EWM24727.1, cds5954 (CDS) Nannochloropsis gaditana

Overview
NameEWM24727.1
Unique Namecds5954
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:242355..242628 +
Alignment locationCM002467.1:242887..243061 +
Alignment locationCM002467.1:243288..243741 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24727.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100180g10.4040.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:242355..242628 +
CM002467.1supercontigCM002467.1:242887..243061 +
CM002467.1supercontigCM002467.1:243288..243741 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|585106262|gb|EWM24727.1| (hypothetical protein Naga_100180g10 [Nannochloropsis gaditana])

HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MPQRGTPPPVVLRRPIIGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRATSQPPLFASSSSYSSSSSPNAGAAAGEKSNGTAMSGEEGEREGGVEKGRLGEEESTGHLLVKATAEGQPGKREEEGGERQEEKGGKDGRGEVRRREEPVS 300
            MPQRGTPPPVVLRRPIIGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRATSQPPLFASSSSYSSSSSPNAGAAAGEKSNGTAMSGEEGEREGGVEKGRLGEEESTGHLLVKATAEGQPGKREEEGGERQEEKGGKDGRGEVRRREEPVS
Sbjct:    1 MPQRGTPPPVVLRRPIIGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRATSQPPLFASSSSYSSSSSPNAGAAAGEKSNGTAMSGEEGEREGGVEKGRLGEEESTGHLLVKATAEGQPGKREEEGGERQEEKGGKDGRGEVRRREEPVS 300          
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|931428707|gb|KPK14551.1| (hypothetical protein AMJ62_13050 [Myxococcales bacterium SG8_38])

HSP 1 Score: 150.984 bits (380), Expect = 1.846e-41
Identity = 85/182 (46.70%), Postives = 112/182 (61.54%), Query Frame = 0
Query:   12 LRRPIIGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEAL 193
            +R PI+GVMGSG          LG WLA    +LLTGGG GVM  VSR F ET  R G ++G++PA      E     P GYPNP+ EI IRT   LS     GT++ SRNHIN+LS D+++A+ GS GT SE++LA+RYRKP++ +L +  D   L     E ++V +S  EV+ +V EAL
Sbjct:    1 MRLPIVGVMGSGAYSDRERCVALGRWLAGERVHLLTGGGGGVMSAVSRAFFETRNRAGLVLGILPASSAGGGE----APEGYPNPWVEIPIRTHLHLSGS--QGTDVASRNHINVLSCDVLIAMAGSWGTRSEVELALRYRKPIVAYLQQRSDIPRLP----ESVRVVESFEEVKAFVREAL 172          
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|503958968|ref|WP_014192962.1| (DNA-binding protein [Burkholderia sp. YI23] >gi|357938763|gb|AET92320.1| Rossmann fold nucleotide-binding protein-like protein [Burkholderia sp. YI23])

HSP 1 Score: 148.288 bits (373), Expect = 2.183e-40
Identity = 84/179 (46.93%), Postives = 109/179 (60.89%), Query Frame = 0
Query:   17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALER 195
            I VMGSG+ P   LS PLG W+A +G NLLTGGG+GVM  VSR F+   GR G+ IG++P  P        +P  GYPNPY +I I T  P    P       +RNH+N+LS D +VALPG  GT  EI++A+R+RKPLILF   D  +      GVED  +A ++ EV+ ++ E L R
Sbjct:    6 IAVMGSGKLPWPELSVPLGKWIAESGHNLLTGGGQGVMSEVSRAFTSVEGRAGRSIGIVPTRPDPLA--GFVPLDGYPNPYIDIAIVTPLP-RREPGQDEGAINRNHVNVLSGDAIVALPGGPGTAQEIEIAMRWRKPLILFGPRDVHEY-----GVEDAPLATTLAEVQSFLREVLTR 176          
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|654297775|ref|WP_027812105.1| (DNA-binding protein [Burkholderia cenocepacia])

HSP 1 Score: 148.673 bits (374), Expect = 2.497e-40
Identity = 83/184 (45.11%), Postives = 113/184 (61.41%), Query Frame = 0
Query:   17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRA 200
            IGVMGSG+EP +  S PLG+WLA  G NLLTGGG+GVM  V+R F+  PGR G+ IG++P    A      +P  GYP+P+ +I + T  P    P    +  +RN++N+LSSD++VALPG  GT  EI LA R+RKPL+ F G DG    LA D V       S+ +V  +V++A    + +A
Sbjct:   24 IGVMGSGKEPWLAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRAGRSIGILPT--QADPVAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGPGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFVDDAFAAEQAQA 199          
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|1147401426|ref|WP_077209721.1| (DNA-binding protein [Burkholderia cenocepacia] >gi|1144118865|gb|ONR76798.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144180303|gb|ONS36864.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144185227|gb|ONS41672.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144187547|gb|ONS43947.1| DNA-binding protein [Burkholderia cenocepacia])

HSP 1 Score: 148.288 bits (373), Expect = 3.483e-40
Identity = 83/181 (45.86%), Postives = 109/181 (60.22%), Query Frame = 0
Query:   17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRR 197
            IGVMGSG+EP    S PLG+WLA  G NLLTGGG+GVM  V+R F+  PGR G+ IG++P    A      +P  GYP+P+ +I + T  P    P    +  +RN++N+LSSD++VALPG  GT  EI LA R+RKPL+ F G DG    LA D V       S+ +V  +V +A    R
Sbjct:   24 IGVMGSGKEPWAAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRTGRSIGIVPT--QADPAAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGHGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFVGDAFAAER 196          
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|654293418|ref|WP_027808147.1| (DNA-binding protein [Burkholderia cenocepacia])

HSP 1 Score: 147.902 bits (372), Expect = 4.180e-40
Identity = 82/184 (44.57%), Postives = 113/184 (61.41%), Query Frame = 0
Query:   17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRA 200
            IGVMGSG+EP +  S PLG+WLA  G NLLTGGG+GVM  V+R F+  PGR G+ IG++P    A      +P  GYP+P+ +I + T  P    P    +  +RN++N+LSSD++VALPG  GT  EI LA R+RKPL+ F G DG    LA D V       S+ +V  ++++A    + +A
Sbjct:   24 IGVMGSGKEPWLAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRAGRSIGILPT--QADPVAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGPGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFIDDAFAAEQAQA 199          
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|974655594|ref|WP_059241214.1| (hypothetical protein [Burkholderia cepacia] >gi|973225064|gb|ALX16592.1| DNA-binding protein [Burkholderia cepacia JBK9])

HSP 1 Score: 147.902 bits (372), Expect = 4.317e-40
Identity = 83/184 (45.11%), Postives = 111/184 (60.33%), Query Frame = 0
Query:   17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRA 200
            IGVMGSG+EP +  + PLG+WLA  G NLLTGGG+GVM  V+R F+  PGR G+ IG++P    A      +P  GYP+P+ +I I T  P    P       +RN++N+LSSD++VALPG  GT  EI LA R+RKPL+ F G DG    LA     D     S+ +V  +V++AL     R+
Sbjct:   24 IGVMGSGKEPWLAFAEPLGAWLAQAGFNLLTGGGQGVMLAVARAFANVPGRAGRSIGIVPT--QADPLAGFVPLDGYPHPFVDIPILTPLP-RREPGADPHTINRNYVNVLSSDLIVALPGGHGTAQEISLAQRWRKPLVCF-GPDGAFESLA----PDAACTSSLDDVIRFVDDALAMAHARS 199          
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|1147227408|ref|WP_077190554.1| (DNA-binding protein [Burkholderia cenocepacia] >gi|1144476148|gb|ONV27142.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144480825|gb|ONV31758.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144485457|gb|ONV36340.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144497165|gb|ONV47932.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144502851|gb|ONV53554.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144511529|gb|ONV62138.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144513554|gb|ONV64130.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144519421|gb|ONV69932.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144522163|gb|ONV72642.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144540385|gb|ONV90584.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144541380|gb|ONV91562.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144547946|gb|ONV98036.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144551377|gb|ONW01420.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144568528|gb|ONW18300.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1147493047|gb|AQQ40816.1| DNA-binding protein [Burkholderia cenocepacia])

HSP 1 Score: 147.902 bits (372), Expect = 4.654e-40
Identity = 84/184 (45.65%), Postives = 111/184 (60.33%), Query Frame = 0
Query:   17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRA 200
            IGVMGSG+EP    S PLG+WLA  G NLLTGGG+GVM  V+R F+  PGR G+ IG++P    A      +P  GYP+P+ +I + T  P    P    +  +RN++N+LSSD++VALPG  GT  EI LA R+RKPL+ F G DG    LA D V       S+ +V  +V +A    R +A
Sbjct:   24 IGVMGSGKEPWAAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRTGRSIGIVPT--QADPVAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGHGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFVGDAFAAEREQA 199          
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|654271203|ref|WP_027786357.1| (DNA-binding protein [Burkholderia cepacia])

HSP 1 Score: 147.902 bits (372), Expect = 4.654e-40
Identity = 83/184 (45.11%), Postives = 112/184 (60.87%), Query Frame = 0
Query:   17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRA 200
            IGVMGSG+EP +  S PLG+WLA  G NLLTGGG+GVM  V+R F+  PGR G+ IG++P    A      +P  GYP+P+ +I + T  P    P    +  +RN++N+LSSD++VALPG  GT  EI LA R+RKPL+ F G DG    LA D V       S+ +V  +V +A    + +A
Sbjct:   24 IGVMGSGKEPWLAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRAGRSIGILPT--QADPVAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGHGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFVADAFSAEQAQA 199          
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|685655872|gb|AIO43001.1| (putative lysine decarboxylase family protein [Burkholderia cepacia] >gi|686825240|gb|KGC04719.1| putative lysine decarboxylase family protein [Burkholderia cepacia])

HSP 1 Score: 147.132 bits (370), Expect = 5.602e-40
Identity = 83/181 (45.86%), Postives = 109/181 (60.22%), Query Frame = 0
Query:   17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRR 197
            IGVMGSG+EP    S PLG+WLA  G NLLTGGG+GVM  V+R F+  PGR G+ IG++P    A      +P  GYP+P+ +I + T  P    P    +  +RN++N+LSSD++VALPG  GT  EI LA R+RKPL+ F G DG    LA D V       S+ +V  +V +A    R
Sbjct:    8 IGVMGSGKEPWAAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRAGRSIGIVPT--QADPVAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGHGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFVGDAFAAER 180          
The following BLAST results are available for this feature:
BLAST of EWM24727.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106262|gb|EWM24727.1|0.000e+0100.00hypothetical protein Naga_100180g10 [Nannochlorops... [more]
gi|931428707|gb|KPK14551.1|1.846e-4146.70hypothetical protein AMJ62_13050 [Myxococcales bac... [more]
gi|503958968|ref|WP_014192962.1|2.183e-4046.93DNA-binding protein [Burkholderia sp. YI23] >gi|35... [more]
gi|654297775|ref|WP_027812105.1|2.497e-4045.11DNA-binding protein [Burkholderia cenocepacia][more]
gi|1147401426|ref|WP_077209721.1|3.483e-4045.86DNA-binding protein [Burkholderia cenocepacia] >gi... [more]
gi|654293418|ref|WP_027808147.1|4.180e-4044.57DNA-binding protein [Burkholderia cenocepacia][more]
gi|974655594|ref|WP_059241214.1|4.317e-4045.11hypothetical protein [Burkholderia cepacia] >gi|97... [more]
gi|1147227408|ref|WP_077190554.1|4.654e-4045.65DNA-binding protein [Burkholderia cenocepacia] >gi... [more]
gi|654271203|ref|WP_027786357.1|4.654e-4045.11DNA-binding protein [Burkholderia cepacia][more]
gi|685655872|gb|AIO43001.1|5.602e-4045.86putative lysine decarboxylase family protein [Burk... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5969rna5969Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications