EWM24577.1, cds6083 (CDS) Nannochloropsis gaditana

Overview
NameEWM24577.1
Unique Namecds6083
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:562499..562567 -
Alignment locationCM002467.1:562284..562393 -
Alignment locationCM002467.1:562077..562193 -
Alignment locationCM002467.1:561889..561990 -
Alignment locationCM002467.1:561653..561779 -
Alignment locationCM002467.1:561343..561561 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24577.1
ProductBreast carcinoma amplified sequence 2
Orig transcript idgnl|cribi|Naga_100062g15.900.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:562499..562567 -
CM002467.1supercontigCM002467.1:562284..562393 -
CM002467.1supercontigCM002467.1:562077..562193 -
CM002467.1supercontigCM002467.1:561889..561990 -
CM002467.1supercontigCM002467.1:561653..561779 -
CM002467.1supercontigCM002467.1:561343..561561 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006397mRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR008409SPF27
Homology
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|585106093|gb|EWM24577.1| (Breast carcinoma amplified sequence 2 [Nannochloropsis gaditana])

HSP 1 Score: 501.901 bits (1291), Expect = 1.074e-179
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:    1 MQLSTSIAKDSGSEPTMHPSLEQLNLDALPYIDGEMDPDIRARVDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAALEGHKKNENEVEEDAL 247
            MQLSTSIAKDSGSEPTMHPSLEQLNLDALPYIDGEMDPDIRARVDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAALEGHKKNENEVEEDAL
Sbjct:    1 MQLSTSIAKDSGSEPTMHPSLEQLNLDALPYIDGEMDPDIRARVDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAALEGHKKNENEVEEDAL 247          
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|299473091|emb|CBN77484.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 135.576 bits (340), Expect = 5.505e-36
Identity = 77/181 (42.54%), Postives = 105/181 (58.01%), Query Frame = 0
Query:   44 VDQLILEEMRNPRFPKRDYLADRPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRT 224
            V  LI EEM    F   DYLAD+P+P   F KS  + +E  RV A KP+  +D SRY  + P      D  AW+ AL+N RAQ EH  NR++N+ELLQN+   +WL +N+  E  +  +  + +  R++AE +NL RKT QE     L NL RKR E    N+++Q AC  LR E+KR + 
Sbjct:    5 VHSLIEEEM--AAFEPPDYLADKPLPTTRF-KSPLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREDAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFKA 182          
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|552827634|ref|XP_005847268.1| (hypothetical protein CHLNCDRAFT_35582 [Chlorella variabilis] >gi|307106922|gb|EFN55166.1| hypothetical protein CHLNCDRAFT_35582 [Chlorella variabilis])

HSP 1 Score: 136.732 bits (343), Expect = 6.598e-36
Identity = 74/199 (37.19%), Postives = 111/199 (55.78%), Query Frame = 0
Query:   26 LDALPYIDGEMDPDIRARVDQLILEEMRNPRFPKRDYLAD-RPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLR 223
            +D+LPY+DG + P  +  +DQLI +EMR+      DYL D  P+PE  F+ +  +  E+ RVAAG+ M  +D +RY    P P  + D  +WR AL+N  AQ EH  NR+VN+ELL  F PD W  +N +L +F   L  +L  +R+  + +N  RK +Q      L  L  +    ++ N E++ AC  L  E+  +R
Sbjct:   25 VDSLPYVDG-LSPAEKQAIDQLIEDEMRSSSKRPSDYLGDLEPLPESRFKDNGLLVKEMARVAAGEGMQAMDTARYGLDPPPPTKRNDYASWRAALDNAYAQLEHQYNRLVNLELLLKFGPDAWRMHNEQLASFVARLQSQLADVRRRVDDLNRERKLQQHAAGAELGALEAEYLGLVHKNAEIEAACRGLEAEVAAMR 222          
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|971511666|dbj|GAQ86534.1| (BCAS2 [Klebsormidium nitens])

HSP 1 Score: 134.806 bits (338), Expect = 3.359e-35
Identity = 80/208 (38.46%), Postives = 114/208 (54.81%), Query Frame = 0
Query:   25 NLDALPYID--GEMDPDIRARVDQLILEEMRNPRFPKRDYLADRP-MPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASK 229
            ++DALPYID  G  D   +  V+++I +EM+       DYLA+ P  P LNFE    +A E ERV AGKP  PLD SRY    P    QGDL AWR+A+ N +AQ  H   RI N++L+  +  + WL +N+ L+     L    E+ R E +  N  RK+ QE  A  +  L+ +  E +  NL++  AC +L  ++  LR + A K
Sbjct:   27 DIDALPYIDMQGVTDQSWKKEVERMIADEMKRSTKKPADYLAELPPAPTLNFENCPLLAKEYERVKAGKPPIPLDNSRYKVDPPIKSRQGDLAAWRSAVANAQAQLRHQEIRIENLDLMLKYGANAWLTHNQHLDATSTRLQGIQEAYRDEIDTTNKQRKSTQESAAFEIDRLSSQWLELVRKNLDISAACQVLEEKVDALRQEGAEK 234          
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|659066815|ref|XP_008462680.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo])

HSP 1 Score: 132.494 bits (332), Expect = 4.574e-34
Identity = 78/220 (35.45%), Postives = 118/220 (53.64%), Query Frame = 0
Query:   13 SEPTMHPSLEQLNLDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLAD-RPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKA 230
            S+P    S +   +DALPYID +  DP ++A VD+L+ EEMR       D+L D  P+P+L FE    +A E ERV AG+P  PLD +RY  + P P  + D  AW+  L   +    H   R+ N++L+  + PD+W  +N++LE     + K  +   ++ E +N  RK  Q+  A  L  L+ +  E    N+E+Q AC  L  +I+ LR + A K 
Sbjct:   20 SQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKG 239          
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|449439443|ref|XP_004137495.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] >gi|700209064|gb|KGN64160.1| hypothetical protein Csa_1G042680 [Cucumis sativus])

HSP 1 Score: 131.339 bits (329), Expect = 1.274e-33
Identity = 77/220 (35.00%), Postives = 117/220 (53.18%), Query Frame = 0
Query:   13 SEPTMHPSLEQLNLDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLAD-RPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKA 230
            S+P    S +   +DALPYID +  DP ++A VD+L+ EEMR       D+L D  P+P+  FE    +A E ERV AG+P  PLD +RY  + P P  + D  AW+  L   +    H   R+ N++L+  + PD+W  +N++LE     + K  +   ++ E +N  RK  Q+  A  L  L+ +  E    N+E+Q AC  L  +I+ LR + A K 
Sbjct:   20 SQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKG 239          
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|168026312|ref|XP_001765676.1| (predicted protein [Physcomitrella patens] >gi|162683102|gb|EDQ69515.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 130.568 bits (327), Expect = 1.691e-33
Identity = 74/208 (35.58%), Postives = 118/208 (56.73%), Query Frame = 0
Query:   25 NLDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLADRP-MPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKA 230
             +DALPYID +  DP ++A VD++I EEMR       D+LA+ P +P +N +    +A E +RV AGK    LD SRY  + P    + D+ AW++A+ N +AQ +H   R+ N+EL+ N+    W+ +N+ LE F+  L       ++E E++N  RK  Q+  A  L+ L+ +  E    NL++++AC  L  E+ +LR +   K 
Sbjct:   31 TVDALPYIDHDYADPKVKAEVDKMIAEEMRLSSKKPSDFLAELPPVPSINAQDHPMLAKEFDRVRAGKAPVALDLSRYGLEPPPVNKRNDVGAWKSAVQNAKAQLQHQTLRLENLELMLNYGTTAWIVHNQHLEAFQARLRDTALEYQREIEILNRERKLNQQAAAVELNLLSSQWKEISQKNLDIEEACLKLEAEVLKLREEAEKKG 238          
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|697101311|ref|XP_009595455.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis] >gi|697101313|ref|XP_009595462.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis] >gi|697101315|ref|XP_009595468.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis] >gi|697101317|ref|XP_009595478.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis])

HSP 1 Score: 129.413 bits (324), Expect = 6.181e-33
Identity = 76/202 (37.62%), Postives = 111/202 (54.95%), Query Frame = 0
Query:   26 LDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLADRP-MPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTD 225
            +DALPYID E  DP ++  VD+L+ EEMR       D+L D P +P+ NFE    +A E ERV AGKP   +D SRY  + P    + D  AW+ AL   +   +H   R+ N++L+    PDVW  YN+ LE     +  ++  L  + E +N  RK  Q+  A  L+ L+ +  E    N+E+Q AC  L  +I++LRT+
Sbjct:   28 IDALPYIDDEYGDPKMKEEVDRLVEEEMRRSSKKPSDFLKDLPPLPKFNFENHPMLAREYERVRAGKPPVQIDTSRYGLEVPPVNKRNDETAWKQALQKAQRLLQHQVIRLENLDLMSKHGPDVWKLYNQRLEAIFARMQSQVVELNGKIETVNRERKYHQQNTAYELNALSIQWRELCLKNMEIQSACVELEDQIEQLRTE 229          
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|1000945916|ref|XP_002529563.2| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Ricinus communis])

HSP 1 Score: 129.028 bits (323), Expect = 9.468e-33
Identity = 79/217 (36.41%), Postives = 117/217 (53.92%), Query Frame = 0
Query:   26 LDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLADRP-MPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKK-PDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKAA-LEGHKKN 238
            +DALPYID E  +P I+A VD+L+ EEMR       D+L D P +P   FE    +  E ERV AGKP   LD SRY+    P      D  AW+ AL   +   +H   R+ N+EL+  + PDVW+ +NR LE     + K  +   ++ E +N  RK  Q+  A  L+ L+ +  E    N+E+Q AC  + M+I+ L+ + A ++  LE + +N
Sbjct:   32 VDALPYIDDEYGNPSIKAEVDRLVEEEMRRSHKKPSDFLKDLPPLPTFTFENYPMLGKEYERVRAGKPPVTLDFSRYSHLDLPSANKMNDETAWKQALQRGQRLLQHQVIRLENLELMSKYGPDVWIQHNRTLEAMLSRMQKLAQEQNEKIEAVNRERKYHQQNTAYELNALSMQWKELCLKNIEIQAACTKIEMQIEELKKEAAERSWNLEANAEN 248          
BLAST of EWM24577.1 vs. NCBI_GenBank
Match: gi|747053522|ref|XP_011072927.1| (pre-mRNA-splicing factor SPF27 homolog [Sesamum indicum])

HSP 1 Score: 128.642 bits (322), Expect = 1.318e-32
Identity = 74/207 (35.75%), Postives = 113/207 (54.59%), Query Frame = 0
Query:   26 LDALPYIDGEM-DPDIRARVDQLILEEMRNPRFPKRDYLAD-RPMPELNFEKSFFIATELERVAAGKPMAPLDESRYAGKKPDPGLQGDLQAWRTALNNLRAQEEHLGNRIVNMELLQNFAPDVWLAYNRELETFKGNLDKELESLRKEAELINLSRKTKQEEVAPRLSNLTRKRDETLYTNLELQKACAMLRMEIKRLRTDVASKA 230
            +DALPYID +  DP ++  VD+L+ EEMR       D+L D  P+P+  FE    +A E ERV AGKP   +D SRY  + P    + D  AWR AL   +   +H   R+ N++L+    P+VW  YN++LE F   +  ++  L  + E +N  RK  Q+  A  L+ L+ +  E    N+E+Q ACA +   I+ L+++ A + 
Sbjct:   30 IDALPYIDDDYGDPKVKEEVDRLVEEEMRRSSKKPSDFLKDLPPLPKFKFEGHPMLAREYERVRAGKPPVQMDTSRYGLEVPPVNKRNDETAWRQALQRAQRLLQHQVIRLENLDLMSKHGPEVWKLYNQQLEAFLSRMQSQVLELNGKIEAVNRERKYHQQHTAYELNALSTQWRELCLKNIEIQTACAEIESRIEELKSEAARRG 236          
The following BLAST results are available for this feature:
BLAST of EWM24577.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106093|gb|EWM24577.1|1.074e-179100.00Breast carcinoma amplified sequence 2 [Nannochloro... [more]
gi|299473091|emb|CBN77484.1|5.505e-3642.54conserved unknown protein [Ectocarpus siliculosus][more]
gi|552827634|ref|XP_005847268.1|6.598e-3637.19hypothetical protein CHLNCDRAFT_35582 [Chlorella v... [more]
gi|971511666|dbj|GAQ86534.1|3.359e-3538.46BCAS2 [Klebsormidium nitens][more]
gi|659066815|ref|XP_008462680.1|4.574e-3435.45PREDICTED: pre-mRNA-splicing factor SPF27 homolog ... [more]
gi|449439443|ref|XP_004137495.1|1.274e-3335.00PREDICTED: pre-mRNA-splicing factor SPF27 homolog ... [more]
gi|168026312|ref|XP_001765676.1|1.691e-3335.58predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|697101311|ref|XP_009595455.1|6.181e-3337.62PREDICTED: pre-mRNA-splicing factor SPF27 homolog ... [more]
gi|1000945916|ref|XP_002529563.2|9.468e-3336.41PREDICTED: pre-mRNA-splicing factor SPF27 homolog ... [more]
gi|747053522|ref|XP_011072927.1|1.318e-3235.75pre-mRNA-splicing factor SPF27 homolog [Sesamum in... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6098rna6098Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications