EWM24577.1, cds6083 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|585106093|gb|EWM24577.1| (Breast carcinoma amplified sequence 2 [Nannochloropsis gaditana]) HSP 1 Score: 501.901 bits (1291), Expect = 1.074e-179 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query: 1 MQLSTSIAKDSGSEPTMHPSLEQLNLDALPYIDGEMDPDIRARVDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAALEGHKKNENEVEEDAL 247
MQLSTSIAKDSGSEPTMHPSLEQLNLDALPYIDGEMDPDIRARVDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAALEGHKKNENEVEEDAL
Sbjct: 1 MQLSTSIAKDSGSEPTMHPSLEQLNLDALPYIDGEMDPDIRARVDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAALEGHKKNENEVEEDAL 247
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|299473091|emb|CBN77484.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 135.576 bits (340), Expect = 5.505e-36 Identity = 77/181 (42.54%), Postives = 105/181 (58.01%), Query Frame = 0
Query: 44 VDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRT 224
V LI EEM F DYLAD+P+P F KS + +E RV A KP+ +D SRY + P D AW+ AL+N RAQ EH NR++N+ELLQN+ +WL +N+ E + + + + R++AE +NL RKT QE L NL RKR E N+++Q AC LR E+KR +
Sbjct: 5 VHSLIEEEM--AAFEPPDYLADKPLPTTRF-KSPLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREDAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFKA 182
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|552827634|ref|XP_005847268.1| (hypothetical protein CHLNCDRAFT_35582 [Chlorella variabilis] >gi|307106922|gb|EFN55166.1| hypothetical protein CHLNCDRAFT_35582 [Chlorella variabilis]) HSP 1 Score: 136.732 bits (343), Expect = 6.598e-36 Identity = 74/199 (37.19%), Postives = 111/199 (55.78%), Query Frame = 0
Query: 26 LDALPYIDGEMDPDIRARVDQLILEEMRNPRFPKRDYLAD-RPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLR 223
+D+LPY+DG + P + +DQLI +EMR+ DYL D P+PE F+ + + E+ RVAAG+ M +D +RY P P + D +WR AL+N AQ EH NR+VN+ELL F PD W +N +L +F L +L +R+ + +N RK +Q L L + ++ N E++ AC L E+ +R
Sbjct: 25 VDSLPYVDG-LSPAEKQAIDQLIEDEMRSSSKRPSDYLGDLEPLPESRFKDNGLLVKEMARVAAGEGMQAMDTARYGLDPPPPTKRNDYASWRAALDNAYAQLEHQYNRLVNLELLLKFGPDAWRMHNEQLASFVARLQSQLADVRRRVDDLNRERKLQQHAAGAELGALEAEYLGLVHKNAEIEAACRGLEAEVAAMR 222
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|971511666|dbj|GAQ86534.1| (BCAS2 [Klebsormidium nitens]) HSP 1 Score: 134.806 bits (338), Expect = 3.359e-35 Identity = 80/208 (38.46%), Postives = 114/208 (54.81%), Query Frame = 0
Query: 25 NLDALPYID--GEMDPDIRARVDQLILEEMRNPRFPKRDYLADRP-MPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASK 229
++DALPYID G D + V+++I +EM+ DYLA+ P P LNFE +A E ERV AGKP PLD SRY P QGDL AWR+A+ N +AQ H RI N++L+ + + WL +N+ L+ L E+ R E + N RK+ QE A + L+ + E + NL++ AC +L ++ LR + A K
Sbjct: 27 DIDALPYIDMQGVTDQSWKKEVERMIADEMKRSTKKPADYLAELPPAPTLNFENCPLLAKEYERVKAGKPPIPLDNSRYKVDPPIKSRQGDLAAWRSAVANAQAQLRHQEIRIENLDLMLKYGANAWLTHNQHLDATSTRLQGIQEAYRDEIDTTNKQRKSTQESAAFEIDRLSSQWLELVRKNLDISAACQVLEEKVDALRQEGAEK 234
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|659066815|ref|XP_008462680.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo]) HSP 1 Score: 132.494 bits (332), Expect = 4.574e-34 Identity = 78/220 (35.45%), Postives = 118/220 (53.64%), Query Frame = 0
Query: 13 SEPTMHPSLEQLNLDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLAD-RPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKA 230
S+P S + +DALPYID + DP ++A VD+L+ EEMR D+L D P+P+L FE +A E ERV AG+P PLD +RY + P P + D AW+ L + H R+ N++L+ + PD+W +N++LE + K + ++ E +N RK Q+ A L L+ + E N+E+Q AC L +I+ LR + A K
Sbjct: 20 SQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKG 239
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|449439443|ref|XP_004137495.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] >gi|700209064|gb|KGN64160.1| hypothetical protein Csa_1G042680 [Cucumis sativus]) HSP 1 Score: 131.339 bits (329), Expect = 1.274e-33 Identity = 77/220 (35.00%), Postives = 117/220 (53.18%), Query Frame = 0
Query: 13 SEPTMHPSLEQLNLDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLAD-RPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKA 230
S+P S + +DALPYID + DP ++A VD+L+ EEMR D+L D P+P+ FE +A E ERV AG+P PLD +RY + P P + D AW+ L + H R+ N++L+ + PD+W +N++LE + K + ++ E +N RK Q+ A L L+ + E N+E+Q AC L +I+ LR + A K
Sbjct: 20 SQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKG 239
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|168026312|ref|XP_001765676.1| (predicted protein [Physcomitrella patens] >gi|162683102|gb|EDQ69515.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 130.568 bits (327), Expect = 1.691e-33 Identity = 74/208 (35.58%), Postives = 118/208 (56.73%), Query Frame = 0
Query: 25 NLDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLADRP-MPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKA 230
+DALPYID + DP ++A VD++I EEMR D+LA+ P +P +N + +A E +RV AGK LD SRY + P + D+ AW++A+ N +AQ +H R+ N+EL+ N+ W+ +N+ LE F+ L ++E E++N RK Q+ A L+ L+ + E NL++++AC L E+ +LR + K
Sbjct: 31 TVDALPYIDHDYADPKVKAEVDKMIAEEMRLSSKKPSDFLAELPPVPSINAQDHPMLAKEFDRVRAGKAPVALDLSRYGLEPPPVNKRNDVGAWKSAVQNAKAQLQHQTLRLENLELMLNYGTTAWIVHNQHLEAFQARLRDTALEYQREIEILNRERKLNQQAAAVELNLLSSQWKEISQKNLDIEEACLKLEAEVLKLREEAEKKG 238
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|697101311|ref|XP_009595455.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis] >gi|697101313|ref|XP_009595462.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis] >gi|697101315|ref|XP_009595468.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis] >gi|697101317|ref|XP_009595478.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis]) HSP 1 Score: 129.413 bits (324), Expect = 6.181e-33 Identity = 76/202 (37.62%), Postives = 111/202 (54.95%), Query Frame = 0
Query: 26 LDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLADRP-MPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTD 225
+DALPYID E DP ++ VD+L+ EEMR D+L D P +P+ NFE +A E ERV AGKP +D SRY + P + D AW+ AL + +H R+ N++L+ PDVW YN+ LE + ++ L + E +N RK Q+ A L+ L+ + E N+E+Q AC L +I++LRT+
Sbjct: 28 IDALPYIDDEYGDPKMKEEVDRLVEEEMRRSSKKPSDFLKDLPPLPKFNFENHPMLAREYERVRAGKPPVQIDTSRYGLEVPPVNKRNDETAWKQALQKAQRLLQHQVIRLENLDLMSKHGPDVWKLYNQRLEAIFARMQSQVVELNGKIETVNRERKYHQQNTAYELNALSIQWRELCLKNMEIQSACVELEDQIEQLRTE 229
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|1000945916|ref|XP_002529563.2| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Ricinus communis]) HSP 1 Score: 129.028 bits (323), Expect = 9.468e-33 Identity = 79/217 (36.41%), Postives = 117/217 (53.92%), Query Frame = 0
Query: 26 LDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLADRP-MPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKK-PDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAA-LEGHKKN 238
+DALPYID E +P I+A VD+L+ EEMR D+L D P +P FE + E ERV AGKP LD SRY+ P D AW+ AL + +H R+ N+EL+ + PDVW+ +NR LE + K + ++ E +N RK Q+ A L+ L+ + E N+E+Q AC + M+I+ L+ + A ++ LE + +N
Sbjct: 32 VDALPYIDDEYGNPSIKAEVDRLVEEEMRRSHKKPSDFLKDLPPLPTFTFENYPMLGKEYERVRAGKPPVTLDFSRYSHLDLPSANKMNDETAWKQALQRGQRLLQHQVIRLENLELMSKYGPDVWIQHNRTLEAMLSRMQKLAQEQNEKIEAVNRERKYHQQNTAYELNALSMQWKELCLKNIEIQAACTKIEMQIEELKKEAAERSWNLEANAEN 248
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|747053522|ref|XP_011072927.1| (pre-mRNA-splicing factor SPF27 homolog [Sesamum indicum]) HSP 1 Score: 128.642 bits (322), Expect = 1.318e-32 Identity = 74/207 (35.75%), Postives = 113/207 (54.59%), Query Frame = 0
Query: 26 LDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLAD-RPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKA 230
+DALPYID + DP ++ VD+L+ EEMR D+L D P+P+ FE +A E ERV AGKP +D SRY + P + D AWR AL + +H R+ N++L+ P+VW YN++LE F + ++ L + E +N RK Q+ A L+ L+ + E N+E+Q ACA + I+ L+++ A +
Sbjct: 30 IDALPYIDDDYGDPKVKEEVDRLVEEEMRRSSKKPSDFLKDLPPLPKFKFEGHPMLAREYERVRAGKPPVQMDTSRYGLEVPPVNKRNDETAWRQALQRAQRLLQHQVIRLENLDLMSKHGPEVWKLYNQQLEAFLSRMQSQVLELNGKIEAVNRERKYHQQHTAYELNALSTQWRELCLKNIEIQTACAEIESRIEELKSEAARRG 236 The following BLAST results are available for this feature:
BLAST of EWM24577.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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