EWM24725.1, cds5948 (CDS) Nannochloropsis gaditana

Overview
NameEWM24725.1
Unique Namecds5948
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:218111..218230 +
Alignment locationCM002467.1:218525..219409 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24725.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100180g3.4038.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:218111..218230 +
CM002467.1supercontigCM002467.1:218525..219409 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24725.1 vs. NCBI_GenBank
Match: gi|585106260|gb|EWM24725.1| (hypothetical protein Naga_100180g3 [Nannochloropsis gaditana])

HSP 1 Score: 691.419 bits (1783), Expect = 0.000e+0
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
Query:    1 MMTRKEKHRIYLCRDSLRWRGQAVTATLLCFFNMFPPTTKAIFTHPCPSAIAFGLCRGQGHQQHQHVPPRRDHQSIACSSSTLAVASPQRFQAWKHFSRLPSLRATDSTSPSSPPPPPSSSNRDAEALRRQRILAMQNEIVEEILLASDEEREKADAAKRALRQSTRRAIYEAYSQVGGEVNISEIGIPKKMTRMPKRAFADEEARKKEAISRGKPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAGPGAGVGQARFAMVILLVLIAGKYRDFVQVIPALVGFSTYQVASFLQAFDTQDVTDKNG 334
            MMTRKEKHRIYLCRDSLRWRGQAVTATLLCFFNMFPPTTKAIFTHPCPSAIAFGLCRGQGHQQHQHVPPRRDHQSIACSSSTLAVASPQRFQAWKHFSRLPSLRATDSTSPSSPPPPPSSSNRDAEALRRQRILAMQNEIVEEILLASDEEREKADAAKRALRQSTRRAIYEAYSQVGGEVNISEIGIPKKMTRMPKRAFADEEARKKEAISRGKPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAGPGAGVGQARFAMVILLVLIAGKYRDFVQVIPALVGFSTYQVASFLQAFDTQDVTDKNG
Sbjct:    1 MMTRKEKHRIYLCRDSLRWRGQAVTATLLCFFNMFPPTTKAIFTHPCPSAIAFGLCRGQGHQQHQHVPPRRDHQSIACSSSTLAVASPQRFQAWKHFSRLPSLRATDSTSPSSPPPPPSSSNRDAEALRRQRILAMQNEIVEEILLASDEEREKADAAKRALRQSTRRAIYEAYSQVGGEVNISEIGIPKKMTRMPKRAFADEEARKKEAISRGKPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAGPGAGVGQARFAMVILLVLIAGKYRDFVQVIPALVGFSTYQVASFLQAFDTQDVTDKNG 334          
BLAST of EWM24725.1 vs. NCBI_GenBank
Match: gi|299471351|emb|CBN79306.1| (ATP synthase protein I, putative [Ectocarpus siliculosus])

HSP 1 Score: 84.3445 bits (207), Expect = 9.080e-15
Identity = 56/150 (37.33%), Postives = 78/150 (52.00%), Query Frame = 0
Query:  187 GIPKKMTRMPKRAFADEEARKKEAISRGKP-YAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAGPGAGVGQ---------ARFAMVILLVLIAGKYRDFVQVIPALVGFSTYQVASFLQAFDT 326
            G   K      ++++  E    EAI+R K  Y  RK++L+ D+ +L  +G A  W  FSL+ + SYGLGA LG  Y+ LL R VE +G      G G          AR A+  LLVLI  K ++    IPA+ GF  YQ+A+ +Q   T
Sbjct:  165 GKKSKTNNASTQSYSTPEPMLPEAIARQKRLYEKRKWRLIGDNFFLGLLGTAGAWG-FSLKAACSYGLGATLGTAYLVLLSRFVENLGNENADGGGGGRGGGGGGGPARLALAGLLVLIVSKNKETFDFIPAVSGFLAYQIATLVQGIYT 313          
BLAST of EWM24725.1 vs. NCBI_GenBank
Match: gi|397574197|gb|EJK49082.1| (hypothetical protein THAOC_32076 [Thalassiosira oceanica])

HSP 1 Score: 72.4034 bits (176), Expect = 3.130e-11
Identity = 50/134 (37.31%), Postives = 75/134 (55.97%), Query Frame = 0
Query:  202 DEEARKKEAISRGKPYAVRKFQLLFDSIWLSAIGLALCW-AAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTA-----GPGAGVGQARFAMVILLVLIAGKYRDF-VQVIPALVGFSTYQVASFLQAFDTQD 328
            DE  R++      + +A R+  L  D+ + S +  +  W  A +   ++SY  GA+LG  Y   LG+ VE++G +       GAGVGQARFA +ILLV+  GK+R   +  IP+++GF TYQ+AS  Q     D
Sbjct:   89 DESLRRENR----EKFAKRRQALTSDTFYFSVLIASALWIVAPNPFVTISYLFGALLGTAYSFGLGKYVESIGASVDDEEAAGAGVGQARFAFLILLVVFVGKFRSAGLLEIPSIMGFFTYQLASLGQGLRQID 218          
BLAST of EWM24725.1 vs. NCBI_GenBank
Match: gi|629080895|gb|KCW47340.1| (hypothetical protein EUGRSUZ_K01127 [Eucalyptus grandis])

HSP 1 Score: 72.7886 bits (177), Expect = 5.802e-11
Identity = 45/134 (33.58%), Postives = 77/134 (57.46%), Query Frame = 0
Query:  205 ARKKEAISRGKPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAGPGA---GVGQARFAMVILLVLIAGKYR-----DF----VQVIPALVGFSTYQVASFLQAFDT 326
            A+ KE  S+ K    RK Q+L  SI    IGL   + +++L+T+ S+G+G +    Y+ +LG++V++M     G     +GQ R  + + LV+I  ++      DF    +++IP LVGF TY++A+F+QA + 
Sbjct:  167 AQSKEEYSKLK----RKLQILTLSI--GGIGLVSAYVSYTLKTAASFGVGLLGSLIYVRMLGKSVDSMADGAKGLINRSIGQPRLLVPVALVMIFNRWNEILVPDFGYMHLELIPMLVGFFTYKIATFIQAIEV 294          
BLAST of EWM24725.1 vs. NCBI_GenBank
Match: gi|223993787|ref|XP_002286577.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977892|gb|EED96218.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 70.0922 bits (170), Expect = 8.842e-11
Identity = 47/124 (37.90%), Postives = 69/124 (55.65%), Query Frame = 0
Query:  215 KPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQ--TSVSYGLGAVLGFGYITLLGRTVEAMGTA-------GPGAGVGQARFAMVILLVLIAGKYRD-FVQVIPALVGFSTYQVASFLQAFDTQD 328
            + +A R+  L  D+++ S +   L W  FS     ++SY  GA  G  Y   LG+ VE +G +       G GAG+G ARFA +ILL ++ GK+RD  +  IP+++GF TYQ+AS  Q     D
Sbjct:   49 EKFAKRRLALTSDTLYFSLLISCLLWL-FSSNPFVTISYLFGATSGTAYAYGLGKYVETIGGSIDDIEEEGAGAGIGSARFAFLILLFVVVGKFRDQGLLEIPSIMGFFTYQLASLGQGLREID 171          
BLAST of EWM24725.1 vs. NCBI_GenBank
Match: gi|497453751|ref|WP_009767949.1| (ATP synthase I chain [Oscillatoriales cyanobacterium JSC-12] >gi|410711330|gb|EKQ68837.1| ATP synthase I chain [Oscillatoriales cyanobacterium JSC-12])

HSP 1 Score: 67.0106 bits (162), Expect = 4.025e-10
Identity = 37/121 (30.58%), Postives = 72/121 (59.50%), Query Frame = 0
Query:  198 RAFADEEARKKEAISRGKPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAGPGAGVGQARFAMVILLVLIAGKYRDFVQVIPALVGFSTYQVA 318
            R  ++ E    EA +  + Y   +++LL  ++ L+A+  A  W  +SL  +++Y LGA  G  Y+ +L R VE +GT    + VG+++ A+ + L+++A +++  +Q++P  +GF TY+ A
Sbjct:    2 RELSNPEPASPEAQNSMQDYYQLQWELLVTTLILTAVFFAFVWYFYSLTIALNYLLGACTGVVYLKVLARNVERLGT--ENSKVGKSQIAIFVGLIIVATQWKQ-LQILPIFLGFLTYKAA 119          
BLAST of EWM24725.1 vs. NCBI_GenBank
Match: gi|1109484063|ref|WP_071891666.1| (hypothetical protein [Cyanobacterium sp. IPPAS B-1200])

HSP 1 Score: 67.781 bits (164), Expect = 4.180e-10
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 0
Query:  193 TRMPKRAFADEEARKKEAISRGKPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAGPGAGVGQARFAMVILLVLIAGKYRDFVQVIPALVGFSTYQVASFLQAFDTQDVTDKN 333
            T + +R    EE +K + ++    Y   K+ +L  ++ +     AL W  +SL T ++Y LG  +G  YI LL R VE +G       +G  R A+   L++IA + R  ++VIP  +GF TY+ +  L    +  ++ KN
Sbjct:   20 TLISQRETPPEEEKKDDYMAE---YYRLKYNILIATLIIGLSCFALVWVFYSLSTGLNYLLGTCVGLVYINLLAREVEKVGNG--KRSIGSTRLALFAGLMIIATQ-RQQLEVIPIFLGFMTYKASILLTVLPSSLLSGKN 154          
BLAST of EWM24725.1 vs. NCBI_GenBank
Match: gi|505031534|ref|WP_015218636.1| (ATP synthase subunit I [Cyanobacterium aponinum] >gi|428683438|gb|AFZ52905.1| ATP synthase I [Cyanobacterium aponinum PCC 10605])

HSP 1 Score: 66.6254 bits (161), Expect = 6.332e-10
Identity = 40/126 (31.75%), Postives = 70/126 (55.56%), Query Frame = 0
Query:  203 EEARKKEAI--SRGKPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAGPGAGVGQARFAMVILLVLIAGKYRDFVQVIPALVGFSTYQVASFLQAFDT 326
            E+ ++++ I  S  + Y +R   LL  ++ ++ +   L W  +SLQTS+SY LGA +   Y+ +L R VE +G       +G  R A+ + L+++A +++   QV+P  +GF TY+ A  L    T
Sbjct:    9 EQEKEQQLIDNSMEEYYQLRN-NLLIGTVVIAVVSFILVWVFYSLQTSLSYLLGACVSLVYLNMLAREVERVGVYKK--KIGSTRLAIFVGLMVVATQWQQL-QVLPVFLGFLTYKAAILLYVIPT 130          
BLAST of EWM24725.1 vs. NCBI_GenBank
Match: gi|504978416|ref|WP_015165518.1| (hypothetical protein [Pseudanabaena sp. PCC 7367] >gi|427990305|gb|AFY70560.1| ATP synthase I [Pseudanabaena sp. PCC 7367])

HSP 1 Score: 66.2402 bits (160), Expect = 1.157e-9
Identity = 39/135 (28.89%), Postives = 75/135 (55.56%), Query Frame = 0
Query:  197 KRAFADEEARKKEAI--SRGKPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAGPGAGVGQARFAMVILLVLIAGKYRDFVQVIPALVGFSTYQVASFLQAFDTQDV 329
            K+ +A   A   ++   S    YA  KF+LL  +I +S +     W A+ +  +++YGLGA +G  Y+ +L R+V+ +G       VG  R  + ++L+L+  ++ +++Q++P  +GF TY+ A  +  +  QD+
Sbjct:    8 KKEYASVVAESSQSFVDSSMDDYAQLKFKLLVLTIAISGLVCVGVWLAYGMNIALNYGLGACVGLVYLRMLARSVDGLGL--QQRSVGANRLGVFVILMLVTTRW-EYLQILPVFMGFVTYKAA--ILVYTVQDI 137          
BLAST of EWM24725.1 vs. NCBI_GenBank
Match: gi|694326701|ref|XP_009354256.1| (PREDICTED: uncharacterized protein LOC103945415 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 68.9366 bits (167), Expect = 1.726e-9
Identity = 37/123 (30.08%), Postives = 68/123 (55.28%), Query Frame = 0
Query:  215 KPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAGPG---AGVGQARFAMVILLVLIAGKYRDFV---------QVIPALVGFSTYQVASFLQAFD 325
            K Y   K +L F ++ +  +GL   + ++S + + SYG+G +    Y+ +LG +V++M     G     +GQ R  + ++LV+I  ++   V         ++IP LVGF TY++A+F+QA +
Sbjct:  205 KQYFRLKKRLQFLTLGIGGVGLVSAYVSYSPEITASYGVGLLGSIAYMRMLGSSVDSMADGARGLLKGAIGQPRLLVPVVLVMIFNRWNGIVVPQYGFMHLELIPMLVGFFTYKIATFIQAIE 327          
The following BLAST results are available for this feature:
BLAST of EWM24725.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106260|gb|EWM24725.1|0.000e+0100.00hypothetical protein Naga_100180g3 [Nannochloropsi... [more]
gi|299471351|emb|CBN79306.1|9.080e-1537.33ATP synthase protein I, putative [Ectocarpus silic... [more]
gi|397574197|gb|EJK49082.1|3.130e-1137.31hypothetical protein THAOC_32076 [Thalassiosira oc... [more]
gi|629080895|gb|KCW47340.1|5.802e-1133.58hypothetical protein EUGRSUZ_K01127 [Eucalyptus gr... [more]
gi|223993787|ref|XP_002286577.1|8.842e-1137.90predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|497453751|ref|WP_009767949.1|4.025e-1030.58ATP synthase I chain [Oscillatoriales cyanobacteri... [more]
gi|1109484063|ref|WP_071891666.1|4.180e-1030.50hypothetical protein [Cyanobacterium sp. IPPAS B-1... [more]
gi|505031534|ref|WP_015218636.1|6.332e-1031.75ATP synthase subunit I [Cyanobacterium aponinum] >... [more]
gi|504978416|ref|WP_015165518.1|1.157e-928.89hypothetical protein [Pseudanabaena sp. PCC 7367] ... [more]
gi|694326701|ref|XP_009354256.1|1.726e-930.08PREDICTED: uncharacterized protein LOC103945415 is... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5963rna5963Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications