EWM24674.1, cds5989 (CDS) Nannochloropsis gaditana

Overview
NameEWM24674.1
Unique Namecds5989
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:333968..334493 +
Alignment locationCM002467.1:335763..335887 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24674.1
Productrnp-1 like rna-binding protein
Orig transcript idgnl|cribi|Naga_100123g15.6331.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:333968..334493 +
CM002467.1supercontigCM002467.1:335763..335887 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
GO:0004842ubiquitin-protein transferase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|585106198|gb|EWM24674.1| (rnp-1 like rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 446.047 bits (1146), Expect = 1.291e-158
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:    1 MNEDTSGTGEAYDPFAQPYLPALPPAHDAPDSQAPPEAPVSLDPTRGDSSSPPRASGVSGATMDHKGKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGGADEGGVGREDRAEGGVRGANGDSHHKQLPCSLRMDQINDFATAPALHFNVMRAGWAPSNVNR 216
            MNEDTSGTGEAYDPFAQPYLPALPPAHDAPDSQAPPEAPVSLDPTRGDSSSPPRASGVSGATMDHKGKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGGADEGGVGREDRAEGGVRGANGDSHHKQLPCSLRMDQINDFATAPALHFNVMRAGWAPSNVNR
Sbjct:    1 MNEDTSGTGEAYDPFAQPYLPALPPAHDAPDSQAPPEAPVSLDPTRGDSSSPPRASGVSGATMDHKGKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGGADEGGVGREDRAEGGVRGANGDSHHKQLPCSLRMDQINDFATAPALHFNVMRAGWAPSNVNR 216          
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|931396690|gb|KPJ85756.1| (RNA-binding protein [Parcubacteria bacterium SG8_24])

HSP 1 Score: 87.4261 bits (215), Expect = 4.413e-19
Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 0
Query:   67 GKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPR 147
            GK+LYVG LSFDT +  +RD FS+ GS+    I+TD+ T +S+GF FV ++T   AQKA++M+D ++L+GR LK+  A P+
Sbjct:    2 GKKLYVGNLSFDTNEEGLRDYFSQAGSVESAVIITDRMTGRSKGFGFVEYATDEEAQKAIEMFDGQDLDGRNLKVNEARPK 82          
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|1088098996|gb|OGZ63494.1| (RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_37_17] >gi|1088107698|gb|OGZ71664.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFCSPLOWO2_01_FULL_37_19] >gi|1088112473|gb|OGZ76187.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYA1_FULL_37_15] >gi|1088113416|gb|OGZ77053.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYA12_FULL_37_10] >gi|1088116749|gb|OGZ80156.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_38_37] >gi|1088118462|gb|OGZ81794.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYC1_FULL_37_43] >gi|1088119731|gb|OGZ83015.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYB2_FULL_37_10] >gi|1088122676|gb|OGZ85768.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYC12_FULL_39_20] >gi|1088123596|gb|OGZ86694.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYC2_FULL_37_17] >gi|1088127235|gb|OGZ90113.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYD1_FULL_37_73] >gi|1088128427|gb|OGZ91274.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYD12_FULL_37_10] >gi|1088129085|gb|OGZ91898.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYD2_FULL_37_10])

HSP 1 Score: 85.8853 bits (211), Expect = 2.155e-18
Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 0
Query:   68 KRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGG 154
            K+LYVG LS+DTT+  +++ F++ G++    I+ DK TN+S+GF FV  ST   AQKA++M+D +EL+GR +K+  A+P    G GG
Sbjct:    3 KKLYVGGLSYDTTEATLKETFAEAGTVESATIIIDKMTNRSKGFGFVEMSTDEEAQKAIEMFDGKELDGRTVKVNEAKPMEPRGNGG 89          
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|1084434671|gb|OGN01980.1| (RNA-binding protein [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_42_12] >gi|1084456336|gb|OGN22666.1| RNA-binding protein [Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_42_49])

HSP 1 Score: 84.7297 bits (208), Expect = 1.029e-17
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 0
Query:   68 KRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRA 148
            K+LYVG LS+DTT+  +RD FS+ G +    ++TDK + +SRGF FV  ST   AQKA+ MW+ +EL+GR L +  A+P A
Sbjct:    3 KKLYVGGLSYDTTEAGLRDAFSQAGEVVSAAVITDKMSGRSRGFGFVEMSTEEGAQKAIDMWNGKELDGRTLVVNEAKPMA 83          
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|938997727|ref|WP_054773994.1| (RNA-binding protein, partial [Methylogaea oryzae])

HSP 1 Score: 82.4185 bits (202), Expect = 6.872e-17
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 0
Query:   69 RLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKI 141
            RL+VG L F  T  E+ D+FS+ GS+  C ++ DK TN+SRGFAFV  + RA A+KA++M+ N++ NGR L +
Sbjct:    4 RLFVGNLPFTATSNELLDLFSQAGSVSACEVVMDKMTNRSRGFAFVEMTDRADAEKAIEMFHNKDFNGRSLTV 76          
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|1083924401|gb|OGJ42607.1| (RNA-binding protein [Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_01_FULL_39_12] >gi|1083924491|gb|OGJ42691.1| RNA-binding protein [Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_02_FULL_39_10])

HSP 1 Score: 82.4185 bits (202), Expect = 7.178e-17
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 0
Query:   68 KRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEP 146
            K+LYVG LS+DTT+  +   F+K G++   +I+TDK + +S+GF FV FST   AQ A+Q WD +EL+GR+L++  A P
Sbjct:    3 KKLYVGGLSYDTTEEGLNAAFAKSGTVESAKIITDKFSGRSKGFGFVEFSTDEEAQAAIQAWDGQELDGRKLRVNEARP 81          
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|1084431289|gb|OGM98765.1| (hypothetical protein A2649_04360 [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_26] >gi|1084455652|gb|OGN22002.1| hypothetical protein A2915_04780 [Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_41_34])

HSP 1 Score: 82.4185 bits (202), Expect = 1.020e-16
Identity = 35/80 (43.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query:   67 GKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEP 146
            GK+LYVG LS+DTTD  +++ FS+ G++    ++TDK + +SRGF FV  +T   AQKA++M + +E++GR++ +  A P
Sbjct:    2 GKKLYVGSLSYDTTDESLKEAFSQAGTVESANVITDKMSGRSRGFGFVEMATDEEAQKAIEMLNGQEVDGRKVTVNEARP 81          
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|754583004|ref|WP_041975111.1| (hypothetical protein [Pyrinomonas methylaliphatogenes] >gi|746991846|emb|CDM65061.1| RRM domain-containing RNA-binding protein [Pyrinomonas methylaliphatogenes])

HSP 1 Score: 81.6481 bits (200), Expect = 1.222e-16
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 0
Query:   69 RLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGGAD 156
            RLYVG L+F TT  ++R++FS+ G++    I+ D  T +SRGF FV  S+R   + A++M+D REL+GR LK+  A PR  E  GG D
Sbjct:    4 RLYVGNLAFQTTSEDLRELFSQAGTVETANIIEDYDTGRSRGFGFVEMSSREEGEIAIEMFDGRELSGRNLKVNEARPRV-ERSGGGD 90          
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|1084442476|gb|OGN09425.1| (RNA-binding protein [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_02_FULL_41_11])

HSP 1 Score: 81.6481 bits (200), Expect = 1.673e-16
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 0
Query:   68 KRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPR 147
            K+LYVG LS++TT+  ++D FS+ G +    ++TDK + +SRGF FV  +T   AQKA++MW+ +EL+GR L +  A+P+
Sbjct:    3 KKLYVGGLSYNTTEASLKDAFSQAGEVVSAAVITDKMSGRSRGFGFVEMATEEDAQKAIEMWNGKELDGRTLIVNEAKPK 82          
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|818862451|gb|KKU99225.1| (RNA recognition motif-containing protein [Candidatus Jorgensenbacteria bacterium GW2011_GWC1_48_8] >gi|818879635|gb|KKW15420.1| RNA recognition motif-containing protein [Candidatus Jorgensenbacteria bacterium GW2011_GWB1_50_10])

HSP 1 Score: 81.2629 bits (199), Expect = 1.792e-16
Identity = 33/80 (41.25%), Postives = 57/80 (71.25%), Query Frame = 0
Query:   67 GKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEP 146
             K+LYVG LS+DTTD+ ++D FSK G++    ++ D+ + +S+GF FV  +T   A+ A++MW+ +EL+GR++ +  A+P
Sbjct:    2 AKKLYVGSLSYDTTDQSLKDAFSKAGAVETATVIIDRMSGRSKGFGFVEMATDEEAKAAIEMWNGKELDGRKVVVNEAKP 81          
The following BLAST results are available for this feature:
BLAST of EWM24674.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106198|gb|EWM24674.1|1.291e-158100.00rnp-1 like rna-binding protein [Nannochloropsis ga... [more]
gi|931396690|gb|KPJ85756.1|4.413e-1949.38RNA-binding protein [Parcubacteria bacterium SG8_2... [more]
gi|1088098996|gb|OGZ63494.1|2.155e-1845.98RNA-binding protein [Candidatus Staskawiczbacteria... [more]
gi|1084434671|gb|OGN01980.1|1.029e-1749.38RNA-binding protein [Candidatus Yanofskybacteria b... [more]
gi|938997727|ref|WP_054773994.1|6.872e-1749.32RNA-binding protein, partial [Methylogaea oryzae][more]
gi|1083924401|gb|OGJ42607.1|7.178e-1748.10RNA-binding protein [Candidatus Peregrinibacteria ... [more]
gi|1084431289|gb|OGM98765.1|1.020e-1643.75hypothetical protein A2649_04360 [Candidatus Yanof... [more]
gi|754583004|ref|WP_041975111.1|1.222e-1646.59hypothetical protein [Pyrinomonas methylaliphatoge... [more]
gi|1084442476|gb|OGN09425.1|1.673e-1645.00RNA-binding protein [Candidatus Yanofskybacteria b... [more]
gi|818862451|gb|KKU99225.1|1.792e-1641.25RNA recognition motif-containing protein [Candidat... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6004rna6004Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications