EWM24762.1, cds5912 (CDS) Nannochloropsis gaditana

Overview
NameEWM24762.1
Unique Namecds5912
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:111905..111988 +
Alignment locationCM002467.1:112597..112882 +
Alignment locationCM002467.1:113276..113544 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24762.1
Product31 kda ribonucleoprotein
Orig transcript idgnl|cribi|Naga_100612g2.7316.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:111905..111988 +
CM002467.1supercontigCM002467.1:112597..112882 +
CM002467.1supercontigCM002467.1:113276..113544 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|585106322|gb|EWM24762.1| (31 kda ribonucleoprotein [Nannochloropsis gaditana])

HSP 1 Score: 431.795 bits (1109), Expect = 4.120e-153
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query:    1 MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGYEGRDHNASCSRTINKDIRKEWKLRKRWKDKCQHTTTKHHRDTTAEGGQEGGREEGRRGVGRKERMMEGEGESRVEMRMTMRISFSSGEK 212
            MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGYEGRDHNASCSRTINKDIRKEWKLRKRWKDKCQHTTTKHHRDTTAEGGQEGGREEGRRGVGRKERMMEGEGESRVEMRMTMRISFSSGEK
Sbjct:    1 MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGYEGRDHNASCSRTINKDIRKEWKLRKRWKDKCQHTTTKHHRDTTAEGGQEGGREEGRRGVGRKERMMEGEGESRVEMRMTMRISFSSGEK 212          
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|553181008|ref|XP_005853497.1| (glycine-rich rna-binding protein 4 [Nannochloropsis gaditana CCMP526] >gi|422295561|gb|EKU22860.1| glycine-rich rna-binding protein 4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 250.751 bits (639), Expect = 6.239e-82
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0
Query:    1 MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGYEG 125
            MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGY G
Sbjct:    1 MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGRGGYGG 125          
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|1101178581|gb|OIP31031.1| (hypothetical protein AUK47_23370 [Deltaproteobacteria bacterium CG2_30_63_29])

HSP 1 Score: 95.5153 bits (236), Expect = 4.405e-22
Identity = 51/90 (56.67%), Postives = 61/90 (67.78%), Query Frame = 0
Query:   31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRRGGGR 120
            KLFVG LS+ T+   LR AFE FG +  + VI +RETG+SRGFGFV Y+    ADAAI++MD AELDGR LRVN A  +    G RG  R
Sbjct:    4 KLFVGGLSWGTKDEGLRAAFEEFGPVTEAKVISDRETGRSRGFGFVTYDDPTHADAAIAKMDGAELDGRNLRVNEAHDKRPGDGGRGPAR 93          
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|585108650|gb|EWM26565.1| (cold-inducible rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 96.2857 bits (238), Expect = 1.492e-21
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRR 116
            KL++GNLSF+T    LREAF   G + F+ VI +R+TG+SRGFGFV +  K +A  AI  ++  ELDGR +RVNFA+PR+    RR
Sbjct:   47 KLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPRDPNAPRR 132          
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|1045913131|gb|OCH90246.1| (RNA-binding domain-containing protein [Obba rivulosa])

HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-20
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 0
Query:   31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPR 109
            K++VGNLS+ T    LR AF P+G ++ S V+ +R+TG+SRGFGFV Y    EAD AIS ++  ELDGR ++VN A PR
Sbjct:    4 KVYVGNLSWNTTDDTLRSAFAPYGNVLDSIVMRDRDTGRSRGFGFVTYSSSMEADTAISSLNEQELDGRRIKVNLANPR 82          
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|1018861078|dbj|GAT57679.1| (glycine-rich RNA binding protein [Mycena chlorophos])

HSP 1 Score: 92.4337 bits (228), Expect = 3.556e-20
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 0
Query:   29 GYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPR 109
            G K++VGNLS+ T    LR AF  FG+++ S V+ +RETG+SRGFGFV Y    EADAAI++++  ELDGR ++VN A  R
Sbjct:    2 GSKVYVGNLSWNTTDDTLRNAFSDFGQVLDSIVMRDRETGRSRGFGFVTYSSAQEADAAIAQLNEQELDGRRIKVNLANAR 82          
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|628832093|ref|XP_007766350.1| (RNA-binding domain-containing protein [Coniophora puteana RWD-64-598 SS2] >gi|392593259|gb|EIW82584.1| RNA-binding domain-containing protein [Coniophora puteana RWD-64-598 SS2])

HSP 1 Score: 90.8929 bits (224), Expect = 3.836e-20
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 0
Query:   31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPR 109
            K++VGNLS+ T    LR+AF  FG +V S V+ +R+TG+SRGFGFV Y    EA++AIS +++ +LDGR ++VN A PR
Sbjct:    5 KIYVGNLSWNTTDDTLRQAFSTFGNVVDSVVMRDRDTGRSRGFGFVTYSSTQEAESAISGLNDQDLDGRRIKVNIANPR 83          
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|1000875651|gb|KXN93387.1| (Glycine-rich RNA-binding protein 2, mitochondrial [Leucoagaricus sp. SymC.cos])

HSP 1 Score: 91.2781 bits (225), Expect = 5.313e-20
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 0
Query:   31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPR 109
            K++VGNLS+ T+ AALR AF  FG ++ S V+ +RETG+SRGFGFV Y+   EA +AI+ M+  +LDGR ++VN A  R
Sbjct:    4 KIYVGNLSWGTDDAALRSAFSQFGDVIDSVVMRDRETGRSRGFGFVTYQSSEEAQSAIASMNEQDLDGRRIKVNLANAR 82          
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|695558404|ref|XP_009547649.1| (hypothetical protein HETIRDRAFT_418898 [Heterobasidion irregulare TC 32-1] >gi|575065347|gb|ETW80962.1| hypothetical protein HETIRDRAFT_418898 [Heterobasidion irregulare TC 32-1])

HSP 1 Score: 89.7373 bits (221), Expect = 2.566e-19
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 0
Query:   31 KLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPR 109
            K++VGNLS+ T    LR+AF  FG+I+ S V+ +RETG+SRGFGFV +    EADAAI+ ++  ELDGR +RVN A  +
Sbjct:    4 KVYVGNLSWNTTDDTLRQAFSEFGQILDSIVMRDRETGRSRGFGFVTFSTSEEADAAINNLNEQELDGRRIRVNLANAK 82          
BLAST of EWM24762.1 vs. NCBI_GenBank
Match: gi|1072770671|ref|WP_069960540.1| (RNA-binding protein [Lacunisphaera limnophila] >gi|1070531858|gb|AOS43152.1| RNA recognition motif protein [Lacunisphaera limnophila])

HSP 1 Score: 88.9669 bits (219), Expect = 2.997e-19
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0
Query:   29 GYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPRE 110
            G KL+V NLS+    A LR AFEPFG I    +  +RETG+ RGFGF+ +    EA AAI++M+  ELDGR L VN ARP+E
Sbjct:    2 GSKLYVANLSYNVTEAELRTAFEPFGGIADIFLATDRETGRPRGFGFITFNTDEEAQAAIAKMNGVELDGRALTVNEARPKE 83          
The following BLAST results are available for this feature:
BLAST of EWM24762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106322|gb|EWM24762.1|4.120e-153100.0031 kda ribonucleoprotein [Nannochloropsis gaditana... [more]
gi|553181008|ref|XP_005853497.1|6.239e-8299.20glycine-rich rna-binding protein 4 [Nannochloropsi... [more]
gi|1101178581|gb|OIP31031.1|4.405e-2256.67hypothetical protein AUK47_23370 [Deltaproteobacte... [more]
gi|585108650|gb|EWM26565.1|1.492e-2152.33cold-inducible rna-binding protein [Nannochloropsi... [more]
gi|1045913131|gb|OCH90246.1|1.391e-2053.16RNA-binding domain-containing protein [Obba rivulo... [more]
gi|1018861078|dbj|GAT57679.1|3.556e-2053.09glycine-rich RNA binding protein [Mycena chloropho... [more]
gi|628832093|ref|XP_007766350.1|3.836e-2051.90RNA-binding domain-containing protein [Coniophora ... [more]
gi|1000875651|gb|KXN93387.1|5.313e-2053.16Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
gi|695558404|ref|XP_009547649.1|2.566e-1953.16hypothetical protein HETIRDRAFT_418898 [Heterobasi... [more]
gi|1072770671|ref|WP_069960540.1|2.997e-1953.66RNA-binding protein [Lacunisphaera limnophila] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5927rna5927Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications