EWM24727.1, cds5954 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|585106262|gb|EWM24727.1| (hypothetical protein Naga_100180g10 [Nannochloropsis gaditana]) HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0 Query: 1 MPQRGTPPPVVLRRPIIGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRATSQPPLFASSSSYSSSSSPNAGAAAGEKSNGTAMSGEEGEREGGVEKGRLGEEESTGHLLVKATAEGQPGKREEEGGERQEEKGGKDGRGEVRRREEPVS 300 MPQRGTPPPVVLRRPIIGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRATSQPPLFASSSSYSSSSSPNAGAAAGEKSNGTAMSGEEGEREGGVEKGRLGEEESTGHLLVKATAEGQPGKREEEGGERQEEKGGKDGRGEVRRREEPVS Sbjct: 1 MPQRGTPPPVVLRRPIIGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRATSQPPLFASSSSYSSSSSPNAGAAAGEKSNGTAMSGEEGEREGGVEKGRLGEEESTGHLLVKATAEGQPGKREEEGGERQEEKGGKDGRGEVRRREEPVS 300
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|931428707|gb|KPK14551.1| (hypothetical protein AMJ62_13050 [Myxococcales bacterium SG8_38]) HSP 1 Score: 150.984 bits (380), Expect = 1.846e-41 Identity = 85/182 (46.70%), Postives = 112/182 (61.54%), Query Frame = 0 Query: 12 LRRPIIGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEAL 193 +R PI+GVMGSG LG WLA +LLTGGG GVM VSR F ET R G ++G++PA E P GYPNP+ EI IRT LS GT++ SRNHIN+LS D+++A+ GS GT SE++LA+RYRKP++ +L + D L E ++V +S EV+ +V EAL Sbjct: 1 MRLPIVGVMGSGAYSDRERCVALGRWLAGERVHLLTGGGGGVMSAVSRAFFETRNRAGLVLGILPASSAGGGE----APEGYPNPWVEIPIRTHLHLSGS--QGTDVASRNHINVLSCDVLIAMAGSWGTRSEVELALRYRKPIVAYLQQRSDIPRLP----ESVRVVESFEEVKAFVREAL 172
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|503958968|ref|WP_014192962.1| (DNA-binding protein [Burkholderia sp. YI23] >gi|357938763|gb|AET92320.1| Rossmann fold nucleotide-binding protein-like protein [Burkholderia sp. YI23]) HSP 1 Score: 148.288 bits (373), Expect = 2.183e-40 Identity = 84/179 (46.93%), Postives = 109/179 (60.89%), Query Frame = 0 Query: 17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALER 195 I VMGSG+ P LS PLG W+A +G NLLTGGG+GVM VSR F+ GR G+ IG++P P +P GYPNPY +I I T P P +RNH+N+LS D +VALPG GT EI++A+R+RKPLILF D + GVED +A ++ EV+ ++ E L R Sbjct: 6 IAVMGSGKLPWPELSVPLGKWIAESGHNLLTGGGQGVMSEVSRAFTSVEGRAGRSIGIVPTRPDPLA--GFVPLDGYPNPYIDIAIVTPLP-RREPGQDEGAINRNHVNVLSGDAIVALPGGPGTAQEIEIAMRWRKPLILFGPRDVHEY-----GVEDAPLATTLAEVQSFLREVLTR 176
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|654297775|ref|WP_027812105.1| (DNA-binding protein [Burkholderia cenocepacia]) HSP 1 Score: 148.673 bits (374), Expect = 2.497e-40 Identity = 83/184 (45.11%), Postives = 113/184 (61.41%), Query Frame = 0 Query: 17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRA 200 IGVMGSG+EP + S PLG+WLA G NLLTGGG+GVM V+R F+ PGR G+ IG++P A +P GYP+P+ +I + T P P + +RN++N+LSSD++VALPG GT EI LA R+RKPL+ F G DG LA D V S+ +V +V++A + +A Sbjct: 24 IGVMGSGKEPWLAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRAGRSIGILPT--QADPVAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGPGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFVDDAFAAEQAQA 199
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|1147401426|ref|WP_077209721.1| (DNA-binding protein [Burkholderia cenocepacia] >gi|1144118865|gb|ONR76798.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144180303|gb|ONS36864.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144185227|gb|ONS41672.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144187547|gb|ONS43947.1| DNA-binding protein [Burkholderia cenocepacia]) HSP 1 Score: 148.288 bits (373), Expect = 3.483e-40 Identity = 83/181 (45.86%), Postives = 109/181 (60.22%), Query Frame = 0 Query: 17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRR 197 IGVMGSG+EP S PLG+WLA G NLLTGGG+GVM V+R F+ PGR G+ IG++P A +P GYP+P+ +I + T P P + +RN++N+LSSD++VALPG GT EI LA R+RKPL+ F G DG LA D V S+ +V +V +A R Sbjct: 24 IGVMGSGKEPWAAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRTGRSIGIVPT--QADPAAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGHGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFVGDAFAAER 196
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|654293418|ref|WP_027808147.1| (DNA-binding protein [Burkholderia cenocepacia]) HSP 1 Score: 147.902 bits (372), Expect = 4.180e-40 Identity = 82/184 (44.57%), Postives = 113/184 (61.41%), Query Frame = 0 Query: 17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRA 200 IGVMGSG+EP + S PLG+WLA G NLLTGGG+GVM V+R F+ PGR G+ IG++P A +P GYP+P+ +I + T P P + +RN++N+LSSD++VALPG GT EI LA R+RKPL+ F G DG LA D V S+ +V ++++A + +A Sbjct: 24 IGVMGSGKEPWLAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRAGRSIGILPT--QADPVAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGPGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFIDDAFAAEQAQA 199
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|974655594|ref|WP_059241214.1| (hypothetical protein [Burkholderia cepacia] >gi|973225064|gb|ALX16592.1| DNA-binding protein [Burkholderia cepacia JBK9]) HSP 1 Score: 147.902 bits (372), Expect = 4.317e-40 Identity = 83/184 (45.11%), Postives = 111/184 (60.33%), Query Frame = 0 Query: 17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRA 200 IGVMGSG+EP + + PLG+WLA G NLLTGGG+GVM V+R F+ PGR G+ IG++P A +P GYP+P+ +I I T P P +RN++N+LSSD++VALPG GT EI LA R+RKPL+ F G DG LA D S+ +V +V++AL R+ Sbjct: 24 IGVMGSGKEPWLAFAEPLGAWLAQAGFNLLTGGGQGVMLAVARAFANVPGRAGRSIGIVPT--QADPLAGFVPLDGYPHPFVDIPILTPLP-RREPGADPHTINRNYVNVLSSDLIVALPGGHGTAQEISLAQRWRKPLVCF-GPDGAFESLA----PDAACTSSLDDVIRFVDDALAMAHARS 199
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|1147227408|ref|WP_077190554.1| (DNA-binding protein [Burkholderia cenocepacia] >gi|1144476148|gb|ONV27142.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144480825|gb|ONV31758.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144485457|gb|ONV36340.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144497165|gb|ONV47932.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144502851|gb|ONV53554.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144511529|gb|ONV62138.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144513554|gb|ONV64130.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144519421|gb|ONV69932.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144522163|gb|ONV72642.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144540385|gb|ONV90584.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144541380|gb|ONV91562.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144547946|gb|ONV98036.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144551377|gb|ONW01420.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1144568528|gb|ONW18300.1| DNA-binding protein [Burkholderia cenocepacia] >gi|1147493047|gb|AQQ40816.1| DNA-binding protein [Burkholderia cenocepacia]) HSP 1 Score: 147.902 bits (372), Expect = 4.654e-40 Identity = 84/184 (45.65%), Postives = 111/184 (60.33%), Query Frame = 0 Query: 17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRA 200 IGVMGSG+EP S PLG+WLA G NLLTGGG+GVM V+R F+ PGR G+ IG++P A +P GYP+P+ +I + T P P + +RN++N+LSSD++VALPG GT EI LA R+RKPL+ F G DG LA D V S+ +V +V +A R +A Sbjct: 24 IGVMGSGKEPWAAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRTGRSIGIVPT--QADPVAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGHGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFVGDAFAAEREQA 199
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|654271203|ref|WP_027786357.1| (DNA-binding protein [Burkholderia cepacia]) HSP 1 Score: 147.902 bits (372), Expect = 4.654e-40 Identity = 83/184 (45.11%), Postives = 112/184 (60.87%), Query Frame = 0 Query: 17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRA 200 IGVMGSG+EP + S PLG+WLA G NLLTGGG+GVM V+R F+ PGR G+ IG++P A +P GYP+P+ +I + T P P + +RN++N+LSSD++VALPG GT EI LA R+RKPL+ F G DG LA D V S+ +V +V +A + +A Sbjct: 24 IGVMGSGKEPWLAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRAGRSIGILPT--QADPVAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGHGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFVADAFSAEQAQA 199
BLAST of EWM24727.1 vs. NCBI_GenBank
Match: gi|685655872|gb|AIO43001.1| (putative lysine decarboxylase family protein [Burkholderia cepacia] >gi|686825240|gb|KGC04719.1| putative lysine decarboxylase family protein [Burkholderia cepacia]) HSP 1 Score: 147.132 bits (370), Expect = 5.602e-40 Identity = 83/181 (45.86%), Postives = 109/181 (60.22%), Query Frame = 0 Query: 17 IGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRR 197 IGVMGSG+EP S PLG+WLA G NLLTGGG+GVM V+R F+ PGR G+ IG++P A +P GYP+P+ +I + T P P + +RN++N+LSSD++VALPG GT EI LA R+RKPL+ F G DG LA D V S+ +V +V +A R Sbjct: 8 IGVMGSGKEPWAAFSEPLGAWLAQAGFNLLTGGGQGVMLAVARAFAGVPGRAGRSIGIVPT--QADPVAGFVPLDGYPHPFVDIPVLTPLP-RREPGAAPDTINRNYVNVLSSDLIVALPGGHGTAEEIALAQRWRKPLVCF-GPDGAFRSLAADAV----CTSSLDDVIRFVGDAFAAER 180 The following BLAST results are available for this feature:
BLAST of EWM24727.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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