EWM24756.1, cds5917 (CDS) Nannochloropsis gaditana

Overview
NameEWM24756.1
Unique Namecds5917
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:134344..135105 +

Link to JBrowse

Properties
Property NameValue
Start range134344
Start range.
Protein idEWM24756.1
Productammecr1 protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100922g1.7984.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:134344..135105 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002733AMMECR1_domain
IPR023473AMMECR1
IPR027485AMMECR1_N
Homology
BLAST of EWM24756.1 vs. NCBI_GenBank
Match: gi|585106313|gb|EWM24756.1| (ammecr1 protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 511.531 bits (1316), Expect = 0.000e+0
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
Query:    1 PSSSSSSSSSSSSSSSSSLSLPPSPSLSSHPQATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGRGEGGGEGGRKKRVVVS 253
            PSSSSSSSSSSSSSSSSSLSLPPSPSLSSHPQATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGRGEGGGEGGRKKRVVVS
Sbjct:    1 PSSSSSSSSSSSSSSSSSLSLPPSPSLSSHPQATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGRGEGGGEGGRKKRVVVS 253          
BLAST of EWM24756.1 vs. NCBI_GenBank
Match: gi|553189912|ref|XP_005855098.1| (hypothetical protein NGA_2120800, partial [Nannochloropsis gaditana CCMP526] >gi|422293962|gb|EKU21262.1| hypothetical protein NGA_2120800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 427.172 bits (1097), Expect = 2.201e-150
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0
Query:   32 QATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGR 237
            QAT AHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGR
Sbjct:   16 QATSAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGR 221          
BLAST of EWM24756.1 vs. NCBI_GenBank
Match: gi|298710032|emb|CBJ31750.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 187.193 bits (474), Expect = 1.719e-55
Identity = 105/216 (48.61%), Postives = 133/216 (61.57%), Query Frame = 0
Query:   22 PPSPSLSSHPQATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGR 237
            PP+ +L    QAT     YCF+V++ HFN     PP P F T   C +FVTW+K      HG ++   LRGCIGTL P+ +  LR+Y +SSA +DRRF+PI   EL SL  SVSLLV YE        DWE+GVHGIVI F D  G     YSAT+LPEVAAEQ W+R+  L  LVRK+GY   +D    F   V +TRY+SSK  + Y+E+++ R
Sbjct:   44 PPAETL----QATREMCAYCFDVIIAHFNNI--EPPPPSFSTRYVCGMFVTWDKH----EHGTES---LRGCIGTLHPQAISQLRDYTYSSALNDRRFAPIEMPELASLDVSVSLLVKYEPAQHWE--DWEIGVHGIVIKFDDDRGSS---YSATFLPEVAAEQGWSRKVTLSRLVRKAGYKRVVDRA--FLAGVEVTRYQSSKHKLPYQEYLEMR 239          
BLAST of EWM24756.1 vs. NCBI_GenBank
Match: gi|695428337|ref|XP_009529927.1| (hypothetical protein PHYSODRAFT_286451 [Phytophthora sojae] >gi|348676360|gb|EGZ16178.1| hypothetical protein PHYSODRAFT_286451 [Phytophthora sojae])

HSP 1 Score: 183.341 bits (464), Expect = 1.356e-54
Identity = 98/207 (47.34%), Postives = 126/207 (60.87%), Query Frame = 0
Query:   33 ATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGRGE 239
            A+ A V YCF+ L  HF+G  GA P P FD     PLFVTWE + +G       G  LRGCIGTL+P  L +LR++ F SA  DRRF PI   EL  L CSVSLL+ Y+D    +  DWE+G HGI+I F D  G     YSATYLP+VA EQ WT  E + SL+RK+GY  ++       + V +TRYRSS   +TY++++  + E
Sbjct:    2 ASAAMVVYCFDTLQSHFDG--GAEPTPRFDVLQEYPLFVTWEIEEQG-------GTHLRGCIGTLAPTRLRNLRDFTFKSALRDRRFDPIGPQELHRLHCSVSLLIDYQDAESFD--DWEIGTHGIIIDFSDSRG---NEYSATYLPQVAREQGWTHTETVTSLMRKAGYRRSV--TQDMLKTVKVTRYRSSIHKLTYQQYLSLKQE 192          
BLAST of EWM24756.1 vs. NCBI_GenBank
Match: gi|953495284|emb|CEG43191.1| (Uncharacterized conserved protein, AMMECR1 [Plasmopara halstedii])

HSP 1 Score: 182.956 bits (463), Expect = 2.437e-54
Identity = 97/207 (46.86%), Postives = 123/207 (59.42%), Query Frame = 0
Query:   33 ATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGRGE 239
            A+ A V YCF+ L  HFNG     P P FD     PLFVTWE + +G         QLRGCIGTL+P  L +LR++ F SA HDRRF PI   EL  L CSVSLL+ Y D    +  DW +G HGI+I F D  G     YSATYLP+VA EQ WT  E + SL+RK+GY  T+       + V +TRYR+S   +TY++++  + E
Sbjct:    2 ASAAMVVYCFDTLQSHFNG--STEPKPFFDVQQEYPLFVTWEVEEQG-------RIQLRGCIGTLAPTRLQNLRDFTFKSALHDRRFDPIGPQELNRLLCSVSLLIDYNDAKSYD--DWVIGTHGIIIKFNDSDGNT---YSATYLPQVAREQGWTHVETITSLMRKAGYRCTV--SEDMLKTVKVTRYRTSIHKLTYQQYLSVKQE 192          
BLAST of EWM24756.1 vs. NCBI_GenBank
Match: gi|1013939679|gb|KYQ93368.1| (DUF51 family protein [Dictyostelium lacteum])

HSP 1 Score: 180.259 bits (456), Expect = 2.786e-53
Identity = 98/203 (48.28%), Postives = 130/203 (64.04%), Query Frame = 0
Query:   32 QATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGD-LREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREF 233
            + TP  V YCF+ L++H  GK   PP  +  T    PLFVTW+K+  G         +LRGCIGT     L + L ++  +SA  D RFSPI+  ELPSL C+VSLLV +ED    +VWDWE+G HGI I F D   +G  R ++TYLPEVA EQ WT+++AL SL++K+GY G +D    F  KV LTRY+SSK ++TY+E+
Sbjct:    7 RVTPEMVAYCFDSLVYHLEGKALKPPTFINST---FPLFVTWKKEKGG------NEPELRGCIGTFKSIPLIEGLNKFSLTSALKDDRFSPISAKELPSLHCAVSLLVDFEDAK--DVWDWEIGTHGIWIEFSD---QGYTR-NSTYLPEVAEEQGWTQEKALYSLIKKAGYYGKVD--DNFLAKVKLTRYQSSKLTLTYKEY 192          
BLAST of EWM24756.1 vs. NCBI_GenBank
Match: gi|593689556|ref|XP_007145397.1| (hypothetical protein PHAVU_007G235600g [Phaseolus vulgaris] >gi|561018587|gb|ESW17391.1| hypothetical protein PHAVU_007G235600g [Phaseolus vulgaris])

HSP 1 Score: 178.333 bits (451), Expect = 1.913e-52
Identity = 101/213 (47.42%), Postives = 131/213 (61.50%), Query Frame = 0
Query:   33 ATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGD-LREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGRGEGGGEG 244
            A    V +CF+ L+ H+N +   PP P FD     PLFVTW+K    V +GG    +LRGCIGTL  ++L + L++Y  +SA  DRRF PI  +ELP L C+VSLL  YE     N  DWE+  HGI+I F D V     R SATYLPEVAA + WT+ EA++SL+RKSGY G I    +  + + LTRY+S+ F+M YRE+V    E  GE 
Sbjct:    4 ANQEMVVFCFDTLVAHYNNQ--EPPPPAFDQA-HHPLFVTWKK----VVNGGDP--RLRGCIGTLEARSLINGLKDYALTSALRDRRFPPIQANELPLLECTVSLLTDYE--AAKNYLDWEIEKHGIIIEFSDPVY--CTRRSATYLPEVAANEGWTKIEAIDSLIRKSGYNGPI--TDELRKDLQLTRYQSTLFTMNYREYVSYVKERRGEA 201          
BLAST of EWM24756.1 vs. NCBI_GenBank
Match: gi|951028472|ref|XP_014514433.1| (PREDICTED: uncharacterized protein At2g38710 [Vigna radiata var. radiata])

HSP 1 Score: 176.022 bits (445), Expect = 1.518e-51
Identity = 100/213 (46.95%), Postives = 131/213 (61.50%), Query Frame = 0
Query:   33 ATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTLGD-LREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGRGEGGGEG 244
            A    V YCF+ L+ H+N +   PP P FD     PLFVTW+K    V +GG    +LRGCIGTL  ++L + L++Y  +SA  DRRF PI  +ELP L C+VS+L  YE     N  DWE+  HGI+I F D V   + R SATYLPEVAA + WT+ EA++SL+RKSGY G I    +   ++ LTRY+S+ F+M Y E+V    E  GE 
Sbjct:    4 ANQEMVVYCFDTLVSHYNNQ--EPPPPAFDQA-QHPLFVTWKK----VVNGGDP--RLRGCIGTLEARSLINGLKDYALTSALRDRRFPPIQANELPFLECTVSILTDYETAN--NYLDWEIEKHGIIIEFSDPVY--STRRSATYLPEVAANEGWTKVEAIDSLIRKSGYNGPITDELRM--QLQLTRYQSTLFTMHYSEYVSYVKERRGEA 201          
BLAST of EWM24756.1 vs. NCBI_GenBank
Match: gi|831776359|ref|XP_012754779.1| (hypothetical protein SAMD00019534_058340 [Acytostelium subglobosum LB1] >gi|735855411|dbj|GAM22659.1| hypothetical protein SAMD00019534_058340 [Acytostelium subglobosum LB1])

HSP 1 Score: 176.022 bits (445), Expect = 1.637e-51
Identity = 94/215 (43.72%), Postives = 127/215 (59.07%), Query Frame = 0
Query:   24 SPSLSSHPQATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTL-GDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGR 237
            S S ++   A    V YCF+ L++H++      P    D     PLFVTW+ D +G          LRGCIGT   + L   L  Y  +SA  D RF PI   +LP L CSVSLLV +ED    + WDWEVGVHGI I F+D       + +ATYLPEV  EQ WT++EAL+SLVRK+GY G +D   +  +++ LTRY+SSK +MTY ++++ +
Sbjct:    2 STSQNTTDVANEHMVAYCFDTLINHYDATKLNTPTFTND---PYPLFVTWKIDARG-----NGDYDLRGCIGTFQAQPLIQTLNNYALTSALKDHRFKPIPQKDLPKLKCSVSLLVDFEDAK--DCWDWEVGVHGIWIEFRDA---SNTKLNATYLPEVMPEQEWTKEEALKSLVRKAGYNGKVDE--QLLQRIKLTRYQSSKSAMTYAQYLEHK 201          
BLAST of EWM24756.1 vs. NCBI_GenBank
Match: gi|1044558248|ref|XP_017415289.1| (PREDICTED: uncharacterized protein At2g38710 [Vigna angularis] >gi|920691210|gb|KOM34435.1| hypothetical protein LR48_Vigan02g058500 [Vigna angularis] >gi|965609678|dbj|BAT96169.1| hypothetical protein VIGAN_08306100 [Vigna angularis var. angularis])

HSP 1 Score: 174.866 bits (442), Expect = 4.163e-51
Identity = 100/213 (46.95%), Postives = 130/213 (61.03%), Query Frame = 0
Query:   33 ATPAHVHYCFEVLLHHFNGKGGAPPVPVFDTTVSCPLFVTWEKDGKGVRHGGKTGRQLRGCIGTLSPKTL-GDLREYVFSSAFHDRRFSPIAHHELPSLACSVSLLVAYEDVGRGNVWDWEVGVHGIVISFQDGVGRGARRYSATYLPEVAAEQAWTRQEALESLVRKSGYTGTIDAGGKFWEKVALTRYRSSKFSMTYREFVDGRGEGGGEG 244
            A    V YCF+ L+ H+N +   PP P FD     PLFVTW+K    V +GG    +LRGCIGTL  ++L   L++Y  +SA  DRRF PI  +ELP L C+VS+L  YE     N  DWE+  HGI+I F D V   + R SATYLPEVAA + WT+ EA++SL+RKSGY G I    +   ++ LTRY+S+ F+M Y E+V    E  GE 
Sbjct:    4 ANQEMVVYCFDTLVAHYNNQ--EPPPPAFDQA-QHPLFVTWKK----VVNGGDP--RLRGCIGTLEARSLISGLKDYALTSALRDRRFPPIQANELPFLECTVSILTDYETAN--NYLDWEIEKHGIIIEFSDPVY--STRRSATYLPEVAANEGWTKIEAIDSLIRKSGYNGPITDELRM--QLQLTRYQSTLFTMHYSEYVSYVKERRGEA 201          
The following BLAST results are available for this feature:
BLAST of EWM24756.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106313|gb|EWM24756.1|0.000e+0100.00ammecr1 protein, partial [Nannochloropsis gaditana... [more]
gi|553189912|ref|XP_005855098.1|2.201e-15099.51hypothetical protein NGA_2120800, partial [Nannoch... [more]
gi|298710032|emb|CBJ31750.1|1.719e-5548.61conserved unknown protein [Ectocarpus siliculosus][more]
gi|695428337|ref|XP_009529927.1|1.356e-5447.34hypothetical protein PHYSODRAFT_286451 [Phytophtho... [more]
gi|953495284|emb|CEG43191.1|2.437e-5446.86Uncharacterized conserved protein, AMMECR1 [Plasmo... [more]
gi|1013939679|gb|KYQ93368.1|2.786e-5348.28DUF51 family protein [Dictyostelium lacteum][more]
gi|593689556|ref|XP_007145397.1|1.913e-5247.42hypothetical protein PHAVU_007G235600g [Phaseolus ... [more]
gi|951028472|ref|XP_014514433.1|1.518e-5146.95PREDICTED: uncharacterized protein At2g38710 [Vign... [more]
gi|831776359|ref|XP_012754779.1|1.637e-5143.72hypothetical protein SAMD00019534_058340 [Acytoste... [more]
gi|1044558248|ref|XP_017415289.1|4.163e-5146.95PREDICTED: uncharacterized protein At2g38710 [Vign... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5932rna5932Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications