EWM24674.1, cds5989 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|585106198|gb|EWM24674.1| (rnp-1 like rna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 446.047 bits (1146), Expect = 1.291e-158 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query: 1 MNEDTSGTGEAYDPFAQPYLPALPPAHDAPDSQAPPEAPVSLDPTRGDSSSPPRASGVSGATMDHKGKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGGADEGGVGREDRAEGGVRGANGDSHHKQLPCSLRMDQINDFATAPALHFNVMRAGWAPSNVNR 216
MNEDTSGTGEAYDPFAQPYLPALPPAHDAPDSQAPPEAPVSLDPTRGDSSSPPRASGVSGATMDHKGKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGGADEGGVGREDRAEGGVRGANGDSHHKQLPCSLRMDQINDFATAPALHFNVMRAGWAPSNVNR
Sbjct: 1 MNEDTSGTGEAYDPFAQPYLPALPPAHDAPDSQAPPEAPVSLDPTRGDSSSPPRASGVSGATMDHKGKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGGADEGGVGREDRAEGGVRGANGDSHHKQLPCSLRMDQINDFATAPALHFNVMRAGWAPSNVNR 216
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|931396690|gb|KPJ85756.1| (RNA-binding protein [Parcubacteria bacterium SG8_24]) HSP 1 Score: 87.4261 bits (215), Expect = 4.413e-19 Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 0
Query: 67 GKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPR 147
GK+LYVG LSFDT + +RD FS+ GS+ I+TD+ T +S+GF FV ++T AQKA++M+D ++L+GR LK+ A P+
Sbjct: 2 GKKLYVGNLSFDTNEEGLRDYFSQAGSVESAVIITDRMTGRSKGFGFVEYATDEEAQKAIEMFDGQDLDGRNLKVNEARPK 82
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|1088098996|gb|OGZ63494.1| (RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_37_17] >gi|1088107698|gb|OGZ71664.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFCSPLOWO2_01_FULL_37_19] >gi|1088112473|gb|OGZ76187.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYA1_FULL_37_15] >gi|1088113416|gb|OGZ77053.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYA12_FULL_37_10] >gi|1088116749|gb|OGZ80156.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_38_37] >gi|1088118462|gb|OGZ81794.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYC1_FULL_37_43] >gi|1088119731|gb|OGZ83015.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYB2_FULL_37_10] >gi|1088122676|gb|OGZ85768.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYC12_FULL_39_20] >gi|1088123596|gb|OGZ86694.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYC2_FULL_37_17] >gi|1088127235|gb|OGZ90113.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYD1_FULL_37_73] >gi|1088128427|gb|OGZ91274.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYD12_FULL_37_10] >gi|1088129085|gb|OGZ91898.1| RNA-binding protein [Candidatus Staskawiczbacteria bacterium RIFOXYD2_FULL_37_10]) HSP 1 Score: 85.8853 bits (211), Expect = 2.155e-18 Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 0
Query: 68 KRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGG 154
K+LYVG LS+DTT+ +++ F++ G++ I+ DK TN+S+GF FV ST AQKA++M+D +EL+GR +K+ A+P G GG
Sbjct: 3 KKLYVGGLSYDTTEATLKETFAEAGTVESATIIIDKMTNRSKGFGFVEMSTDEEAQKAIEMFDGKELDGRTVKVNEAKPMEPRGNGG 89
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|1084434671|gb|OGN01980.1| (RNA-binding protein [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_42_12] >gi|1084456336|gb|OGN22666.1| RNA-binding protein [Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_42_49]) HSP 1 Score: 84.7297 bits (208), Expect = 1.029e-17 Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 0
Query: 68 KRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRA 148
K+LYVG LS+DTT+ +RD FS+ G + ++TDK + +SRGF FV ST AQKA+ MW+ +EL+GR L + A+P A
Sbjct: 3 KKLYVGGLSYDTTEAGLRDAFSQAGEVVSAAVITDKMSGRSRGFGFVEMSTEEGAQKAIDMWNGKELDGRTLVVNEAKPMA 83
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|938997727|ref|WP_054773994.1| (RNA-binding protein, partial [Methylogaea oryzae]) HSP 1 Score: 82.4185 bits (202), Expect = 6.872e-17 Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 0
Query: 69 RLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKI 141
RL+VG L F T E+ D+FS+ GS+ C ++ DK TN+SRGFAFV + RA A+KA++M+ N++ NGR L +
Sbjct: 4 RLFVGNLPFTATSNELLDLFSQAGSVSACEVVMDKMTNRSRGFAFVEMTDRADAEKAIEMFHNKDFNGRSLTV 76
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|1083924401|gb|OGJ42607.1| (RNA-binding protein [Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_01_FULL_39_12] >gi|1083924491|gb|OGJ42691.1| RNA-binding protein [Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_02_FULL_39_10]) HSP 1 Score: 82.4185 bits (202), Expect = 7.178e-17 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 0
Query: 68 KRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEP 146
K+LYVG LS+DTT+ + F+K G++ +I+TDK + +S+GF FV FST AQ A+Q WD +EL+GR+L++ A P
Sbjct: 3 KKLYVGGLSYDTTEEGLNAAFAKSGTVESAKIITDKFSGRSKGFGFVEFSTDEEAQAAIQAWDGQELDGRKLRVNEARP 81
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|1084431289|gb|OGM98765.1| (hypothetical protein A2649_04360 [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_26] >gi|1084455652|gb|OGN22002.1| hypothetical protein A2915_04780 [Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_41_34]) HSP 1 Score: 82.4185 bits (202), Expect = 1.020e-16 Identity = 35/80 (43.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query: 67 GKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEP 146
GK+LYVG LS+DTTD +++ FS+ G++ ++TDK + +SRGF FV +T AQKA++M + +E++GR++ + A P
Sbjct: 2 GKKLYVGSLSYDTTDESLKEAFSQAGTVESANVITDKMSGRSRGFGFVEMATDEEAQKAIEMLNGQEVDGRKVTVNEARP 81
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|754583004|ref|WP_041975111.1| (hypothetical protein [Pyrinomonas methylaliphatogenes] >gi|746991846|emb|CDM65061.1| RRM domain-containing RNA-binding protein [Pyrinomonas methylaliphatogenes]) HSP 1 Score: 81.6481 bits (200), Expect = 1.222e-16 Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 0
Query: 69 RLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGGAD 156
RLYVG L+F TT ++R++FS+ G++ I+ D T +SRGF FV S+R + A++M+D REL+GR LK+ A PR E GG D
Sbjct: 4 RLYVGNLAFQTTSEDLRELFSQAGTVETANIIEDYDTGRSRGFGFVEMSSREEGEIAIEMFDGRELSGRNLKVNEARPRV-ERSGGGD 90
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|1084442476|gb|OGN09425.1| (RNA-binding protein [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_02_FULL_41_11]) HSP 1 Score: 81.6481 bits (200), Expect = 1.673e-16 Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 0
Query: 68 KRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPR 147
K+LYVG LS++TT+ ++D FS+ G + ++TDK + +SRGF FV +T AQKA++MW+ +EL+GR L + A+P+
Sbjct: 3 KKLYVGGLSYNTTEASLKDAFSQAGEVVSAAVITDKMSGRSRGFGFVEMATEEDAQKAIEMWNGKELDGRTLIVNEAKPK 82
BLAST of EWM24674.1 vs. NCBI_GenBank
Match: gi|818862451|gb|KKU99225.1| (RNA recognition motif-containing protein [Candidatus Jorgensenbacteria bacterium GW2011_GWC1_48_8] >gi|818879635|gb|KKW15420.1| RNA recognition motif-containing protein [Candidatus Jorgensenbacteria bacterium GW2011_GWB1_50_10]) HSP 1 Score: 81.2629 bits (199), Expect = 1.792e-16 Identity = 33/80 (41.25%), Postives = 57/80 (71.25%), Query Frame = 0
Query: 67 GKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEP 146
K+LYVG LS+DTTD+ ++D FSK G++ ++ D+ + +S+GF FV +T A+ A++MW+ +EL+GR++ + A+P
Sbjct: 2 AKKLYVGSLSYDTTDQSLKDAFSKAGAVETATVIIDRMSGRSKGFGFVEMATDEEAKAAIEMWNGKELDGRKVVVNEAKP 81 The following BLAST results are available for this feature:
BLAST of EWM24674.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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