|ref|XP_002288503.1| (threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335] >gi|220975611|gb|EED93939.1| threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 225.328 bits (573), Expect = 4.370e-67 Identity = 108/176 (61.36%), Postives = 135/176 (76.70%), Query Frame = 0
Query: 27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLV----SAVESTKELHEVLEKRD 198
GR WQCST+QCDFNLPERFDLEYV+ +G K+RPIMVHRAIFGSIERFFGILVENTAGD P W++P Q++LLPVTD +D+ + + K+ + G RVEVD G+ERL KQIRNAEQ+RIPVM ++G KE+E G + +R+R G LG + V++L S L AVE T + EV EK +
Sbjct: 413 GRTWQCSTVQCDFNLPERFDLEYVSAEGKKERPIMVHRAIFGSIERFFGILVENTAGDLPFWLAPTQLKLLPVTDAVVDYCKEVAKKANKMGLRVEVDRGAERLAKQIRNAEQSRIPVMAVVGMKEMEEGTLALRSRKLGDLGSFAVDDLLSELKRCDDDAVEMTV-MGEVAEKEE 587
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|504931278|ref|WP_015118380.1| (threonine--tRNA ligase [Rivularia sp. PCC 7116] >gi|427370849|gb|AFY54805.1| threonyl-tRNA synthetase [Rivularia sp. PCC 7116]) HSP 1 Score: 223.016 bits (567), Expect = 6.090e-66 Identity = 99/158 (62.66%), Postives = 126/158 (79.75%), Query Frame = 0
Query: 27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAV 184
GRLWQCSTIQ DFNLPERFD++YVADD +KKRPIM+HRAIFGSIERFFGIL+EN AGDFPLW++P+Q RLLPV+D+ ++A+++ K L G RVEVD ERLGKQIRNAE +IPV+ ++G +E+E+ ++VRTR GG LG + E + L S +
Sbjct: 457 GRLWQCSTIQVDFNLPERFDMQYVADDDTKKRPIMIHRAIFGSIERFFGILIENYAGDFPLWLAPIQCRLLPVSDEVREYAESVAKELHKEGLRVEVDGSGERLGKQIRNAELEKIPVVAVVGKREMENQNLSVRTRKGGDLGALSINETVTHLQSII 614
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|1072225858|gb|OEU10603.1| (threonyl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 222.631 bits (566), Expect = 9.415e-66 Identity = 101/164 (61.59%), Postives = 126/164 (76.83%), Query Frame = 0
Query: 27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKEL 190
GR WQCSTIQCDFNLPERF+LEY D +K+RPIMVHRAIFGS+ERFFGIL+EN G+FPLW++P QMRLLPVTD A D+ + K+ AG R+EVD G+ERL KQIRNAEQ R+P+M ++G KE+ESG + VR+R G LG + V++L + L E T E+
Sbjct: 452 GRQWQCSTIQCDFNLPERFELEYKTADNTKERPIMVHRAIFGSLERFFGILIENCEGNFPLWLAPEQMRLLPVTDAAQDYCYEVAKKAKKAGLRIEVDRGNERLPKQIRNAEQQRVPIMAVVGEKEMESGTLAVRSRKLGDLGSFTVDDLLAELHQCTEDTVEM 615
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|219113189|ref|XP_002186178.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583028|gb|ACI65648.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 221.861 bits (564), Expect = 4.874e-65 Identity = 103/170 (60.59%), Postives = 128/170 (75.29%), Query Frame = 0
Query: 27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEK 196
GR WQCST+QCDFNLPERF LEY + DG+++RPIMVHRAIFGSIERFFGIL+EN +GDFPLW++P Q++LLPVTD ++ I + G R+EVD GSERL KQIRNAEQARIPVM ++G KE+ES + VR+R G LG + VE+L S L + +E+ V EK
Sbjct: 505 GRQWQCSTVQCDFNLPERFGLEYASADGTRERPIMVHRAIFGSIERFFGILIENCSGDFPLWLAPTQLKLLPVTDAVHEYCNEIAAKALKMGLRIEVDRGSERLAKQIRNAEQARIPVMAVVGMKEMESNSLAVRSRKLGDLGSFEVEDLLSELKRCAAAAEEMTLVGEK 674
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|648443106|ref|WP_026134857.1| (threonine--tRNA ligase [Scytonema hofmannii] >gi|1004817091|gb|KYC43035.1| threonine--tRNA ligase [Scytonema hofmannii PCC 7110]) HSP 1 Score: 220.32 bits (560), Expect = 5.503e-65 Identity = 99/160 (61.88%), Postives = 129/160 (80.62%), Query Frame = 0
Query: 27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVES 186
GRLWQCSTIQ DFNLPERFD+EY+A DGS++RPIM+HRAIFGS+ERFFGIL+EN AG+FPLW++PVQ+RLLPV+D ++A+++ L AG RVEVD ERLGKQIR AE +IPV+ ++G KEVE+ ++VRTR G LG+ ++EL L +A++S
Sbjct: 451 GRLWQCSTIQVDFNLPERFDMEYIAPDGSRQRPIMIHRAIFGSLERFFGILIENYAGNFPLWLAPVQLRLLPVSDDFREYAESVAISLKKAGIRVEVDSSGERLGKQIRTAELEKIPVVAVVGKKEVENHNLSVRTRKSGDLGVLNLDELLHQLQAAIDS 610
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|1210265347|dbj|BAZ84340.1| (threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dolichospermum compactum NIES-806]) HSP 1 Score: 220.32 bits (560), Expect = 6.016e-65 Identity = 97/154 (62.99%), Postives = 126/154 (81.82%), Query Frame = 0
Query: 27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGL 180
GRLWQCSTIQ DFNLPERF++EY+A DGS+++PIM+HRAIFGS+ERFFGIL+EN AGDFPLW++PVQ+RLLPV+D ++A++++K L +GFRVE+D ERLGKQIR AE +IPV I+G KE+ES V+VR+R G LG+ + EL + L
Sbjct: 451 GRLWQCSTIQVDFNLPERFNMEYIASDGSRQQPIMIHRAIFGSLERFFGILIENYAGDFPLWLAPVQLRLLPVSDDCREYAKSVEKDLKKSGFRVEIDSSGERLGKQIRMAELEKIPVFAILGKKEIESTTVSVRSRKAGDLGILNLAELVNYL 604
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|543538347|emb|CCQ65975.1| (Threonyl-tRNA synthetase [Crocosphaera watsonii WH 0402]) HSP 1 Score: 213.772 bits (543), Expect = 7.354e-65 Identity = 94/164 (57.32%), Postives = 126/164 (76.83%), Query Frame = 0
Query: 27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKEL 190
GR WQCSTIQ DFNLPERFD+EYVA DGS++RPIM+HRAIFGS+ERF+GIL+EN AGDFPLW++P+Q+RLLPV++ +++ + + L AG+RVE+D ERLGKQIRNAE +IPV+ I+G KEVE+ +++RTR G +G + EL SA+ + +
Sbjct: 204 GRTWQCSTIQVDFNLPERFDMEYVAVDGSRQRPIMIHRAIFGSLERFYGILIENYAGDFPLWLAPIQLRLLPVSEAQIEYGETVVATLKQAGYRVEIDCTGERLGKQIRNAELEKIPVVAIVGKKEVETQTLSIRTRQQGDIGTMTLTELKESFKSAITNKANI 367
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|1208979711|ref|WP_088240844.1| (threonine--tRNA ligase [Calothrix rhizosoleniae]) HSP 1 Score: 219.935 bits (559), Expect = 7.636e-65 Identity = 99/160 (61.88%), Postives = 128/160 (80.00%), Query Frame = 0
Query: 27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVES 186
GRLWQCSTIQ DFNLPERFD+EYVA D +K+RPIM+HRAIFGS+ERFFGIL+EN AG+FPLW++P+Q+RLLPV+D+ D+A+++ L +AGFRVEVD ERLGK IR AE +IPV+ ++G +EVE+ ++VRTR G LG V E+ S L +A+ S
Sbjct: 451 GRLWQCSTIQVDFNLPERFDMEYVASDNTKQRPIMIHRAIFGSLERFFGILIENYAGNFPLWLAPIQLRLLPVSDEVRDYAESMAADLRTAGFRVEVDSSGERLGKLIRTAELEKIPVVAVVGKREVENQTLSVRTREAGDLGALSVNEVVSRLQTAIAS 610 The following BLAST results are available for this feature:
BLAST of EWM24567.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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