EWM24669.1, cds6009 (CDS) Nannochloropsis gaditana

Overview
NameEWM24669.1
Unique Namecds6009
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:394896..395268 -
Alignment locationCM002467.1:393706..394690 -
Alignment locationCM002467.1:393497..393602 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24669.1
ProductCCT domain protein
Orig transcript idgnl|cribi|Naga_100055g29.7353.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:394896..395268 -
CM002467.1supercontigCM002467.1:393706..394690 -
CM002467.1supercontigCM002467.1:393497..393602 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
Homology
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|585106191|gb|EWM24669.1| (CCT domain protein [Nannochloropsis gaditana])

HSP 1 Score: 987.252 bits (2551), Expect = 0.000e+0
Identity = 487/487 (100.00%), Postives = 487/487 (100.00%), Query Frame = 0
Query:    1 MSTLSIHSAPSLGMEKLWDNYAPAERGEGAGCEEAGGSATFMVEDGGIISYAGIFLDDKEDSDDETSDSSTDAEVVMAHLHAAFGGVGAPQANSIFNTSSGSGSTSTSGSTASIAPGSDGKGEEWKNAVLESLEDFLQTEGGIPAAGAGANRRFSFDLSNLDMQTLEQLAAGTTSGSSSRRGSFSLTLLEAEGFMTKSPPASSMAPLLSSGARFHSVPDNLPAGFSHTQEGCKEHVVCDCKKTLTTALGEDGAGHSVPNASVSASKNTGTGASCALEPLTKPQVKKGFAAASTPTGESSPDAPAASVSAASLLPTPQTPPKMPDPGDGPDNKTGANSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIVGGAVAAAEAAAAGGSANGSSSALMNEQTLDELFRRGLLITLEDRFGTEESFEWKERK 487
            MSTLSIHSAPSLGMEKLWDNYAPAERGEGAGCEEAGGSATFMVEDGGIISYAGIFLDDKEDSDDETSDSSTDAEVVMAHLHAAFGGVGAPQANSIFNTSSGSGSTSTSGSTASIAPGSDGKGEEWKNAVLESLEDFLQTEGGIPAAGAGANRRFSFDLSNLDMQTLEQLAAGTTSGSSSRRGSFSLTLLEAEGFMTKSPPASSMAPLLSSGARFHSVPDNLPAGFSHTQEGCKEHVVCDCKKTLTTALGEDGAGHSVPNASVSASKNTGTGASCALEPLTKPQVKKGFAAASTPTGESSPDAPAASVSAASLLPTPQTPPKMPDPGDGPDNKTGANSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIVGGAVAAAEAAAAGGSANGSSSALMNEQTLDELFRRGLLITLEDRFGTEESFEWKERK
Sbjct:    1 MSTLSIHSAPSLGMEKLWDNYAPAERGEGAGCEEAGGSATFMVEDGGIISYAGIFLDDKEDSDDETSDSSTDAEVVMAHLHAAFGGVGAPQANSIFNTSSGSGSTSTSGSTASIAPGSDGKGEEWKNAVLESLEDFLQTEGGIPAAGAGANRRFSFDLSNLDMQTLEQLAAGTTSGSSSRRGSFSLTLLEAEGFMTKSPPASSMAPLLSSGARFHSVPDNLPAGFSHTQEGCKEHVVCDCKKTLTTALGEDGAGHSVPNASVSASKNTGTGASCALEPLTKPQVKKGFAAASTPTGESSPDAPAASVSAASLLPTPQTPPKMPDPGDGPDNKTGANSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIVGGAVAAAEAAAAGGSANGSSSALMNEQTLDELFRRGLLITLEDRFGTEESFEWKERK 487          
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|219127529|ref|XP_002183986.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404709|gb|EEC44655.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-19
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 0
Query:  336 NSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEID 427
            N +GT   +   T+ T  G      L ++ KDG  RIGIY  + R+ R+ARF AKR +RIWRK+IKYDCRKKLAD+RPR+KGRFV+R +  D
Sbjct:  434 NYAGTTMQNPASTTVTTPGGSATFSLELLNKDG--RIGIYLPDARRARIARFHAKRIKRIWRKRIKYDCRKKLADSRPRIKGRFVKRSDMDD 523          
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|1210529510|dbj|GAX11852.1| (hypothetical protein FisN_20Lh091 [Fistulifera solaris])

HSP 1 Score: 102.064 bits (253), Expect = 2.206e-19
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 0
Query:  354 GNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRR 422
            G+   L L ++ KDG  RIGIY  + R+ R+ARF AKR +RIWRK+IKYDCRKKLAD+RPR+KGRFV+R
Sbjct:  506 GSSTTLCLELVNKDG--RIGIYLPDARRARIARFHAKRAKRIWRKRIKYDCRKKLADSRPRIKGRFVKR 572          
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|1072231080|gb|OEU15813.1| (hypothetical protein FRACYDRAFT_261853 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 102.064 bits (253), Expect = 2.526e-19
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 0
Query:  366 KDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDE 424
            KDG  RIGIY  E R+LR+ARF AKR  RIWRK+IKYDCRKKLAD+RPR+KGRFV+R +
Sbjct:  646 KDG--RIGIYLPEARRLRIARFHAKRKMRIWRKRIKYDCRKKLADSRPRIKGRFVKRSD 702          
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|1210517250|dbj|GAX23885.1| (hypothetical protein FisN_20Hh091 [Fistulifera solaris])

HSP 1 Score: 101.293 bits (251), Expect = 4.051e-19
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 0
Query:  354 GNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRR 422
            G+   L L ++ KDG  RIGIY  + R+ R+ARF AKR +RIWRK+IKYDCRKKLAD+RPR+KGRFV+R
Sbjct:  506 GSSTTLSLELVNKDG--RIGIYLPDARRARIARFHAKRAKRIWRKRIKYDCRKKLADSRPRIKGRFVKR 572          
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|698781099|ref|XP_009823593.1| (hypothetical protein H257_01868 [Aphanomyces astaci] >gi|574121317|gb|ETV86794.1| hypothetical protein H257_01868 [Aphanomyces astaci])

HSP 1 Score: 98.2117 bits (243), Expect = 1.803e-18
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 0
Query:  329 PDNKTGANSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEI 426
            P  K+ + +S +  +D +  +G P+G    L  P++ +     IG YT   RKLR+ +F  KR +RIW+K IKYDCRKKLAD+RPR+KGRFVR  E +
Sbjct:  209 PPTKSLSTTSPSKPSDKVIANGAPDGKFKKLFEPIVHQR---TIGAYTPTARKLRLEKFHEKRKKRIWKKSIKYDCRKKLADDRPRIKGRFVRVLENL 303          
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|224001812|ref|XP_002290578.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974000|gb|EED92330.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 98.5969 bits (244), Expect = 4.422e-18
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 0
Query:  371 RIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRR 422
            R+GIY  EERK R+A+F +KR  RIWRK+IKYDCRKKLAD+RPRVKGRFV+R
Sbjct:  815 RVGIYLPEERKARIAKFHSKRKTRIWRKRIKYDCRKKLADSRPRVKGRFVKR 866          
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|669163234|ref|XP_008617179.1| (hypothetical protein SDRG_12875 [Saprolegnia diclina VS20] >gi|530731170|gb|EQC29412.1| hypothetical protein SDRG_12875 [Saprolegnia diclina VS20])

HSP 1 Score: 90.1225 bits (222), Expect = 5.276e-16
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0
Query:  372 IGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDII 429
            IG YT   RKLR+ +F  KR +RIW+K IKYDCRKKLAD+RPR+KGRFVR  E ++++
Sbjct:  230 IGAYTPAARKLRLEKFHEKRKKRIWKKSIKYDCRKKLADDRPRIKGRFVRVLENLNLV 287          
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|813111113|ref|XP_012195103.1| (hypothetical protein SPRG_01503 [Saprolegnia parasitica CBS 223.65] >gi|641540585|gb|KDO34367.1| hypothetical protein SPRG_01503 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 90.1225 bits (222), Expect = 5.426e-16
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0
Query:  372 IGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDII 429
            IG YT   RKLR+ +F  KR +RIW+K IKYDCRKKLAD+RPR+KGRFVR  E ++++
Sbjct:  230 IGAYTPAARKLRLEKFHEKRKKRIWKKSIKYDCRKKLADDRPRIKGRFVRVLENLNLV 287          
BLAST of EWM24669.1 vs. NCBI_GenBank
Match: gi|1173928500|gb|OQR82074.1| (hypothetical protein THRCLA_11154 [Thraustotheca clavata])

HSP 1 Score: 90.1225 bits (222), Expect = 5.676e-16
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0
Query:  372 IGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDII 429
            IG YT   RKLR+ +F  KR +RIW+K IKYDCRKKLAD+RPR+KGRFVR  E ++++
Sbjct:  240 IGAYTPAARKLRLEKFHEKRKKRIWKKSIKYDCRKKLADDRPRIKGRFVRVLENLNLV 297          
The following BLAST results are available for this feature:
BLAST of EWM24669.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106191|gb|EWM24669.1|0.000e+0100.00CCT domain protein [Nannochloropsis gaditana][more]
gi|219127529|ref|XP_002183986.1|1.828e-1953.26predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210529510|dbj|GAX11852.1|2.206e-1963.77hypothetical protein FisN_20Lh091 [Fistulifera sol... [more]
gi|1072231080|gb|OEU15813.1|2.526e-1972.88hypothetical protein FRACYDRAFT_261853 [Fragilario... [more]
gi|1210517250|dbj|GAX23885.1|4.051e-1963.77hypothetical protein FisN_20Hh091 [Fistulifera sol... [more]
gi|698781099|ref|XP_009823593.1|1.803e-1845.92hypothetical protein H257_01868 [Aphanomyces astac... [more]
gi|224001812|ref|XP_002290578.1|4.422e-1875.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|669163234|ref|XP_008617179.1|5.276e-1662.07hypothetical protein SDRG_12875 [Saprolegnia dicli... [more]
gi|813111113|ref|XP_012195103.1|5.426e-1662.07hypothetical protein SPRG_01503 [Saprolegnia paras... [more]
gi|1173928500|gb|OQR82074.1|5.676e-1662.07hypothetical protein THRCLA_11154 [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6024rna6024Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications