EWM24581.1, cds6091 (CDS) Nannochloropsis gaditana

Overview
NameEWM24581.1
Unique Namecds6091
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:586446..587876 -
Alignment locationCM002467.1:585982..586287 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24581.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100062g24.904.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:586446..587876 -
CM002467.1supercontigCM002467.1:585982..586287 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24581.1 vs. NCBI_GenBank
Match: gi|585106097|gb|EWM24581.1| (hypothetical protein Naga_100062g24 [Nannochloropsis gaditana])

HSP 1 Score: 1199.5 bits (3102), Expect = 0.000e+0
Identity = 578/578 (100.00%), Postives = 578/578 (100.00%), Query Frame = 0
Query:    1 MYATDCPQRGYYDPEAGLRSFGHRAFECDEDDKHRKRRNQTLPVALKWAMIVCFAWGLFVVVVGMASRTSGANVSFFSARARLSESERGLKDKEDSPDFYHEREQENMSQSVQADDRSESPMGGEEFGVGEGAAPQTETESSWEGRMATGRAHLLKGVALALQELIATRGQSPLSALRHDPGPTSPDFSEALSHIEQSANVLAHSNSGELEIIERDYVNATTVLALLRLHEGNFDEVFRLVGVLQSQVDLDPEEKSLLALLQGYVQEAQGTDKAGMFFALAREYDPKGCHESLLDTSYQPPHYKLSAGIPAERPAYWPALADLFVFRELYTRQHALSPAASWPGTVWSEAAQSDKDRHGANIGWGLHSAGVARAADLFAAQDFVILREFLHPFELAVLERHYQARAQGGDVEYDQHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYERRNGVVPQLKPHTDREDNEVTVSAQIYSDQAHSQWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPDELSTVSSLLLHFVDRHFDFFDYKIARQRQDPSI 578
            MYATDCPQRGYYDPEAGLRSFGHRAFECDEDDKHRKRRNQTLPVALKWAMIVCFAWGLFVVVVGMASRTSGANVSFFSARARLSESERGLKDKEDSPDFYHEREQENMSQSVQADDRSESPMGGEEFGVGEGAAPQTETESSWEGRMATGRAHLLKGVALALQELIATRGQSPLSALRHDPGPTSPDFSEALSHIEQSANVLAHSNSGELEIIERDYVNATTVLALLRLHEGNFDEVFRLVGVLQSQVDLDPEEKSLLALLQGYVQEAQGTDKAGMFFALAREYDPKGCHESLLDTSYQPPHYKLSAGIPAERPAYWPALADLFVFRELYTRQHALSPAASWPGTVWSEAAQSDKDRHGANIGWGLHSAGVARAADLFAAQDFVILREFLHPFELAVLERHYQARAQGGDVEYDQHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYERRNGVVPQLKPHTDREDNEVTVSAQIYSDQAHSQWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPDELSTVSSLLLHFVDRHFDFFDYKIARQRQDPSI
Sbjct:    1 MYATDCPQRGYYDPEAGLRSFGHRAFECDEDDKHRKRRNQTLPVALKWAMIVCFAWGLFVVVVGMASRTSGANVSFFSARARLSESERGLKDKEDSPDFYHEREQENMSQSVQADDRSESPMGGEEFGVGEGAAPQTETESSWEGRMATGRAHLLKGVALALQELIATRGQSPLSALRHDPGPTSPDFSEALSHIEQSANVLAHSNSGELEIIERDYVNATTVLALLRLHEGNFDEVFRLVGVLQSQVDLDPEEKSLLALLQGYVQEAQGTDKAGMFFALAREYDPKGCHESLLDTSYQPPHYKLSAGIPAERPAYWPALADLFVFRELYTRQHALSPAASWPGTVWSEAAQSDKDRHGANIGWGLHSAGVARAADLFAAQDFVILREFLHPFELAVLERHYQARAQGGDVEYDQHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYERRNGVVPQLKPHTDREDNEVTVSAQIYSDQAHSQWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPDELSTVSSLLLHFVDRHFDFFDYKIARQRQDPSI 578          
BLAST of EWM24581.1 vs. NCBI_GenBank
Match: gi|857978454|emb|CEO95868.1| (hypothetical protein PBRA_004581 [Plasmodiophora brassicae])

HSP 1 Score: 157.918 bits (398), Expect = 1.676e-38
Identity = 146/466 (31.33%), Postives = 208/466 (44.64%), Query Frame = 0
Query:  120 SPMGGEEFGVGEGAAPQTETESSWEGRMATGRAHLLKGVALALQELIATRGQSPLSALRHDPGPTSPDFSEALSHIEQSANVLAHSNSGELE-IIERDYVNATTVLALLRLHEGNFDEVFRLVGVLQSQVDLDPEEKSLLALLQGYVQEAQG-TDKAGMFFALAREYDPKGCHESLLDTSYQPPHYKLSAGIPAERPAYWPALADLFVFRELYTRQHALSPAASWPGTVWSEAAQSDKDRHGANIGWGLHSAGVARAADLFAAQDFVILREFLHPFELAVLERHYQARAQGGDVE-YDQHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLC-HYERRNG-VVPQLKPHTDREDNEVTVSAQIY--SDQAHSQWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPDELSTVSSLLLHFVDRHFDFFDYKIARQRQDPSI 578
            +PMG  +  V      +T   +  E  M   RA      A+ L  L A      L  +  + G   PD  E L   +Q  +  A   S + E ++ R         ALL    G+     RL+  +       P  K+   L  GYV E  G    A   F+ ARE  P   HE+     Y          IPA  P Y   L  L  +R+ Y   +A    +S      S    S  D  G  +        +  A D+    DFV+LR FL P+E   ++  Y        ++ +D++L R  +Y DR+ ++L  R T  +N I   P+KH YSFLC H    N    P LKPH DREDNE T+S Q++  + +    WPI+V         + W+ KP    +++  + +GDA++F GRRH H+R+ MP    + SSLLLH+V  HFD+ D+K  RQ QDP+I
Sbjct:   48 NPMG--QLAVVASERARTSPTAYAERLMKKYRARKDYRAAMQLGRLYA------LQLIESNKGSELPDDEELLRLAQQWFDEAAKLGSDQCEPLLSR---------ALLHFVIGDDKAAKRLLRKVAEFAS--PACKAESDLYNGYVLEFDGDAPNAKAKFSSAREELP-SIHENFYSRVYA----HTDPVIPA--PKYEKRLRLLSAYRDFYHGFYADRNQSSAREFNPSHVMASGVDIRGGTLN-------LDNANDVLNKNDFVVLRAFLTPWETRTVQALYADLIDDKTIDNFDENLSRTITYNDRISHWLGQRYTDAVNGIVGEPVKHVYSFLCWHSPGPNPHNRPVLKPHIDREDNEFTISIQLHYVNTEGDPSWPIWVHVPTQEDTRAGWKDKPPRSESVEVRMLDGDAILFRGRRHVHWRDEMPVSGLSFSSLLLHYVHEHFDWRDFKYVRQAQDPAI 480          
BLAST of EWM24581.1 vs. NCBI_GenBank
Match: gi|923138671|ref|XP_013762800.1| (hypothetical protein AMSG_00526 [Thecamonas trahens ATCC 50062] >gi|906555506|gb|KNC48749.1| hypothetical protein AMSG_00526 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 145.206 bits (365), Expect = 9.286e-34
Identity = 93/239 (38.91%), Postives = 124/239 (51.88%), Query Frame = 0
Query:  353 SDKDRHGANIGW-GLHSAGVARAADL---FAAQDFVI--LREFLHPFELAVLERHYQARAQGGDVEY-DQHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYE---RRNGVVPQLKPHTDREDNEVTVSAQIY---SDQAHSQWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPDELSTVSSLLLHFVDRHFDFFDYKIARQRQDPSI 578
            SD      +IGW GL +   +R A      A  DF    L+  L P+EL +L  +Y +   G  V + D   GR T+  +RVG FLN  L  L   +  RP+K AYSF   Y    R       L PHTDREDN+ T S Q+       A + WP+YVD  ETLP  +SWR +P   +     + +GD L+F GR H H+R  +P  +S V++++LH+VD  FD   YK  RQ  DP I
Sbjct:  296 SDTTAEPVSIGWSGLATTNASRVAGAGAELAGNDFGYGHLQHVLSPYELTLLVEYYDSCVDGEFVVWEDLEQGRRTAKSERVGYFLNVALAPLAEAVLSRPVKVAYSFYSDYAIDPRLGQPAHALFPHTDREDNQYTFSIQVAFQGEPGADAHWPLYVDQLETLPMRASWRQQPDRSTTTAVYLVSGDGLLFQGRSHIHFRSPLPKGVSRVANIILHYVDSDFDLRHYK-ERQWIDPDI 533          
BLAST of EWM24581.1 vs. NCBI_GenBank
Match: gi|569390644|gb|ETO17811.1| (hypothetical protein RFI_19497, partial [Reticulomyxa filosa])

HSP 1 Score: 105.531 bits (262), Expect = 1.014e-21
Identity = 73/216 (33.80%), Postives = 106/216 (49.07%), Query Frame = 0
Query:  366 LHSAGVARAADLFAAQDFVILREFLHPFELAVLERHYQARAQGGDVE----YDQHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYE-RRNGVVPQLKPHTDREDNEVTVSAQIYSDQAHSQ-WPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPDELSTVSSLLLHFVDRHFDFFDYKIARQRQD 575
            L +  +  A   F+ +  V+L+  L P E   L +++    + G  E    YD  L R+    DRV       L  L+  I  RP+K AYSFLC Y+ +++   P L  HTDREDNE T S  +  D   S  +PIY      +    ++   P     ++     GDAL+F GR+H H+R  M  +L T  ++L H+V   FDF D+K   QRQ+
Sbjct:   59 LGTRNIENARQEFSRKGAVLLKNILSPLECEFLSKYFADAIRRGYPESVADYDSGLVRSIFNSDRVSFLWLTELNDLMTRIVGRPVKKAYSFLCGYKTQQHNRRPWLLGHTDREDNEFTFSITLTHDGPKSPPFPIYAHKKRMVSRRKNY-AFPGFDQVLEFVNDIGDALIFKGRQHIHFRNDMDPKLDTYWTILFHYVPLEFDFVDFK---QRQE 270          
BLAST of EWM24581.1 vs. NCBI_GenBank
Match: gi|913621260|gb|AKV03793.1| (hypothetical protein AKJ09_10456 [Labilithrix luteola])

HSP 1 Score: 80.1073 bits (196), Expect = 2.244e-12
Identity = 70/254 (27.56%), Postives = 112/254 (44.09%), Query Frame = 0
Query:  318 PALADLFVFRELYTRQHALSPAASWPGTVWSEAAQSDKDRHGANIGWGLHSAGVARAADLFAA---QDFVILREFLHPFELAVLERHYQARAQGGDVEYD--QHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYERRNGVVPQLKPHTDREDNEVTVSAQIYSD---QAHSQWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPDELSTVSSLLLHFVDRHFD 563
            P+ A+  +  E+  R H + P+       WSE+                  A  AR  D  A+    +FV++R+ L+P +L ++ R+Y+A +  G    D  Q   R+  + + V  F++ +L  LLN I  +P+K +Y +L  YE   G V  L  HTDR      +S    +D    A + WPIY++                 G A    +  GD +++ G    H+R+A PD   T +    HFVD  F+
Sbjct:  194 PSRANTILRSEILRRAHVVVPSD------WSESR---------------GKAWEARVRDCRASLERDEFVVIRDLLNPIQLQLMRRYYRAASLAGAFMLDDGQVAKRSWCHNEDVARFVHSQLVDLLNRIVPQPIKASYCYLGLYE--PGAV--LARHTDRAQCVWNLSVPFDADPETDADTAWPIYLEV---------------RGEARPVRLGIGDGVLYRGTDLPHWRDAQPDGHRT-TVCFFHFVDETFE 406          
BLAST of EWM24581.1 vs. NCBI_GenBank
Match: gi|1098269909|emb|SFP52070.1| (hypothetical protein SAMN03159417_02293 [Ralstonia sp. NFACC01])

HSP 1 Score: 72.4034 bits (176), Expect = 2.259e-10
Identity = 61/197 (30.96%), Postives = 105/197 (53.30%), Query Frame = 0
Query:  372 ARAADLFAAQDFVILREFLHPFELAVLERHYQARAQGGDVEY--DQHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYERRNGVVPQLKPHTDREDNEVTVSAQI-YSDQA--HSQWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPD-ELSTVSSLLLHFVDRHF 562
            ARA+  FA +++ ++ + LHP+E+AVL R+ +   + G + +   Q   R  ++ D +   L  RLT L++ +   P+K +Y++L  Y +  G V  L  H DR   E +++  + Y+ +    + WPI +     LP+           + +      GDALV+ G R  H+REA+P+  +ST  SLLLH+V+ +F
Sbjct:  115 ARAS--FARENYGVVTDALHPYEVAVLRRYLRHGVRSGAIRFGDPQVPRRYRAHNDPMLRTLQARLTPLISHVVGAPVKPSYAYLAAYTQ--GAV--LHRHVDRPQCEYSLTIAVDYTPEPTLEASWPIRLG----LPD-----------AEVLVYQSLGDALVYAGPRVVHFREALPEGHIST--SLLLHYVNLNF 288          
BLAST of EWM24581.1 vs. NCBI_GenBank
Match: gi|640546535|ref|WP_024978670.1| (hypothetical protein [Ralstonia pickettii])

HSP 1 Score: 69.707 bits (169), Expect = 1.873e-9
Identity = 60/197 (30.46%), Postives = 104/197 (52.79%), Query Frame = 0
Query:  372 ARAADLFAAQDFVILREFLHPFELAVLERHYQARAQGGDVEY--DQHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYERRNGVVPQLKPHTDREDNEVTVSAQI-YSDQA--HSQWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPD-ELSTVSSLLLHFVDRHF 562
            ARA+  FA + + ++ + LHP+E+AV+ R+ +   + G + +   Q   R  ++ D +   L  RLT L++ +   P+K +Y++L  Y +  G V  L  H DR   E +++  + Y+ +    + WPI +     LP+           + +      GDALV+ G R  H+REA+P+  +ST  SLLLH+V+ +F
Sbjct:  111 ARAS--FARESYGVVTDALHPYEVAVVRRYLRHGVRTGAIRFGDPQVPRRYRAHNDPMLRTLQARLTPLISHVVGVPVKPSYAYLAAYTQ--GAV--LHRHVDRPQCEYSLTIAVDYTPEPTLEASWPIRLG----LPD-----------AEVLVYQSLGDALVYAGPRVVHFREALPEGHIST--SLLLHYVNLNF 284          
BLAST of EWM24581.1 vs. NCBI_GenBank
Match: gi|653768928|ref|WP_027679067.1| (hypothetical protein [Ralstonia sp. UNC404CL21Col])

HSP 1 Score: 69.3218 bits (168), Expect = 2.494e-9
Identity = 60/197 (30.46%), Postives = 103/197 (52.28%), Query Frame = 0
Query:  372 ARAADLFAAQDFVILREFLHPFELAVLERHYQARAQGGDVEY--DQHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYERRNGVVPQLKPHTDREDNEVTVSAQI-YSDQA--HSQWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPD-ELSTVSSLLLHFVDRHF 562
            ARA+  FA + + ++ + LHP+E+A + R+ +   + G + +   Q   R  ++ D V   L  RLT L++ +   P+K +Y++L  Y +  G V  L  H DR   E +++  + Y+ +    + WPI +     LP+           + +      GDALV+ G R  H+REA+P+  +ST  SLLLH+V+ +F
Sbjct:  111 ARAS--FARESYGVVTDALHPYEVAAVRRYLRHGVRTGAIRFGDPQVPRRYRAHNDPVLQTLQTRLTPLISHVVGVPVKPSYAYLAAYTQ--GAV--LHRHVDRPQCEYSLTIAVDYTPEPTLEASWPIRLG----LPD-----------AEVLVYQSLGDALVYAGPRVVHFREALPEGHIST--SLLLHYVNLNF 284          
BLAST of EWM24581.1 vs. NCBI_GenBank
Match: gi|1131010828|ref|WP_075772039.1| (hypothetical protein [Rhodocista sp. MIMtkB3])

HSP 1 Score: 66.6254 bits (161), Expect = 4.158e-8
Identity = 56/191 (29.32%), Postives = 80/191 (41.88%), Query Frame = 0
Query:  378 FAAQDFVILREFLHPFELAVLERHYQARAQGGDVEYDQHLG-RATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYERRNGVVPQLKPHTDREDNEVTVSAQI---YSDQAHSQWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPDELSTVSSLLLHFVDRHFDF 564
             AAQ FV++   L P  LA  + +  A    G  E+      R T + D VG    H        +  RPL  +Y+FL  Y   +     L  H DR   E T+S  I           WP+ +            RP P + + ++   + GD +VF GRR  H R  +P E    ++LLLH+V  H D+
Sbjct:  199 LAAQGFVLVPGLLPPAHLAAWQAYADALVAAGLTEHSAKAADRDTYHGDPVGTLFLHLFRPAAEALAGRPLVPSYAFLSAYRAAS----ALDEHLDRPPCEYTLSLHIDHRPRPDGPVPWPLRI------------RPGP-DTAPVELRCRLGDGVVFRGRRLPHSRPRLP-EGDRSTTLLLHYV--HPDY 369          
BLAST of EWM24581.1 vs. NCBI_GenBank
Match: gi|1052386604|emb|SCG03510.1| (hypothetical protein GA0115259_108382 [Streptomyces sp. MnatMP-M17])

HSP 1 Score: 66.2402 bits (160), Expect = 5.630e-8
Identity = 55/188 (29.26%), Postives = 86/188 (45.74%), Query Frame = 0
Query:  380 AQDFVILREFLHPFELAVLERHYQ-ARAQG---GDVEYDQHLGRATSYQDRVGNFLNHRLTGLLNTIGKRPLKHAYSFLCHYERRNGVVPQLKPHTDREDNEVTVSAQIYSDQAHS-QWPIYVDTTETLPEHSSWRPKPSEGSAIQCDIKNGDALVFLGRRHTHYREAMPDELSTVSSLLLHFVDRHF 562
            A D  +LR    P  +A L RH++  RA+G    D E  +   R   Y D V  F+  +LTG +      PL+ +Y++   Y  R G    L+ H DR      VS  + +D   +  WP ++ T     +H+              ++  GDA+V+ G  H H+R+ +P +   V+  LLH+VD  F
Sbjct:  226 ADDVAVLRGTFPPLFVAALRRHFRRMRAEGYFSTDREQVRDGRRDGMYCDAVTLFVQQQLTGAVARWAGSPLRPSYTWAVTY--RPGAA--LERHRDRPQCRWNVSLCVDTDPGDAGPWPFHIRTGTR--QHT-------------VELGMGDAVVYSGTDHEHWRDPLPPD-RVVTMCLLHYVDPDF 393          
The following BLAST results are available for this feature:
BLAST of EWM24581.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106097|gb|EWM24581.1|0.000e+0100.00hypothetical protein Naga_100062g24 [Nannochlorops... [more]
gi|857978454|emb|CEO95868.1|1.676e-3831.33hypothetical protein PBRA_004581 [Plasmodiophora b... [more]
gi|923138671|ref|XP_013762800.1|9.286e-3438.91hypothetical protein AMSG_00526 [Thecamonas trahen... [more]
gi|569390644|gb|ETO17811.1|1.014e-2133.80hypothetical protein RFI_19497, partial [Reticulom... [more]
gi|913621260|gb|AKV03793.1|2.244e-1227.56hypothetical protein AKJ09_10456 [Labilithrix lute... [more]
gi|1098269909|emb|SFP52070.1|2.259e-1030.96hypothetical protein SAMN03159417_02293 [Ralstonia... [more]
gi|640546535|ref|WP_024978670.1|1.873e-930.46hypothetical protein [Ralstonia pickettii][more]
gi|653768928|ref|WP_027679067.1|2.494e-930.46hypothetical protein [Ralstonia sp. UNC404CL21Col][more]
gi|1131010828|ref|WP_075772039.1|4.158e-829.32hypothetical protein [Rhodocista sp. MIMtkB3][more]
gi|1052386604|emb|SCG03510.1|5.630e-829.26hypothetical protein GA0115259_108382 [Streptomyce... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6106rna6106Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications