EWM24762.1, cds5912 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|585106322|gb|EWM24762.1| (31 kda ribonucleoprotein [Nannochloropsis gaditana]) HSP 1 Score: 431.795 bits (1109), Expect = 4.120e-153 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query: 1 MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGYEGRDHNASCSRTINKDIRKEWKLRKRWKDKCQHTTTKHHRDTTAEGGQEGGREEGRRGVGRKERMMEGEGESRVEMRMTMRISFSSGEK 212
MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGYEGRDHNASCSRTINKDIRKEWKLRKRWKDKCQHTTTKHHRDTTAEGGQEGGREEGRRGVGRKERMMEGEGESRVEMRMTMRISFSSGEK
Sbjct: 1 MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGYEGRDHNASCSRTINKDIRKEWKLRKRWKDKCQHTTTKHHRDTTAEGGQEGGREEGRRGVGRKERMMEGEGESRVEMRMTMRISFSSGEK 212
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|553181008|ref|XP_005853497.1| (glycine-rich rna-binding protein 4 [Nannochloropsis gaditana CCMP526] >gi|422295561|gb|EKU22860.1| glycine-rich rna-binding protein 4 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 250.751 bits (639), Expect = 6.239e-82 Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0
Query: 1 MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGYEG 125
MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGY G
Sbjct: 1 MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGYGG 125
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|1101178581|gb|OIP31031.1| (hypothetical protein AUK47_23370 [Deltaproteobacteria bacterium CG2_30_63_29]) HSP 1 Score: 95.5153 bits (236), Expect = 4.405e-22 Identity = 51/90 (56.67%), Postives = 61/90 (67.78%), Query Frame = 0
Query: 31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGR 120
KLFVG LS+ T+ LR AFE FG + + VI +RETG+SRGFGFV Y+ ADAAI++MD AELDGR LRVN A + G RG R
Sbjct: 4 KLFVGGLSWGTKDEGLRAAFEEFGPVTEAKVISDRETGRSRGFGFVTYDDPTHADAAIAKMDGAELDGRNLRVNEAHDKRPGDGGRGPAR 93
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|585108650|gb|EWM26565.1| (cold-inducible rna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 96.2857 bits (238), Expect = 1.492e-21 Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 0
Query: 31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRR 116
KL++GNLSF+T LREAF G + F+ VI +R+TG+SRGFGFV + K +A AI ++ ELDGR +RVNFA+PR+ RR
Sbjct: 47 KLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPRDPNAPRR 132
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|1045913131|gb|OCH90246.1| (RNA-binding domain-containing protein [Obba rivulosa]) HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-20 Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 0
Query: 31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPR 109
K++VGNLS+ T LR AF P+G ++ S V+ +R+TG+SRGFGFV Y EAD AIS ++ ELDGR ++VN A PR
Sbjct: 4 KVYVGNLSWNTTDDTLRSAFAPYGNVLDSIVMRDRDTGRSRGFGFVTYSSSMEADTAISSLNEQELDGRRIKVNLANPR 82
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|1018861078|dbj|GAT57679.1| (glycine-rich RNA binding protein [Mycena chlorophos]) HSP 1 Score: 92.4337 bits (228), Expect = 3.556e-20 Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 0
Query: 29 GYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPR 109
G K++VGNLS+ T LR AF FG+++ S V+ +RETG+SRGFGFV Y EADAAI++++ ELDGR ++VN A R
Sbjct: 2 GSKVYVGNLSWNTTDDTLRNAFSDFGQVLDSIVMRDRETGRSRGFGFVTYSSAQEADAAIAQLNEQELDGRRIKVNLANAR 82
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|628832093|ref|XP_007766350.1| (RNA-binding domain-containing protein [Coniophora puteana RWD-64-598 SS2] >gi|392593259|gb|EIW82584.1| RNA-binding domain-containing protein [Coniophora puteana RWD-64-598 SS2]) HSP 1 Score: 90.8929 bits (224), Expect = 3.836e-20 Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 0
Query: 31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPR 109
K++VGNLS+ T LR+AF FG +V S V+ +R+TG+SRGFGFV Y EA++AIS +++ +LDGR ++VN A PR
Sbjct: 5 KIYVGNLSWNTTDDTLRQAFSTFGNVVDSVVMRDRDTGRSRGFGFVTYSSTQEAESAISGLNDQDLDGRRIKVNIANPR 83
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|1000875651|gb|KXN93387.1| (Glycine-rich RNA-binding protein 2, mitochondrial [Leucoagaricus sp. SymC.cos]) HSP 1 Score: 91.2781 bits (225), Expect = 5.313e-20 Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 0
Query: 31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPR 109
K++VGNLS+ T+ AALR AF FG ++ S V+ +RETG+SRGFGFV Y+ EA +AI+ M+ +LDGR ++VN A R
Sbjct: 4 KIYVGNLSWGTDDAALRSAFSQFGDVIDSVVMRDRETGRSRGFGFVTYQSSEEAQSAIASMNEQDLDGRRIKVNLANAR 82
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|695558404|ref|XP_009547649.1| (hypothetical protein HETIRDRAFT_418898 [Heterobasidion irregulare TC 32-1] >gi|575065347|gb|ETW80962.1| hypothetical protein HETIRDRAFT_418898 [Heterobasidion irregulare TC 32-1]) HSP 1 Score: 89.7373 bits (221), Expect = 2.566e-19 Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 0
Query: 31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPR 109
K++VGNLS+ T LR+AF FG+I+ S V+ +RETG+SRGFGFV + EADAAI+ ++ ELDGR +RVN A +
Sbjct: 4 KVYVGNLSWNTTDDTLRQAFSEFGQILDSIVMRDRETGRSRGFGFVTFSTSEEADAAINNLNEQELDGRRIRVNLANAK 82
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|1072770671|ref|WP_069960540.1| (RNA-binding protein [Lacunisphaera limnophila] >gi|1070531858|gb|AOS43152.1| RNA recognition motif protein [Lacunisphaera limnophila]) HSP 1 Score: 88.9669 bits (219), Expect = 2.997e-19 Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0
Query: 29 GYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPRE 110
G KL+V NLS+ A LR AFEPFG I + +RETG+ RGFGF+ + EA AAI++M+ ELDGR L VN ARP+E
Sbjct: 2 GSKLYVANLSYNVTEAELRTAFEPFGGIADIFLATDRETGRPRGFGFITFNTDEEAQAAIAKMNGVELDGRALTVNEARPKE 83 The following BLAST results are available for this feature:
BLAST of EWM24762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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