EWM24667.1, cds6017 (CDS) Nannochloropsis gaditana

Overview
NameEWM24667.1
Unique Namecds6017
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:419458..419761 -
Alignment locationCM002467.1:419123..419316 -
Alignment locationCM002467.1:418836..418997 -
Alignment locationCM002467.1:418504..418662 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24667.1
ProductProtein of unknown function DUF3172
Orig transcript idgnl|cribi|Naga_100055g22.7351.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:419458..419761 -
CM002467.1supercontigCM002467.1:419123..419316 -
CM002467.1supercontigCM002467.1:418836..418997 -
CM002467.1supercontigCM002467.1:418504..418662 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR021511DUF3172
Homology
BLAST of EWM24667.1 vs. NCBI_GenBank
Match: gi|585106189|gb|EWM24667.1| (Protein of unknown function DUF3172 [Nannochloropsis gaditana])

HSP 1 Score: 556.984 bits (1434), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MRLCRGFLYPRLFNACQVRRVYSGAPLPICNMDPRSGRRAKISMQSMYDKEGNRRRRVRSRVNRKGEDADEEGDDEEEEYRAMRPPALDRVRPPPFSRGRPEVGKNRLPFGISWIPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYDK 272
            MRLCRGFLYPRLFNACQVRRVYSGAPLPICNMDPRSGRRAKISMQSMYDKEGNRRRRVRSRVNRKGEDADEEGDDEEEEYRAMRPPALDRVRPPPFSRGRPEVGKNRLPFGISWIPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYDK
Sbjct:    1 MRLCRGFLYPRLFNACQVRRVYSGAPLPICNMDPRSGRRAKISMQSMYDKEGNRRRRVRSRVNRKGEDADEEGDDEEEEYRAMRPPALDRVRPPPFSRGRPEVGKNRLPFGISWIPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYDK 272          
BLAST of EWM24667.1 vs. NCBI_GenBank
Match: gi|298710540|emb|CBJ25604.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 240.35 bits (612), Expect = 4.171e-75
Identity = 111/161 (68.94%), Postives = 134/161 (83.23%), Query Frame = 0
Query:  112 ISWIPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQ-GRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYD 271
            +  +P  LS AL+ G FVLG+GTGVTVDSA+NT+ +DLASRDAID+NAPNP  CQ YG+S +V+D R+FV+FNPF ++V+QAD KPGCVLR++NVV+ LQ  RGLLT+E+V  CK G NTW YVGD+ND PQLSCVYQSDDAQNEFL  NPK G+GEDVYD
Sbjct:  115 VPLLPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLS-NPKYGLGEDVYD 274          
BLAST of EWM24667.1 vs. NCBI_GenBank
Match: gi|397619992|gb|EJK65488.1| (hypothetical protein THAOC_13645 [Thalassiosira oceanica])

HSP 1 Score: 228.794 bits (582), Expect = 8.908e-71
Identity = 113/190 (59.47%), Postives = 135/190 (71.05%), Query Frame = 0
Query:   88 LDRVRPPPFSRGRPEVGKNRLPFGISW------IPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYD 271
            +D +  PP +   P+     +P           +P  +SAALL G FVLG+GTGVTVDS +NTN KDLASRDA+DKNAPNP  C  YGAS +  D R+FVSFNPF+VYV QADVKP CVLR +NVV  L+ R LL D EV  CK   NTWA+VGD+ND+PQLSCVY+S+DAQNEFLE +PK G+GED  D
Sbjct:   67 VDDLGTPPLTGSSPDDTSLSIPSSFGRGDTGMRMPSSVSAALLAGVFVLGIGTGVTVDSQINTNPKDLASRDAVDKNAPNPTLCTTYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPSNVVPVLKERKLLNDNEVRGCKMNMNTWAFVGDLNDQPQLSCVYKSEDAQNEFLE-DPKRGIGEDYLD 255          
BLAST of EWM24667.1 vs. NCBI_GenBank
Match: gi|224011066|ref|XP_002294490.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969985|gb|EED88324.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 219.935 bits (559), Expect = 2.456e-69
Identity = 105/152 (69.08%), Postives = 122/152 (80.26%), Query Frame = 0
Query:  117 QGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGED 268
              +SAALL G FVLG+GTGVTVDS +NTN KDLASRDA+DKNAPNP  C  YGAS +  D R+FVSFNPF+VYV QADVKP CVLR AN+V  L+ R LL D E+  CK   NTWA+VGD+ND+PQLSCVY+S+DAQNEFLE +PK G+GED
Sbjct:    1 SSVSAALLAGVFVLGIGTGVTVDSQINTNPKDLASRDAVDKNAPNPTLCTTYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPANIVPILKERKLLNDNEIRGCKMNMNTWAFVGDLNDQPQLSCVYKSEDAQNEFLE-DPKRGIGED 151          
BLAST of EWM24667.1 vs. NCBI_GenBank
Match: gi|1210520996|dbj|GAX20229.1| (hypothetical protein FisN_12Hh078 [Fistulifera solaris])

HSP 1 Score: 221.09 bits (562), Expect = 6.595e-68
Identity = 103/157 (65.61%), Postives = 123/157 (78.34%), Query Frame = 0
Query:  115 IPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYD 271
            +P+ +S +LL G FVLGVG GVT+DS VNTN KDLASRDAID+ APNP  C + GAS +  D R+FVSFNPF+VYV+QADVKP CVLR ANVV  L+ +GL+ D+EV  CK   NTWA+VG++ D PQLSCVY+S DAQNEFL  NPKLG+GED  D
Sbjct:  100 LPESVSKSLLAGVFVLGVGLGVTIDSQVNTNPKDLASRDAIDQAAPNPTLCAKLGASAMAFDQRVFVSFNPFNVYVSQADVKPACVLREANVVPVLRAKGLINDQEVRACKQNMNTWAFVGNLEDTPQLSCVYKSQDAQNEFLS-NPKLGIGEDYLD 255          
BLAST of EWM24667.1 vs. NCBI_GenBank
Match: gi|1210526299|dbj|GAX15217.1| (hypothetical protein FisN_12Lh078 [Fistulifera solaris])

HSP 1 Score: 220.32 bits (560), Expect = 1.136e-67
Identity = 103/157 (65.61%), Postives = 123/157 (78.34%), Query Frame = 0
Query:  115 IPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYD 271
            +P+ +S +LL G FVLGVG GVT+DS VNTN KDLASRDAID+ APNP  C + GAS +  D R+FVSFNPF+VYV+QADVKP CVLR ANVV  L+ +GL+ D+EV  CK   NTWA+VG++ D PQLSCVY+S DAQNEFL  NPKLG+GED  D
Sbjct:   88 LPESVSKSLLAGVFVLGVGLGVTIDSQVNTNPKDLASRDAIDQAAPNPTLCAKLGASAMAFDQRVFVSFNPFNVYVSQADVKPACVLREANVVPVLRAKGLINDQEVRACKQNMNTWAFVGNLEDTPQLSCVYKSQDAQNEFLS-NPKLGIGEDYLD 243          
BLAST of EWM24667.1 vs. NCBI_GenBank
Match: gi|1072230645|gb|OEU15378.1| (hypothetical protein FRACYDRAFT_269337 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 214.542 bits (545), Expect = 7.263e-65
Identity = 100/157 (63.69%), Postives = 124/157 (78.98%), Query Frame = 0
Query:  115 IPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYD 271
            +P  +S +LL G FVLG+G GVTVDSA+NTN +DL+SRDAID+ APN K C   GAS +  D R+FVSFNPF+VYV QADVKP CVLR++NVV  L+ R L+ D+EV  CK+  NTWA+VGD+++KPQLSCVY+S+DAQNEFLE NP  G+GED  D
Sbjct:  127 LPDAVSKSLLAGIFVLGIGLGVTVDSAINTNPRDLSSRDAIDQAAPNSKLCADMGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRSSNVVPILKDRKLINDKEVFACKSNMNTWAFVGDLDNKPQLSCVYKSEDAQNEFLE-NPTYGIGEDYLD 282          
BLAST of EWM24667.1 vs. NCBI_GenBank
Match: gi|219121668|ref|XP_002181184.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407170|gb|EEC47107.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 199.904 bits (507), Expect = 1.352e-61
Identity = 95/141 (67.38%), Postives = 108/141 (76.60%), Query Frame = 0
Query:  118 GLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLE 258
             +S ALL G FVLGVG GVT+DS VNTN KDLASRDAID  APNP  C + GAS +  D R+FVSFNPF+VYV+QADVKP CVLR ANVV  L+ RGL+ D EV  CK   NTWA+VG ++D PQLSCVY+S DAQNEFL 
Sbjct:    1 SVSKALLAGVFVLGVGLGVTIDSQVNTNPKDLASRDAIDNAAPNPTLCAKLGASAMAFDQRVFVSFNPFNVYVSQADVKPACVLREANVVPILKARGLINDNEVRSCKQNMNTWAFVGSLDDTPQLSCVYRSQDAQNEFLS 141          
BLAST of EWM24667.1 vs. NCBI_GenBank
Match: gi|168001409|ref|XP_001753407.1| (predicted protein [Physcomitrella patens] >gi|162695286|gb|EDQ81630.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 160.999 bits (406), Expect = 4.199e-44
Identity = 73/151 (48.34%), Postives = 105/151 (69.54%), Query Frame = 0
Query:  117 QGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGE 267
            +G +  +L G FVLG+G G+TVD+ +N    ++ASR+ ID+  PNP  C   G S +VLD R+F+SFNPF+VYV+Q +VKPGCVLR +N    L+ RGL+T +EV  CK   NT+ +VGD+   P++SCVY S+ A+N+FL+   K  +G+
Sbjct:  164 RGANRYILAGMFVLGMGAGITVDTVLNVEPNNVASREVIDRQTPNPDVCIANGMSAMVLDQRLFISFNPFNVYVSQTEVKPGCVLRQSN-WSVLEARGLVTSDEVRACKRNMNTFGFVGDLRQAPEISCVYHSESAENQFLKDPSKATLGD 313          
BLAST of EWM24667.1 vs. NCBI_GenBank
Match: gi|1026768210|gb|OAE28412.1| (hypothetical protein AXG93_115s1010 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 159.844 bits (403), Expect = 1.101e-43
Identity = 89/232 (38.36%), Postives = 137/232 (59.05%), Query Frame = 0
Query:   56 RRVRSRVNRKGEDADEEGDD-------------EEEEYRAMRPPALDRVRPPPFSRGRPEVG-------KNRLPFGISWIPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGE 267
            R +RS+ NRKG  +D   D+             ++EE   +R     +   P   R   E+G        +R+  G++ + QG++  +L G FVLG+G G+ VD+ +N    ++ASR+ ID+  PNP  C   G S +VLD R+F++FNPF+VYV+QA+VKPGCVL  +N  + L+ RGL+  EEV  CK   NT+ +VGD+   P+++CVY S+ A+N+FL+   K  +G+
Sbjct:   73 RALRSKENRKGFRSDTPPDEFPRGSSKGPMPSVDDEELPKIREYTRRKESSP--LREDEEIGGWEYRQSPSRVENGVTALTQGVNRYVLGGLFVLGMGAGIAVDTVLNVEPNNIASREVIDRQTPNPDVCIANGMSAMVLDQRLFITFNPFNVYVSQAEVKPGCVLLQSN-WRVLESRGLVNSEEVRDCKRNFNTFGFVGDLRQAPEINCVYHSEAAENQFLKDPSKAALGD 301          
The following BLAST results are available for this feature:
BLAST of EWM24667.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
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01SequenceEWM24667.1CBJ25604.1EJK65488.1XP_002294490.1GAX20229.1GAX15217.1OEU15378.1XP_002181184.1XP_001753407.1OAE28412.1
Match NameE-valueIdentityDescription
gi|585106189|gb|EWM24667.1|0.000e+0100.00Protein of unknown function DUF3172 [Nannochlorops... [more]
gi|298710540|emb|CBJ25604.1|4.171e-7568.94conserved unknown protein [Ectocarpus siliculosus][more]
gi|397619992|gb|EJK65488.1|8.908e-7159.47hypothetical protein THAOC_13645 [Thalassiosira oc... [more]
gi|224011066|ref|XP_002294490.1|2.456e-6969.08predicted protein, partial [Thalassiosira pseudona... [more]
gi|1210520996|dbj|GAX20229.1|6.595e-6865.61hypothetical protein FisN_12Hh078 [Fistulifera sol... [more]
gi|1210526299|dbj|GAX15217.1|1.136e-6765.61hypothetical protein FisN_12Lh078 [Fistulifera sol... [more]
gi|1072230645|gb|OEU15378.1|7.263e-6563.69hypothetical protein FRACYDRAFT_269337 [Fragilario... [more]
gi|219121668|ref|XP_002181184.1|1.352e-6167.38predicted protein, partial [Phaeodactylum tricornu... [more]
gi|168001409|ref|XP_001753407.1|4.199e-4448.34predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1026768210|gb|OAE28412.1|1.101e-4338.36hypothetical protein AXG93_115s1010 [Marchantia po... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6032rna6032Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications