EWM24567.1, cds6101 (CDS) Nannochloropsis gaditana

Overview
NameEWM24567.1
Unique Namecds6101
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:612049..612216 +
Alignment locationCM002467.1:612495..612632 +
Alignment locationCM002467.1:612765..612911 +
Alignment locationCM002467.1:613061..613246 +

Link to JBrowse

Properties
Property NameValue
Start range612049
Start range.
Protein idEWM24567.1
Productthreonyl-trna synthetase
Partialtrue
Orig transcript idgnl|cribi|Naga_100462g5.1413.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:612049..612216 +
CM002467.1supercontigCM002467.1:612495..612632 +
CM002467.1supercontigCM002467.1:612765..612911 +
CM002467.1supercontigCM002467.1:613061..613246 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006435threonyl-tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0004829threonine-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR004154Anticodon-bd
IPR002320Thr-tRNA-ligase_IIa
Homology
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|585106082|gb|EWM24567.1| (threonyl-trna synthetase, partial [Nannochloropsis gaditana])

HSP 1 Score: 432.18 bits (1110), Expect = 2.598e-153
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query:    1 FPPSLVTSFSPFLHLPFIPSLPFSPAGRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEGV 212
            FPPSLVTSFSPFLHLPFIPSLPFSPAGRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEGV
Sbjct:    1 FPPSLVTSFSPFLHLPFIPSLPFSPAGRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEGV 212          
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|553190379|ref|XP_005855179.1| (threonyl-tRNA synthetase, partial [Nannochloropsis gaditana CCMP526] >gi|422293882|gb|EKU21182.1| threonyl-tRNA synthetase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 258.455 bits (659), Expect = 6.987e-77
Identity = 141/195 (72.31%), Postives = 142/195 (72.82%), Query Frame = 0
Query:   17 FIPSLPFSPAGRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEG 211
             +PS P     RLWQCSTIQCDFNLPERFDLEYVADDGSK                                              AMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEG
Sbjct:  345 LLPSFP----RRLWQCSTIQCDFNLPERFDLEYVADDGSK----------------------------------------------AMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEKRDDEVKKEKEQEKEG 489          
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|223997660|ref|XP_002288503.1| (threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335] >gi|220975611|gb|EED93939.1| threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 225.328 bits (573), Expect = 4.370e-67
Identity = 108/176 (61.36%), Postives = 135/176 (76.70%), Query Frame = 0
Query:   27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLV----SAVESTKELHEVLEKRD 198
            GR WQCST+QCDFNLPERFDLEYV+ +G K+RPIMVHRAIFGSIERFFGILVENTAGD P W++P Q++LLPVTD  +D+ + + K+ +  G RVEVD G+ERL KQIRNAEQ+RIPVM ++G KE+E G + +R+R  G LG + V++L S L      AVE T  + EV EK +
Sbjct:  413 GRTWQCSTVQCDFNLPERFDLEYVSAEGKKERPIMVHRAIFGSIERFFGILVENTAGDLPFWLAPTQLKLLPVTDAVVDYCKEVAKKANKMGLRVEVDRGAERLAKQIRNAEQSRIPVMAVVGMKEMEEGTLALRSRKLGDLGSFAVDDLLSELKRCDDDAVEMTV-MGEVAEKEE 587          
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|504931278|ref|WP_015118380.1| (threonine--tRNA ligase [Rivularia sp. PCC 7116] >gi|427370849|gb|AFY54805.1| threonyl-tRNA synthetase [Rivularia sp. PCC 7116])

HSP 1 Score: 223.016 bits (567), Expect = 6.090e-66
Identity = 99/158 (62.66%), Postives = 126/158 (79.75%), Query Frame = 0
Query:   27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAV 184
            GRLWQCSTIQ DFNLPERFD++YVADD +KKRPIM+HRAIFGSIERFFGIL+EN AGDFPLW++P+Q RLLPV+D+  ++A+++ K L   G RVEVD   ERLGKQIRNAE  +IPV+ ++G +E+E+  ++VRTR GG LG   + E  + L S +
Sbjct:  457 GRLWQCSTIQVDFNLPERFDMQYVADDDTKKRPIMIHRAIFGSIERFFGILIENYAGDFPLWLAPIQCRLLPVSDEVREYAESVAKELHKEGLRVEVDGSGERLGKQIRNAELEKIPVVAVVGKREMENQNLSVRTRKGGDLGALSINETVTHLQSII 614          
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|1072225858|gb|OEU10603.1| (threonyl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 222.631 bits (566), Expect = 9.415e-66
Identity = 101/164 (61.59%), Postives = 126/164 (76.83%), Query Frame = 0
Query:   27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKEL 190
            GR WQCSTIQCDFNLPERF+LEY   D +K+RPIMVHRAIFGS+ERFFGIL+EN  G+FPLW++P QMRLLPVTD A D+   + K+   AG R+EVD G+ERL KQIRNAEQ R+P+M ++G KE+ESG + VR+R  G LG + V++L + L    E T E+
Sbjct:  452 GRQWQCSTIQCDFNLPERFELEYKTADNTKERPIMVHRAIFGSLERFFGILIENCEGNFPLWLAPEQMRLLPVTDAAQDYCYEVAKKAKKAGLRIEVDRGNERLPKQIRNAEQQRVPIMAVVGEKEMESGTLAVRSRKLGDLGSFTVDDLLAELHQCTEDTVEM 615          
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|219113189|ref|XP_002186178.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583028|gb|ACI65648.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 221.861 bits (564), Expect = 4.874e-65
Identity = 103/170 (60.59%), Postives = 128/170 (75.29%), Query Frame = 0
Query:   27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKELHEVLEK 196
            GR WQCST+QCDFNLPERF LEY + DG+++RPIMVHRAIFGSIERFFGIL+EN +GDFPLW++P Q++LLPVTD   ++   I  +    G R+EVD GSERL KQIRNAEQARIPVM ++G KE+ES  + VR+R  G LG + VE+L S L     + +E+  V EK
Sbjct:  505 GRQWQCSTVQCDFNLPERFGLEYASADGTRERPIMVHRAIFGSIERFFGILIENCSGDFPLWLAPTQLKLLPVTDAVHEYCNEIAAKALKMGLRIEVDRGSERLAKQIRNAEQARIPVMAVVGMKEMESNSLAVRSRKLGDLGSFEVEDLLSELKRCAAAAEEMTLVGEK 674          
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|648443106|ref|WP_026134857.1| (threonine--tRNA ligase [Scytonema hofmannii] >gi|1004817091|gb|KYC43035.1| threonine--tRNA ligase [Scytonema hofmannii PCC 7110])

HSP 1 Score: 220.32 bits (560), Expect = 5.503e-65
Identity = 99/160 (61.88%), Postives = 129/160 (80.62%), Query Frame = 0
Query:   27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVES 186
            GRLWQCSTIQ DFNLPERFD+EY+A DGS++RPIM+HRAIFGS+ERFFGIL+EN AG+FPLW++PVQ+RLLPV+D   ++A+++   L  AG RVEVD   ERLGKQIR AE  +IPV+ ++G KEVE+  ++VRTR  G LG+  ++EL   L +A++S
Sbjct:  451 GRLWQCSTIQVDFNLPERFDMEYIAPDGSRQRPIMIHRAIFGSLERFFGILIENYAGNFPLWLAPVQLRLLPVSDDFREYAESVAISLKKAGIRVEVDSSGERLGKQIRTAELEKIPVVAVVGKKEVENHNLSVRTRKSGDLGVLNLDELLHQLQAAIDS 610          
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|1210265347|dbj|BAZ84340.1| (threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dolichospermum compactum NIES-806])

HSP 1 Score: 220.32 bits (560), Expect = 6.016e-65
Identity = 97/154 (62.99%), Postives = 126/154 (81.82%), Query Frame = 0
Query:   27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGL 180
            GRLWQCSTIQ DFNLPERF++EY+A DGS+++PIM+HRAIFGS+ERFFGIL+EN AGDFPLW++PVQ+RLLPV+D   ++A++++K L  +GFRVE+D   ERLGKQIR AE  +IPV  I+G KE+ES  V+VR+R  G LG+  + EL + L
Sbjct:  451 GRLWQCSTIQVDFNLPERFNMEYIASDGSRQQPIMIHRAIFGSLERFFGILIENYAGDFPLWLAPVQLRLLPVSDDCREYAKSVEKDLKKSGFRVEIDSSGERLGKQIRMAELEKIPVFAILGKKEIESTTVSVRSRKAGDLGILNLAELVNYL 604          
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|543538347|emb|CCQ65975.1| (Threonyl-tRNA synthetase [Crocosphaera watsonii WH 0402])

HSP 1 Score: 213.772 bits (543), Expect = 7.354e-65
Identity = 94/164 (57.32%), Postives = 126/164 (76.83%), Query Frame = 0
Query:   27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVESTKEL 190
            GR WQCSTIQ DFNLPERFD+EYVA DGS++RPIM+HRAIFGS+ERF+GIL+EN AGDFPLW++P+Q+RLLPV++  +++ + +   L  AG+RVE+D   ERLGKQIRNAE  +IPV+ I+G KEVE+  +++RTR  G +G   + EL     SA+ +   +
Sbjct:  204 GRTWQCSTIQVDFNLPERFDMEYVAVDGSRQRPIMIHRAIFGSLERFYGILIENYAGDFPLWLAPIQLRLLPVSEAQIEYGETVVATLKQAGYRVEIDCTGERLGKQIRNAELEKIPVVAIVGKKEVETQTLSIRTRQQGDIGTMTLTELKESFKSAITNKANI 367          
BLAST of EWM24567.1 vs. NCBI_GenBank
Match: gi|1208979711|ref|WP_088240844.1| (threonine--tRNA ligase [Calothrix rhizosoleniae])

HSP 1 Score: 219.935 bits (559), Expect = 7.636e-65
Identity = 99/160 (61.88%), Postives = 128/160 (80.00%), Query Frame = 0
Query:   27 GRLWQCSTIQCDFNLPERFDLEYVADDGSKKRPIMVHRAIFGSIERFFGILVENTAGDFPLWMSPVQMRLLPVTDKAMDHAQAIKKRLSSAGFRVEVDPGSERLGKQIRNAEQARIPVMGIIGAKEVESGGVTVRTRLGGQLGLYGVEELASGLVSAVES 186
            GRLWQCSTIQ DFNLPERFD+EYVA D +K+RPIM+HRAIFGS+ERFFGIL+EN AG+FPLW++P+Q+RLLPV+D+  D+A+++   L +AGFRVEVD   ERLGK IR AE  +IPV+ ++G +EVE+  ++VRTR  G LG   V E+ S L +A+ S
Sbjct:  451 GRLWQCSTIQVDFNLPERFDMEYVASDNTKQRPIMIHRAIFGSLERFFGILIENYAGNFPLWLAPIQLRLLPVSDEVRDYAESMAADLRTAGFRVEVDSSGERLGKLIRTAELEKIPVVAVVGKREVENQTLSVRTREAGDLGALSVNEVVSRLQTAIAS 610          
The following BLAST results are available for this feature:
BLAST of EWM24567.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106082|gb|EWM24567.1|2.598e-153100.00threonyl-trna synthetase, partial [Nannochloropsis... [more]
gi|553190379|ref|XP_005855179.1|6.987e-7772.31threonyl-tRNA synthetase, partial [Nannochloropsis... [more]
gi|223997660|ref|XP_002288503.1|4.370e-6761.36threonyl-trna synthetase [Thalassiosira pseudonana... [more]
gi|504931278|ref|WP_015118380.1|6.090e-6662.66threonine--tRNA ligase [Rivularia sp. PCC 7116] >g... [more]
gi|1072225858|gb|OEU10603.1|9.415e-6661.59threonyl-tRNA synthetase [Fragilariopsis cylindrus... [more]
gi|219113189|ref|XP_002186178.1|4.874e-6560.59predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|648443106|ref|WP_026134857.1|5.503e-6561.88threonine--tRNA ligase [Scytonema hofmannii] >gi|1... [more]
gi|1210265347|dbj|BAZ84340.1|6.016e-6562.99threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase... [more]
gi|543538347|emb|CCQ65975.1|7.354e-6557.32Threonyl-tRNA synthetase [Crocosphaera watsonii WH... [more]
gi|1208979711|ref|WP_088240844.1|7.636e-6561.88threonine--tRNA ligase [Calothrix rhizosoleniae][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6116rna6116Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications