EWM24669.1, cds6009 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|585106191|gb|EWM24669.1| (CCT domain protein [Nannochloropsis gaditana]) HSP 1 Score: 987.252 bits (2551), Expect = 0.000e+0 Identity = 487/487 (100.00%), Postives = 487/487 (100.00%), Query Frame = 0
Query: 1 MSTLSIHSAPSLGMEKLWDNYAPAERGEGAGCEEAGGSATFMVEDGGIISYAGIFLDDKEDSDDETSDSSTDAEVVMAHLHAAFGGVGAPQANSIFNTSSGSGSTSTSGSTASIAPGSDGKGEEWKNAVLESLEDFLQTEGGIPAAGAGANRRFSFDLSNLDMQTLEQLAAGTTSGSSSRRGSFSLTLLEAEGFMTKSPPASSMAPLLSSGARFHSVPDNLPAGFSHTQEGCKEHVVCDCKKTLTTALGEDGAGHSVPNASVSASKNTGTGASCALEPLTKPQVKKGFAAASTPTGESSPDAPAASVSAASLLPTPQTPPKMPDPGDGPDNKTGANSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIVGGAVAAAEAAAAGGSANGSSSALMNEQTLDELFRRGLLITLEDRFGTEESFEWKERK 487
MSTLSIHSAPSLGMEKLWDNYAPAERGEGAGCEEAGGSATFMVEDGGIISYAGIFLDDKEDSDDETSDSSTDAEVVMAHLHAAFGGVGAPQANSIFNTSSGSGSTSTSGSTASIAPGSDGKGEEWKNAVLESLEDFLQTEGGIPAAGAGANRRFSFDLSNLDMQTLEQLAAGTTSGSSSRRGSFSLTLLEAEGFMTKSPPASSMAPLLSSGARFHSVPDNLPAGFSHTQEGCKEHVVCDCKKTLTTALGEDGAGHSVPNASVSASKNTGTGASCALEPLTKPQVKKGFAAASTPTGESSPDAPAASVSAASLLPTPQTPPKMPDPGDGPDNKTGANSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIVGGAVAAAEAAAAGGSANGSSSALMNEQTLDELFRRGLLITLEDRFGTEESFEWKERK
Sbjct: 1 MSTLSIHSAPSLGMEKLWDNYAPAERGEGAGCEEAGGSATFMVEDGGIISYAGIFLDDKEDSDDETSDSSTDAEVVMAHLHAAFGGVGAPQANSIFNTSSGSGSTSTSGSTASIAPGSDGKGEEWKNAVLESLEDFLQTEGGIPAAGAGANRRFSFDLSNLDMQTLEQLAAGTTSGSSSRRGSFSLTLLEAEGFMTKSPPASSMAPLLSSGARFHSVPDNLPAGFSHTQEGCKEHVVCDCKKTLTTALGEDGAGHSVPNASVSASKNTGTGASCALEPLTKPQVKKGFAAASTPTGESSPDAPAASVSAASLLPTPQTPPKMPDPGDGPDNKTGANSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIVGGAVAAAEAAAAGGSANGSSSALMNEQTLDELFRRGLLITLEDRFGTEESFEWKERK 487
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|219127529|ref|XP_002183986.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404709|gb|EEC44655.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 102.064 bits (253), Expect = 1.828e-19 Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 0
Query: 336 NSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEID 427
N +GT + T+ T G L ++ KDG RIGIY + R+ R+ARF AKR +RIWRK+IKYDCRKKLAD+RPR+KGRFV+R + D
Sbjct: 434 NYAGTTMQNPASTTVTTPGGSATFSLELLNKDG--RIGIYLPDARRARIARFHAKRIKRIWRKRIKYDCRKKLADSRPRIKGRFVKRSDMDD 523
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|1210529510|dbj|GAX11852.1| (hypothetical protein FisN_20Lh091 [Fistulifera solaris]) HSP 1 Score: 102.064 bits (253), Expect = 2.206e-19 Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 0
Query: 354 GNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRR 422
G+ L L ++ KDG RIGIY + R+ R+ARF AKR +RIWRK+IKYDCRKKLAD+RPR+KGRFV+R
Sbjct: 506 GSSTTLCLELVNKDG--RIGIYLPDARRARIARFHAKRAKRIWRKRIKYDCRKKLADSRPRIKGRFVKR 572
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|1072231080|gb|OEU15813.1| (hypothetical protein FRACYDRAFT_261853 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 102.064 bits (253), Expect = 2.526e-19 Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 0
Query: 366 KDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDE 424
KDG RIGIY E R+LR+ARF AKR RIWRK+IKYDCRKKLAD+RPR+KGRFV+R +
Sbjct: 646 KDG--RIGIYLPEARRLRIARFHAKRKMRIWRKRIKYDCRKKLADSRPRIKGRFVKRSD 702
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|1210517250|dbj|GAX23885.1| (hypothetical protein FisN_20Hh091 [Fistulifera solaris]) HSP 1 Score: 101.293 bits (251), Expect = 4.051e-19 Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 0
Query: 354 GNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRR 422
G+ L L ++ KDG RIGIY + R+ R+ARF AKR +RIWRK+IKYDCRKKLAD+RPR+KGRFV+R
Sbjct: 506 GSSTTLSLELVNKDG--RIGIYLPDARRARIARFHAKRAKRIWRKRIKYDCRKKLADSRPRIKGRFVKR 572
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|698781099|ref|XP_009823593.1| (hypothetical protein H257_01868 [Aphanomyces astaci] >gi|574121317|gb|ETV86794.1| hypothetical protein H257_01868 [Aphanomyces astaci]) HSP 1 Score: 98.2117 bits (243), Expect = 1.803e-18 Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 0
Query: 329 PDNKTGANSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEI 426
P K+ + +S + +D + +G P+G L P++ + IG YT RKLR+ +F KR +RIW+K IKYDCRKKLAD+RPR+KGRFVR E +
Sbjct: 209 PPTKSLSTTSPSKPSDKVIANGAPDGKFKKLFEPIVHQR---TIGAYTPTARKLRLEKFHEKRKKRIWKKSIKYDCRKKLADDRPRIKGRFVRVLENL 303
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|224001812|ref|XP_002290578.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974000|gb|EED92330.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 98.5969 bits (244), Expect = 4.422e-18 Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 0
Query: 371 RIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRR 422
R+GIY EERK R+A+F +KR RIWRK+IKYDCRKKLAD+RPRVKGRFV+R
Sbjct: 815 RVGIYLPEERKARIAKFHSKRKTRIWRKRIKYDCRKKLADSRPRVKGRFVKR 866
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|669163234|ref|XP_008617179.1| (hypothetical protein SDRG_12875 [Saprolegnia diclina VS20] >gi|530731170|gb|EQC29412.1| hypothetical protein SDRG_12875 [Saprolegnia diclina VS20]) HSP 1 Score: 90.1225 bits (222), Expect = 5.276e-16 Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0
Query: 372 IGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDII 429
IG YT RKLR+ +F KR +RIW+K IKYDCRKKLAD+RPR+KGRFVR E ++++
Sbjct: 230 IGAYTPAARKLRLEKFHEKRKKRIWKKSIKYDCRKKLADDRPRIKGRFVRVLENLNLV 287
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|813111113|ref|XP_012195103.1| (hypothetical protein SPRG_01503 [Saprolegnia parasitica CBS 223.65] >gi|641540585|gb|KDO34367.1| hypothetical protein SPRG_01503 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 90.1225 bits (222), Expect = 5.426e-16 Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0
Query: 372 IGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDII 429
IG YT RKLR+ +F KR +RIW+K IKYDCRKKLAD+RPR+KGRFVR E ++++
Sbjct: 230 IGAYTPAARKLRLEKFHEKRKKRIWKKSIKYDCRKKLADDRPRIKGRFVRVLENLNLV 287
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|1173928500|gb|OQR82074.1| (hypothetical protein THRCLA_11154 [Thraustotheca clavata]) HSP 1 Score: 90.1225 bits (222), Expect = 5.676e-16 Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0
Query: 372 IGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDII 429
IG YT RKLR+ +F KR +RIW+K IKYDCRKKLAD+RPR+KGRFVR E ++++
Sbjct: 240 IGAYTPAARKLRLEKFHEKRKKRIWKKSIKYDCRKKLADDRPRIKGRFVRVLENLNLV 297 The following BLAST results are available for this feature:
BLAST of EWM24669.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|