EWM24604.1, cds6062 (CDS) Nannochloropsis gaditana

Overview
NameEWM24604.1
Unique Namecds6062
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:521290..523704 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24604.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100171g10.2662.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:521290..523704 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24604.1 vs. NCBI_GenBank
Match: gi|585106121|gb|EWM24604.1| (hypothetical protein Naga_100171g10 [Nannochloropsis gaditana])

HSP 1 Score: 1669.83 bits (4323), Expect = 0.000e+0
Identity = 804/804 (100.00%), Postives = 804/804 (100.00%), Query Frame = 0
Query:    1 MERARRGGGQGGFGVASMRMTTVSRMTIFFGVVLLVELVTLVCIKHSTLPRDPAPDTGHMFAHAPESQKEGFSRSQEERRETMAINETLPYEPPRLPSPLTVACLSSQRTVSTTAFNLVRILMERVDANSISGWEHDVVGSRPNERLEDILPKVHGKVSTVYKSHAGGAEHHQHADFVVVTYRDPYEIMCSMGRMFQPKIFRSEHKAVEKCRKMARNEAGIKDWAGREGTRSLHINSDVLKSAEGMTEVVRLLMEKWGVQGGSLDPRSITREVMDLESPPEGVFSVANPRSELHPHHITGSGDTEGDCDVLKEVLAQDQVCRAWHDTYAAMFPEGSPSILDERSAHAAVEEARRTLESGGFQIHNGDTGNARPSHNAKRERLASKEARSHIRRHQQGRGAWEADDRSGTGGPDKESHSQISAGEDAYMDVHASSETAFPSDKYFFCLLNGGLNDITVEMWKCIEFARTTQRVLVLAHENYNPVAAPWTPYFTLETIPGLRTMTPYQAATAINHRGRAVSVFPSRLQHHLDPLLGPKPAQGDSPEGLDPRQPFPFKFEKLKHLKFRFENTYHQDVVVFHRQGNVGSGVVALRHIKFAESIRSTFLERWSKLEKPYVALHLRRTDKSCSDEKMERLLQVLHRMGTSDFWPEGPIYVASDHPELPEDFREELEERQKRQVVSFTYHPPVHEQRNALHEDPDEQKMKEMRRHSLGIEGLHLHDDLSPKEKHQTNIDAFVDLLLLAMSEELLTSCGGYSHLARELHQNQDVVFSVLGLPAPGPNDDLDMLLEAAAAARVEPIKGKLAAE 804
            MERARRGGGQGGFGVASMRMTTVSRMTIFFGVVLLVELVTLVCIKHSTLPRDPAPDTGHMFAHAPESQKEGFSRSQEERRETMAINETLPYEPPRLPSPLTVACLSSQRTVSTTAFNLVRILMERVDANSISGWEHDVVGSRPNERLEDILPKVHGKVSTVYKSHAGGAEHHQHADFVVVTYRDPYEIMCSMGRMFQPKIFRSEHKAVEKCRKMARNEAGIKDWAGREGTRSLHINSDVLKSAEGMTEVVRLLMEKWGVQGGSLDPRSITREVMDLESPPEGVFSVANPRSELHPHHITGSGDTEGDCDVLKEVLAQDQVCRAWHDTYAAMFPEGSPSILDERSAHAAVEEARRTLESGGFQIHNGDTGNARPSHNAKRERLASKEARSHIRRHQQGRGAWEADDRSGTGGPDKESHSQISAGEDAYMDVHASSETAFPSDKYFFCLLNGGLNDITVEMWKCIEFARTTQRVLVLAHENYNPVAAPWTPYFTLETIPGLRTMTPYQAATAINHRGRAVSVFPSRLQHHLDPLLGPKPAQGDSPEGLDPRQPFPFKFEKLKHLKFRFENTYHQDVVVFHRQGNVGSGVVALRHIKFAESIRSTFLERWSKLEKPYVALHLRRTDKSCSDEKMERLLQVLHRMGTSDFWPEGPIYVASDHPELPEDFREELEERQKRQVVSFTYHPPVHEQRNALHEDPDEQKMKEMRRHSLGIEGLHLHDDLSPKEKHQTNIDAFVDLLLLAMSEELLTSCGGYSHLARELHQNQDVVFSVLGLPAPGPNDDLDMLLEAAAAARVEPIKGKLAAE
Sbjct:    1 MERARRGGGQGGFGVASMRMTTVSRMTIFFGVVLLVELVTLVCIKHSTLPRDPAPDTGHMFAHAPESQKEGFSRSQEERRETMAINETLPYEPPRLPSPLTVACLSSQRTVSTTAFNLVRILMERVDANSISGWEHDVVGSRPNERLEDILPKVHGKVSTVYKSHAGGAEHHQHADFVVVTYRDPYEIMCSMGRMFQPKIFRSEHKAVEKCRKMARNEAGIKDWAGREGTRSLHINSDVLKSAEGMTEVVRLLMEKWGVQGGSLDPRSITREVMDLESPPEGVFSVANPRSELHPHHITGSGDTEGDCDVLKEVLAQDQVCRAWHDTYAAMFPEGSPSILDERSAHAAVEEARRTLESGGFQIHNGDTGNARPSHNAKRERLASKEARSHIRRHQQGRGAWEADDRSGTGGPDKESHSQISAGEDAYMDVHASSETAFPSDKYFFCLLNGGLNDITVEMWKCIEFARTTQRVLVLAHENYNPVAAPWTPYFTLETIPGLRTMTPYQAATAINHRGRAVSVFPSRLQHHLDPLLGPKPAQGDSPEGLDPRQPFPFKFEKLKHLKFRFENTYHQDVVVFHRQGNVGSGVVALRHIKFAESIRSTFLERWSKLEKPYVALHLRRTDKSCSDEKMERLLQVLHRMGTSDFWPEGPIYVASDHPELPEDFREELEERQKRQVVSFTYHPPVHEQRNALHEDPDEQKMKEMRRHSLGIEGLHLHDDLSPKEKHQTNIDAFVDLLLLAMSEELLTSCGGYSHLARELHQNQDVVFSVLGLPAPGPNDDLDMLLEAAAAARVEPIKGKLAAE 804          
BLAST of EWM24604.1 vs. NCBI_GenBank
Match: gi|585106618|gb|EWM24985.1| (hypothetical protein Naga_100122g18 [Nannochloropsis gaditana])

HSP 1 Score: 266.159 bits (679), Expect = 1.299e-74
Identity = 151/390 (38.72%), Postives = 220/390 (56.41%), Query Frame = 0
Query:  425 DAYMDVHASSETAFPSDKY---FFCLLNGGLNDITVEMWKCIEFARTTQRVLVLAHENYNPVAAPWTPYFTLETIPGLRTMTPYQAATAINH---RG-RAVSVFPSRLQHHLDPLLGPKPAQGDSPEGLDPRQPFPFKFEKLKHLKFRFENTYHQDVVVFHRQGNVGSGVVALRHIKFAESIRSTFLERWSKLEKPYVALHLRRTDKSCSDEK---MERLLQVLHRMGTSDFWPEGPIYVASDHPELPEDFREELEERQKRQVVSFTYHP--------PVHEQRNALHE------DPDEQKMK-EMRRHSLGIEGLHLHDDLSPKEKHQTNIDAFVDLLLLAMSEELLTSCGGYSHLARELHQNQDVVFSVLGLPAPGPNDDLDMLLEAA 789
            DA+ D  A S    P ++     +CL  GG NDI V++W+C+E+A  T+RV++L +ENY PV  P+  YF L+TIPGL  M+ ++AA  I H   RG R       RL   +  LLG      D P       PF      + ++ F  E  Y Q ++V+H++GN G+    +RH+ F+E ++ TFL RW ++ KPYV +H+R TD+ C  +K   + R ++ L R          PIY+A+D+PE   ++R+E E+ Q R++ SFTY P        PV ++R  LH+      D +EQ +  E   H      LHL+  L  +EKHQTN+D FVDLLLLA S+  + SCGGYS LA+ LHQ++ +  + LGL  P   DD+D +L+ A
Sbjct:  306 DAFKDSGAISAGNLPEERVPNMLYCLPGGGFNDIAVQLWRCVEYAIKTERVMILGYENYIPVLPPYEQYFRLKTIPGLSLMSQWEAADRIRHAEARGQRVTKAHGKRLP--ISMLLGNGEETEDGP-------PFFIATASVPNVAFNPEKNYSQHILVYHKKGNRGTPESTIRHVLFSEEVKRTFLLRWGQISKPYVGMHVRGTDRKCGRKKAPQVMRKVKFLRRRLIG-----APIYLATDNPEATIEYRDEFEDNQGRKIFSFTYFPSHQKGVEEPVKDRRMFLHDTGTGQTDTNEQGLAGETDVHI----PLHLNQALKAEEKHQTNVDGFVDLLLLAFSKRFIKSCGGYSQLAKLLHQDKSLALATLGLSLPHDTDDVDSVLQEA 677          
BLAST of EWM24604.1 vs. NCBI_GenBank
Match: gi|585099088|gb|EWM19967.1| (hypothetical protein Naga_102579g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 202.986 bits (515), Expect = 6.699e-57
Identity = 93/192 (48.44%), Postives = 125/192 (65.10%), Query Frame = 0
Query:  149 DILPKVHGKVSTVYKSHAGGAEHHQHADFVVVTYRDPYEIMCSMGRMFQPKIFRSEHKAVEKCRKMARNEAGIKDWAGREGTRSLHINSDVLKSAEGMTEVVRLLMEKWGVQGGSLDPRSITREVMDLESPPEGVFSVANPRSELHPHHITGSGDTEGDCDVLKEVLAQDQVCRAWHDTYAAMFPEGSPSIL 340
            D++PK  G+VS VYKSH    E+H  ADF +VT+RDPY+++CSMG MF+P  F    +A+  CR MA NE  I   A + G+ +LH++   L SAE M +VV  +  KW V GG +D R + REV++L +PPEG+F VA+PR+ELH  HIT S  T+ DC  L+  L  D VCRAWHD Y   FP G+  ++
Sbjct:    2 DVVPKAKGQVSMVYKSHWADQEYHNSADFFLVTHRDPYDMVCSMGNMFRPVFFTDFKRAISSCRGMADNEKRILRVASKSGS-ALHVHHSALYSAESMAQVVEAMALKWNVTGGKIDARGVAREVLELRAPPEGIFPVAHPRTELHADHITASSSTKKDCTELRRALEADSVCRAWHDRYEQSFPPGTAQLV 192          
BLAST of EWM24604.1 vs. NCBI_GenBank
Match: gi|585106631|gb|EWM24996.1| (hypothetical protein Naga_100068g30, partial [Nannochloropsis gaditana])

HSP 1 Score: 79.7221 bits (195), Expect = 3.974e-14
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   88 TLPYEPPRLP---SPLTVACLSSQRTVSTTAFNLVRILMERVDANSISGWEHDVVGSR 142
            T+P E P LP    PL VACL++ RTVSTTA+NL R+LMERVD NS+SGWE DV GS+
Sbjct:   62 TVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDPNSVSGWEKDVTGSK 119          
BLAST of EWM24604.1 vs. NCBI_GenBank
Match: gi|585106628|gb|EWM24994.1| (hypothetical protein Naga_101727g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 75.485 bits (184), Expect = 2.277e-12
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0
Query:   88 TLPYEPPRLP---SPLTVACLSSQRTVSTTAFNLVRILMERVDANSISGWE----HDVVGSR 142
            T+P E P LP    PL VACL++ RTVSTTA+NL R+LMERVD+NS+SGWE     DV G +
Sbjct:   83 TVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDSNSVSGWEKNPIQDVAGKK 144          
BLAST of EWM24604.1 vs. NCBI_GenBank
Match: gi|1200699691|gb|OUX93666.1| (hypothetical protein CBB77_08310 [Henriciella sp. TMED17])

HSP 1 Score: 74.7146 bits (182), Expect = 7.387e-11
Identity = 88/346 (25.43%), Postives = 144/346 (41.62%), Query Frame = 0
Query:  442 KYFFCLLNGGLNDITVEMWKCIEFARTTQRVLVL--AHENYNPVAAPWTPYFTLETIPGLRTMTPYQAATAINHRGRAVSVFPSRLQHHLDPLLGPKPAQGDSPEGLDPRQPFPFKFEKLKHLKFRFENTYHQDVVVFHRQGNVGSGVVALRHIKFAESIRSTFLERWSKLEKPYVALHLRRTDKSCSDEKMERLLQVLHRMGTSDFWPEGPIYVASDHPELPEDFREELEERQKRQVVSFTYHPPVHEQRNALHEDPDEQKMKEMRRHSLGIEGLHLHDDLSPKEKHQTNIDAFVDLLLLAMSEELLT----------SCGGYSHLARELHQNQDVVFSVLGLPA 775
            KY  C   GGLNDI  ++ KC  +     R +++   HEN       ++ YF     P  + +    +A AI  +   ++VFP+ +Q  L+        QGD    L        + E  + L F F+  Y Q V++ H  G     V AL  I     I     ER  K+ + Y A+H+R TD   +D K       L     S    + P+++A+D+  +   F++ L E    +V SF+  P   E++ ALH                        DD + +     N DA +DLL+L+++  L            +  G+S LA  L +++ ++ ++L  P 
Sbjct:    3 KYILCRPEGGLNDILCQIEKCCRYGERYNRTVIVDTNHENARNFHDDFSRYF----FPKHKRLIL--SAKAIKPKLALMNVFPTGVQGKLNNY--QTKWQGDWRGKL-------LEVESNQLLTFDFDKHYSQQVLLHHSTGGGTDSVFALLRIGVRPHIIKKLSERLQKIGRVYDAVHVRHTDYK-TDYK-----SFLDNYSAS---SQRPLFLATDNKSVVTHFKQALGE---NRVFSFSALP---EKQIALHSAK-------------------FSDDATFRR----NTDAILDLLMLSLAVRLQIFQINQNPIGATVSGFSQLALNLWESKILIKTLLSNPG 295          
The following BLAST results are available for this feature:
BLAST of EWM24604.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585106121|gb|EWM24604.1|0.000e+0100.00hypothetical protein Naga_100171g10 [Nannochlorops... [more]
gi|585106618|gb|EWM24985.1|1.299e-7438.72hypothetical protein Naga_100122g18 [Nannochlorops... [more]
gi|585099088|gb|EWM19967.1|6.699e-5748.44hypothetical protein Naga_102579g1, partial [Nanno... [more]
gi|585106631|gb|EWM24996.1|3.974e-1465.52hypothetical protein Naga_100068g30, partial [Nann... [more]
gi|585106628|gb|EWM24994.1|2.277e-1259.68hypothetical protein Naga_101727g1, partial [Nanno... [more]
gi|1200699691|gb|OUX93666.1|7.387e-1125.43hypothetical protein CBB77_08310 [Henriciella sp. ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6077rna6077Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications